Wall clock time and date at job start Tue Mar 31 2020 11:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46878 * 265.13947 * 3 2 1 5 5 C 1.36963 * 120.00215 * 263.90950 * 4 3 2 6 6 H 1.07997 * 120.00551 * 203.06716 * 5 4 3 7 7 C 1.38970 * 119.99558 * 23.07260 * 5 4 3 8 8 N 1.31422 * 120.00181 * 21.61900 * 7 5 4 9 9 Si 1.86805 * 119.99800 * 201.61297 * 7 5 4 10 10 H 1.48500 * 109.46553 * 90.00362 * 9 7 5 11 11 H 1.48502 * 109.47220 * 209.99678 * 9 7 5 12 12 H 1.48497 * 109.47043 * 330.00384 * 9 7 5 13 13 C 1.34778 * 120.00414 * 83.91661 * 4 3 2 14 14 O 1.21670 * 120.00535 * 174.41003 * 13 4 3 15 15 C 1.47060 * 119.99534 * 354.68056 * 13 4 3 16 16 N 1.33465 * 122.56418 * 357.29795 * 15 13 4 17 17 C 1.28849 * 115.89301 * 179.79396 * 16 15 13 18 18 S 1.75971 * 109.56658 * 0.44835 * 17 16 15 19 19 C 1.35304 * 122.56539 * 177.58671 * 15 13 4 20 20 Br 1.89099 * 125.48242 * 359.97438 * 19 15 13 21 21 H 4.40637 * 5.51395 * 179.97438 * 4 1 2 22 22 H 1.09000 * 109.46791 * 145.14151 * 3 2 1 23 23 H 1.08994 * 109.46911 * 25.13825 * 3 2 1 24 24 H 0.97004 * 119.99418 * 180.02562 * 8 7 5 25 25 H 1.08004 * 125.21618 * 180.19436 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.1179 1.3762 5 6 3.4807 1.3444 1.8779 6 1 4.1663 1.4138 2.7094 7 6 2.9497 2.4996 1.3169 8 7 1.8339 2.4413 0.6250 9 14 3.8220 4.1355 1.5464 10 1 4.7896 4.3400 0.4386 11 1 2.8231 5.2343 1.5401 12 1 4.5466 4.1325 2.8425 13 6 3.2428 -0.9811 2.1488 14 8 3.7428 -0.9003 3.2551 15 6 2.7622 -2.2792 1.6522 16 7 2.1632 -2.4182 0.4676 17 6 1.7972 -3.6144 0.1591 18 16 2.2167 -4.7148 1.4666 19 6 2.8884 -3.4232 2.3637 20 35 3.6801 -3.5700 4.0747 21 1 -1.0500 0.0002 0.0000 22 1 3.0090 0.8441 -0.5874 23 1 3.0098 -0.9295 -0.4365 24 1 1.4635 3.2477 0.2331 25 1 1.3044 -3.8975 -0.7593 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491644329.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:39 Heat of formation + Delta-G solvation = 87.191544 kcal Electronic energy + Delta-G solvation = -16078.985012 eV Core-core repulsion = 13233.436299 eV Total energy + Delta-G solvation = -2845.548713 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 313.947 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43319 -39.28763 -37.10109 -33.97192 -33.22532 -32.92032 -30.33830 -28.37826 -27.16959 -25.77900 -23.17906 -20.36878 -19.68206 -19.54867 -18.30273 -17.25132 -17.04458 -16.30699 -16.25137 -15.68827 -15.08877 -14.59301 -14.30323 -14.11906 -14.00553 -13.53638 -12.99313 -12.79276 -12.52270 -12.41191 -12.16442 -11.64309 -11.14232 -10.99969 -10.63701 -10.50339 -10.26620 -10.00393 -9.83893 -9.72048 -8.34343 -5.96247 -0.68902 -0.12244 0.43371 0.83056 1.08497 1.42774 1.45764 1.54781 2.13465 2.35413 2.45144 2.63350 3.03275 3.09484 3.51048 3.96330 4.08064 4.23651 4.68745 4.90548 5.07472 5.44023 5.54055 6.03391 6.33723 6.51391 7.08665 7.31839 7.37321 7.93901 8.61756 Molecular weight = 313.95amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.006337 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.177541 B = 4417.137322 C = 5572.971925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.106 4.106 3 C 0.241 3.759 4 N -0.425 5.425 5 C -0.352 4.352 6 H 0.081 0.919 7 C 0.006 3.994 8 N -0.858 5.858 9 Si 0.989 3.011 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.275 1.275 13 C 0.481 3.519 14 O -0.594 6.594 15 C 0.046 3.954 16 N -0.452 5.452 17 C 0.058 3.942 18 S 0.244 5.756 19 C -0.250 4.250 20 Br 0.040 6.960 21 H 0.223 0.777 22 H 0.073 0.927 23 H 0.108 0.892 24 H 0.275 0.725 25 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -14.981 -3.330 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.108 4.108 3 C 0.119 3.881 4 N -0.141 5.141 5 C -0.480 4.480 6 H 0.098 0.902 7 C -0.199 4.199 8 N -0.493 5.493 9 Si 0.812 3.188 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.199 1.199 13 C 0.269 3.731 14 O -0.479 6.479 15 C -0.091 4.091 16 N -0.167 5.167 17 C -0.242 4.242 18 S 0.498 5.502 19 C -0.454 4.454 20 Br 0.123 6.877 21 H 0.240 0.760 22 H 0.091 0.909 23 H 0.125 0.875 24 H 0.085 0.915 25 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -1.174 -15.467 -2.494 15.711 hybrid contribution 0.174 2.004 0.267 2.030 sum -1.000 -13.463 -2.227 13.682 Atomic orbital electron populations 1.24786 0.96023 1.07203 1.01122 1.22887 0.94243 0.94529 0.99103 1.18459 0.85451 1.01152 0.83051 1.43793 1.53586 1.05860 1.10822 1.19653 1.26692 0.82438 1.19168 0.90164 1.26140 0.94956 1.02438 0.96406 1.70214 1.15453 1.30827 1.32825 0.85016 0.78161 0.76646 0.78992 1.18774 1.20131 1.19936 1.17599 0.86189 0.83947 0.85367 1.90677 1.50222 1.85643 1.21405 1.20477 1.02057 0.95022 0.91561 1.67562 1.12375 1.22820 1.13911 1.30472 1.00672 0.89014 1.04020 1.83296 1.50189 1.08033 1.08704 1.27108 1.13957 1.01378 1.02941 1.96643 1.80057 1.97195 1.13820 0.75979 0.90942 0.87504 0.91534 0.72609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.50 19.25 74.32 1.43 -10.07 15 2 C -0.11 -4.90 9.45 31.13 0.29 -4.61 15 3 C 0.24 11.42 4.76 84.58 0.40 11.82 15 4 N -0.42 -22.98 2.58 -649.54 -1.68 -24.66 15 5 C -0.35 -20.22 9.23 84.07 0.78 -19.44 15 6 H 0.08 4.90 7.44 -2.91 -0.02 4.88 15 7 C 0.01 0.33 4.81 84.93 0.41 0.74 15 8 N -0.86 -45.61 9.71 21.67 0.21 -45.40 15 9 Si 0.99 42.18 29.60 68.60 2.03 44.21 15 10 H -0.26 -10.62 7.11 99.48 0.71 -9.91 15 11 H -0.28 -11.35 7.11 99.48 0.71 -10.64 15 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 13 C 0.48 25.42 7.53 86.56 0.65 26.07 15 14 O -0.59 -34.10 14.14 -4.25 -0.06 -34.16 15 15 C 0.05 1.95 6.40 40.53 0.26 2.21 15 16 N -0.45 -15.85 5.48 -189.01 -1.04 -16.88 15 17 C 0.06 1.33 12.47 130.68 1.63 2.96 15 18 S 0.24 5.44 23.19 -56.49 -1.31 4.13 15 19 C -0.25 -8.86 6.82 67.14 0.46 -8.40 15 20 Br 0.04 1.42 31.63 -20.37 -0.64 0.77 15 21 H 0.22 7.53 7.80 -4.42 -0.03 7.50 15 22 H 0.07 3.58 6.84 -2.39 -0.02 3.57 15 23 H 0.11 4.52 5.75 -2.39 -0.01 4.51 15 24 H 0.27 13.71 8.31 -92.71 -0.77 12.94 15 25 H 0.26 2.95 8.06 -2.91 -0.02 2.93 15 Total: -1.00 -71.23 262.58 5.06 -66.17 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.24 Total: 4.55 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 6.31 Total: 1.27 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.50 Total: -86.94 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.06 Total: -34.16 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.31 Total: 4.13 kcal Atomic # 35 Polarization: 1.42 SS G_CDS: -0.64 Total: 0.77 kcal Total: -71.23 5.06 -66.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491644329.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.357 kcal (2) G-P(sol) polarization free energy of solvation -71.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds