Wall clock time and date at job start Tue Mar 31 2020 11:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47109 * 2 1 4 4 H 1.08999 * 109.50965 * 304.91181 * 3 2 1 5 5 C 1.53097 * 109.50694 * 184.77600 * 3 2 1 6 6 N 1.47017 * 109.25786 * 183.21595 * 5 3 2 7 7 C 1.46902 * 111.00062 * 182.39830 * 6 5 3 8 8 C 1.53004 * 109.46687 * 302.41385 * 7 6 5 9 9 N 1.46499 * 109.46970 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00391 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99464 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00327 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46684 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46623 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47325 * 59.99531 * 20 18 16 22 22 H 1.48496 * 109.47425 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47183 * 299.99726 * 20 18 16 24 24 C 1.47008 * 110.75316 * 58.61798 * 6 5 3 25 25 C 1.53102 * 109.25902 * 301.38774 * 24 6 5 26 26 O 1.43009 * 109.25852 * 56.84541 * 25 24 6 27 27 H 1.09000 * 109.47540 * 300.00119 * 1 2 3 28 28 H 1.09000 * 109.46882 * 60.00276 * 1 2 3 29 29 H 1.09005 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47540 * 239.99881 * 2 1 3 31 31 H 1.09000 * 109.46882 * 119.99724 * 2 1 3 32 32 H 1.09003 * 109.50061 * 63.28385 * 5 3 2 33 33 H 1.08994 * 109.51231 * 303.15230 * 5 3 2 34 34 H 1.08997 * 109.47035 * 182.41510 * 7 6 5 35 35 H 1.09000 * 109.46975 * 62.40810 * 7 6 5 36 36 H 1.08988 * 109.47430 * 60.00001 * 8 7 6 37 37 H 1.09000 * 109.46944 * 299.99444 * 8 7 6 38 38 H 0.96999 * 119.99984 * 0.02562 * 9 8 7 39 39 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 41 41 H 1.09001 * 109.46577 * 299.99570 * 13 12 10 42 42 H 1.09000 * 109.47486 * 59.99935 * 14 13 12 43 43 H 1.09001 * 109.47362 * 299.99212 * 14 13 12 44 44 H 1.08993 * 109.46955 * 300.00075 * 15 14 13 45 45 H 1.09000 * 109.47050 * 59.99904 * 15 14 13 46 46 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 47 47 H 1.09010 * 109.50508 * 61.31913 * 24 6 5 48 48 H 1.08997 * 109.50930 * 181.40301 * 24 6 5 49 49 H 1.08996 * 109.50545 * 176.78304 * 25 24 6 50 50 H 1.08998 * 109.50045 * 296.86580 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9817 -0.8425 5 6 3.5663 1.4451 -0.1202 6 7 4.0564 2.8290 -0.0421 7 6 5.5148 2.8812 -0.2105 8 6 6.1828 2.0116 0.8566 9 7 7.6372 2.0642 0.6891 10 6 8.4371 1.3704 1.5229 11 8 7.9516 0.7013 2.4145 12 7 9.7752 1.4192 1.3691 13 6 10.6446 0.6645 2.2752 14 6 12.1067 0.8906 1.8851 15 6 13.0147 0.1030 2.8318 16 6 14.4547 0.3251 2.4471 17 1 14.6980 0.9638 1.6108 18 6 15.4617 -0.2878 3.1621 19 7 15.1656 -1.0660 4.1802 20 14 17.2468 -0.0119 2.6858 21 1 17.5671 1.4348 2.7831 22 1 18.1281 -0.7764 3.6045 23 1 17.4642 -0.4744 1.2915 24 6 3.6495 3.4551 1.2242 25 6 2.1223 3.4322 1.3310 26 8 1.6620 2.0827 1.2218 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8567 1.0095 -1.0762 33 1 3.9964 0.8603 0.6928 34 1 5.8560 3.9111 -0.1058 35 1 5.7798 2.5094 -1.2002 36 1 5.8416 0.9818 0.7519 37 1 5.9178 2.3834 1.8464 38 1 8.0246 2.5989 -0.0214 39 1 10.1626 1.9533 0.6581 40 1 10.4098 -0.3975 2.2035 41 1 10.4847 1.0038 3.2987 42 1 12.3418 1.9525 1.9564 43 1 12.2664 0.5510 0.8617 44 1 12.8549 0.4429 3.8549 45 1 12.7797 -0.9590 2.7608 46 1 15.8740 -1.4969 4.6834 47 1 4.0810 2.9023 2.0588 48 1 4.0014 4.4863 1.2500 49 1 1.8186 3.8436 2.2936 50 1 1.6924 4.0303 0.5276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494882944.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:43 Heat of formation + Delta-G solvation = -91.774285 kcal Electronic energy + Delta-G solvation = -25668.430251 eV Core-core repulsion = 21922.970783 eV Total energy + Delta-G solvation = -3745.459469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44131 -39.70722 -37.09658 -35.46396 -34.44993 -34.27804 -33.28045 -31.25805 -30.41587 -29.60179 -27.07111 -25.98304 -24.61849 -23.54559 -22.84729 -21.65297 -20.87409 -20.42395 -20.39210 -18.11152 -17.06347 -16.78022 -16.55943 -16.12817 -15.96775 -15.56842 -15.28052 -14.91393 -14.62221 -14.46321 -14.36823 -14.09616 -13.92558 -13.72957 -13.66450 -13.33116 -12.55094 -12.47332 -12.27792 -12.25097 -11.87096 -11.81765 -11.67878 -11.61389 -11.35685 -11.22697 -10.88623 -10.80313 -10.72730 -10.62571 -10.16281 -10.02340 -9.86282 -9.45365 -9.25563 -9.14330 -8.85506 -8.62941 -8.37098 -6.01795 -4.05135 2.70580 3.29415 3.31662 3.33477 3.36534 3.38278 3.40739 4.25936 4.35613 4.41929 4.45580 4.48254 4.60122 4.67300 4.68845 4.77078 4.90423 4.94727 5.08675 5.12362 5.15388 5.30068 5.33740 5.34025 5.45945 5.50228 5.53786 5.59026 5.63618 5.71865 5.78847 5.80483 5.93917 6.16915 6.27148 6.41840 6.47695 6.51152 6.61468 6.77954 6.80863 7.01215 7.03497 7.63256 7.76267 7.96822 8.11407 8.37608 8.71789 9.01283 9.58919 11.09418 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.034179 B = 0.001668 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.010035 B =16781.767111 C =17089.865382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.095 3.905 4 H 0.066 0.934 5 C 0.013 3.987 6 N -0.526 5.526 7 C 0.044 3.956 8 C 0.103 3.897 9 N -0.749 5.749 10 C 0.699 3.301 11 O -0.593 6.593 12 N -0.741 5.741 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.008 3.992 25 C 0.066 3.934 26 O -0.379 6.379 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.395 0.605 39 H 0.394 0.606 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.262 0.738 47 H 0.051 0.949 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.820 9.624 -12.170 32.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.037 3.963 4 H 0.084 0.916 5 C -0.115 4.115 6 N -0.250 5.250 7 C -0.085 4.085 8 C -0.024 4.024 9 N -0.406 5.406 10 C 0.399 3.601 11 O -0.471 6.471 12 N -0.395 5.395 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.120 4.120 25 C -0.011 4.011 26 O -0.298 6.298 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.229 0.771 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -29.521 9.045 -11.416 32.918 hybrid contribution 2.083 0.326 -0.376 2.141 sum -27.438 9.371 -11.792 31.300 Atomic orbital electron populations 1.21694 0.94952 1.01644 1.02256 1.21546 0.96986 0.94031 1.03036 1.22209 0.92455 0.94259 0.87410 0.91569 1.22951 0.96272 0.89528 1.02731 1.62536 1.10823 1.17549 1.34063 1.22437 0.86541 1.00651 0.98870 1.21861 0.79440 1.01059 1.00016 1.44967 1.06123 1.53582 1.35977 1.16031 0.81647 0.80359 0.82099 1.90925 1.74716 1.46048 1.35415 1.45385 1.04194 1.53244 1.36691 1.21522 0.89527 0.95344 0.92461 1.21892 0.91544 1.01218 1.01161 1.19029 0.93076 0.95185 0.94107 1.21167 0.91254 1.28945 1.14828 0.92704 1.25031 0.99219 0.95167 0.95041 1.69958 1.32850 1.30929 1.19490 0.86632 0.84649 0.78228 0.78310 1.20267 1.21264 1.20263 1.22919 0.97302 1.00725 0.91060 1.22625 0.92235 0.83873 1.02408 1.88006 1.76507 1.26250 1.39037 0.91929 0.92917 0.92653 0.90412 0.90952 0.89418 0.92812 0.89683 0.89615 0.91573 0.91772 0.77124 0.77296 0.91966 0.91961 0.92762 0.92755 0.96230 0.96235 0.92869 0.93034 0.89358 0.88332 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.81 37.16 0.36 -0.55 16 2 C -0.12 -0.78 5.65 -26.73 -0.15 -0.93 16 3 C 0.09 0.71 2.81 -26.68 -0.07 0.63 16 4 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 5 C 0.01 0.10 4.41 -3.71 -0.02 0.08 16 6 N -0.53 -3.87 4.94 -234.30 -1.16 -5.03 16 7 C 0.04 0.29 5.50 -3.82 -0.02 0.27 16 8 C 0.10 1.00 4.96 -4.04 -0.02 0.98 16 9 N -0.75 -7.95 5.56 -65.23 -0.36 -8.31 16 10 C 0.70 10.82 8.57 -86.92 -0.74 10.08 16 11 O -0.59 -11.96 16.34 5.29 0.09 -11.88 16 12 N -0.74 -10.80 5.56 -65.22 -0.36 -11.16 16 13 C 0.13 2.43 5.67 -4.04 -0.02 2.41 16 14 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.01 0.06 5.33 -3.71 -0.02 0.04 16 25 C 0.07 0.45 7.01 37.21 0.26 0.71 16 26 O -0.38 -3.40 10.01 -35.23 -0.35 -3.76 16 27 H 0.06 0.45 7.82 -51.93 -0.41 0.04 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.49 6.40 -51.93 -0.33 0.16 16 34 H 0.08 0.50 8.11 -51.93 -0.42 0.07 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.75 6.42 -51.94 -0.33 0.41 16 37 H 0.06 0.73 6.61 -51.93 -0.34 0.39 16 38 H 0.40 2.89 8.49 -40.82 -0.35 2.54 16 39 H 0.39 4.48 8.49 -40.82 -0.35 4.13 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.05 0.45 6.59 -51.92 -0.34 0.10 16 48 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 49 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -34.19 396.29 -10.77 -44.96 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.18 Total: 0.60 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.14 Total: -1.74 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -1.15 Total: -50.62 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.27 Total: -15.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.19 -10.77 -44.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494882944.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.816 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds