Wall clock time and date at job start Tue Mar 31 2020 11:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47109 * 2 1 4 4 H 1.08999 * 109.50965 * 304.91181 * 3 2 1 5 5 C 1.53097 * 109.50694 * 184.77600 * 3 2 1 6 6 N 1.47017 * 109.25786 * 183.21595 * 5 3 2 7 7 C 1.46902 * 111.00062 * 182.39830 * 6 5 3 8 8 C 1.53004 * 109.46687 * 302.41385 * 7 6 5 9 9 N 1.46499 * 109.46970 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00391 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99464 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00327 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46684 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46623 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47325 * 59.99531 * 20 18 16 22 22 H 1.48496 * 109.47425 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47183 * 299.99726 * 20 18 16 24 24 C 1.47008 * 110.75316 * 58.61798 * 6 5 3 25 25 C 1.53102 * 109.25902 * 301.38774 * 24 6 5 26 26 O 1.43009 * 109.25852 * 56.84541 * 25 24 6 27 27 H 1.09000 * 109.47540 * 300.00119 * 1 2 3 28 28 H 1.09000 * 109.46882 * 60.00276 * 1 2 3 29 29 H 1.09005 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47540 * 239.99881 * 2 1 3 31 31 H 1.09000 * 109.46882 * 119.99724 * 2 1 3 32 32 H 1.09003 * 109.50061 * 63.28385 * 5 3 2 33 33 H 1.08994 * 109.51231 * 303.15230 * 5 3 2 34 34 H 1.08997 * 109.47035 * 182.41510 * 7 6 5 35 35 H 1.09000 * 109.46975 * 62.40810 * 7 6 5 36 36 H 1.08988 * 109.47430 * 60.00001 * 8 7 6 37 37 H 1.09000 * 109.46944 * 299.99444 * 8 7 6 38 38 H 0.96999 * 119.99984 * 0.02562 * 9 8 7 39 39 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 41 41 H 1.09001 * 109.46577 * 299.99570 * 13 12 10 42 42 H 1.09000 * 109.47486 * 59.99935 * 14 13 12 43 43 H 1.09001 * 109.47362 * 299.99212 * 14 13 12 44 44 H 1.08993 * 109.46955 * 300.00075 * 15 14 13 45 45 H 1.09000 * 109.47050 * 59.99904 * 15 14 13 46 46 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 47 47 H 1.09010 * 109.50508 * 61.31913 * 24 6 5 48 48 H 1.08997 * 109.50930 * 181.40301 * 24 6 5 49 49 H 1.08996 * 109.50545 * 176.78304 * 25 24 6 50 50 H 1.08998 * 109.50045 * 296.86580 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9817 -0.8425 5 6 3.5663 1.4451 -0.1202 6 7 4.0564 2.8290 -0.0421 7 6 5.5148 2.8812 -0.2105 8 6 6.1828 2.0116 0.8566 9 7 7.6372 2.0642 0.6891 10 6 8.4371 1.3704 1.5229 11 8 7.9516 0.7013 2.4145 12 7 9.7752 1.4192 1.3691 13 6 10.6446 0.6645 2.2752 14 6 12.1067 0.8906 1.8851 15 6 13.0147 0.1030 2.8318 16 6 14.4547 0.3251 2.4471 17 1 14.6980 0.9638 1.6108 18 6 15.4617 -0.2878 3.1621 19 7 15.1656 -1.0660 4.1802 20 14 17.2468 -0.0119 2.6858 21 1 17.5671 1.4348 2.7831 22 1 18.1281 -0.7764 3.6045 23 1 17.4642 -0.4744 1.2915 24 6 3.6495 3.4551 1.2242 25 6 2.1223 3.4322 1.3310 26 8 1.6620 2.0827 1.2218 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8567 1.0095 -1.0762 33 1 3.9964 0.8603 0.6928 34 1 5.8560 3.9111 -0.1058 35 1 5.7798 2.5094 -1.2002 36 1 5.8416 0.9818 0.7519 37 1 5.9178 2.3834 1.8464 38 1 8.0246 2.5989 -0.0214 39 1 10.1626 1.9533 0.6581 40 1 10.4098 -0.3975 2.2035 41 1 10.4847 1.0038 3.2987 42 1 12.3418 1.9525 1.9564 43 1 12.2664 0.5510 0.8617 44 1 12.8549 0.4429 3.8549 45 1 12.7797 -0.9590 2.7608 46 1 15.8740 -1.4969 4.6834 47 1 4.0810 2.9023 2.0588 48 1 4.0014 4.4863 1.2500 49 1 1.8186 3.8436 2.2936 50 1 1.6924 4.0303 0.5276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494882944.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:43 Heat of formation + Delta-G solvation = -117.958269 kcal Electronic energy + Delta-G solvation = -25669.565674 eV Core-core repulsion = 21922.970783 eV Total energy + Delta-G solvation = -3746.594891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27019 -40.70627 -37.86097 -36.94629 -35.40561 -35.16451 -34.92207 -32.99705 -31.00641 -30.42947 -28.56395 -27.05212 -25.19751 -24.90570 -23.93436 -22.34582 -22.23765 -21.87196 -21.05288 -19.30138 -18.53583 -17.68515 -17.56024 -17.13879 -16.98521 -16.52320 -16.38233 -16.00889 -15.85978 -15.73314 -15.39668 -14.91988 -14.78824 -14.66189 -14.50855 -14.23795 -13.96367 -13.73953 -13.53756 -13.21068 -13.02153 -12.78115 -12.71815 -12.55219 -12.40470 -12.34548 -12.22722 -11.90465 -11.79589 -11.71040 -11.66808 -11.39784 -11.31168 -11.17203 -10.61898 -10.54447 -10.45567 -9.81862 -9.49665 -8.18928 -6.30787 1.42060 1.45270 1.53038 1.62314 2.08083 2.42377 2.68959 2.84442 3.14676 3.33480 3.69718 3.79154 3.91430 3.98908 4.07731 4.10598 4.15479 4.19449 4.22084 4.34162 4.41040 4.44165 4.55000 4.56415 4.61655 4.75017 4.79311 4.85098 4.86704 4.94865 4.96561 4.99214 5.03048 5.10398 5.16611 5.24621 5.35915 5.43062 5.44934 5.53157 5.70777 5.82140 5.84235 5.84782 5.96581 6.22513 6.25055 6.86328 7.07901 7.38818 7.52949 8.92943 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.034179 B = 0.001668 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.010035 B =16781.767111 C =17089.865382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.094 3.906 4 H 0.073 0.927 5 C 0.014 3.986 6 N -0.524 5.524 7 C 0.054 3.946 8 C 0.107 3.893 9 N -0.725 5.725 10 C 0.695 3.305 11 O -0.645 6.645 12 N -0.728 5.728 13 C 0.149 3.851 14 C -0.099 4.099 15 C 0.022 3.978 16 C -0.542 4.542 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.008 3.992 25 C 0.063 3.937 26 O -0.401 6.401 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.416 0.584 39 H 0.414 0.586 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.069 0.931 44 H -0.008 1.008 45 H -0.008 1.008 46 H 0.263 0.737 47 H 0.031 0.969 48 H 0.105 0.895 49 H 0.109 0.891 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.561 11.538 -14.859 34.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.036 3.964 4 H 0.091 0.909 5 C -0.114 4.114 6 N -0.247 5.247 7 C -0.074 4.074 8 C -0.020 4.020 9 N -0.383 5.383 10 C 0.395 3.605 11 O -0.527 6.527 12 N -0.383 5.383 13 C 0.024 3.976 14 C -0.137 4.137 15 C -0.016 4.016 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.120 4.120 25 C -0.014 4.014 26 O -0.321 6.321 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.050 0.950 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.253 0.747 39 H 0.250 0.750 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.010 0.990 45 H 0.010 0.990 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.123 0.877 49 H 0.127 0.873 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -29.274 11.020 -14.180 34.343 hybrid contribution 1.929 -0.270 0.479 2.006 sum -27.345 10.749 -13.701 32.419 Atomic orbital electron populations 1.21664 0.94593 1.02019 1.01964 1.21577 0.97302 0.93688 1.03056 1.22283 0.92359 0.94598 0.87113 0.90934 1.22950 0.96345 0.89517 1.02550 1.62608 1.11000 1.17194 1.33876 1.22464 0.85801 1.00910 0.98274 1.21907 0.78768 1.00826 1.00472 1.44740 1.06103 1.52283 1.35197 1.16228 0.81900 0.80320 0.82101 1.90898 1.75606 1.48345 1.37802 1.44999 1.03732 1.53011 1.36599 1.21080 0.89329 0.94803 0.92359 1.21585 0.90965 1.01001 1.00187 1.18953 0.94040 0.94382 0.94175 1.21658 0.92373 1.28902 1.15100 0.91400 1.26042 1.04448 0.94780 0.94889 1.70113 1.34424 1.32135 1.20849 0.85447 0.78362 0.78600 0.78297 1.19004 1.21237 1.18990 1.22949 0.97481 1.01267 0.90284 1.22761 0.92055 0.83196 1.03401 1.87984 1.76884 1.27328 1.39882 0.93307 0.92052 0.91969 0.88854 0.92450 0.88097 0.94963 0.87904 0.87924 0.93289 0.93608 0.74653 0.74962 0.93659 0.93674 0.91223 0.91205 0.98989 0.98991 0.92844 0.95099 0.87678 0.87329 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.81 71.98 0.71 -1.01 16 2 C -0.12 -1.52 5.65 30.59 0.17 -1.35 16 3 C 0.09 1.35 2.81 30.63 0.09 1.43 16 4 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 5 C 0.01 0.21 4.41 86.31 0.38 0.59 16 6 N -0.52 -6.84 4.94 -895.20 -4.42 -11.26 16 7 C 0.05 0.60 5.50 86.30 0.47 1.07 16 8 C 0.11 2.00 4.96 86.38 0.43 2.43 16 9 N -0.73 -14.14 5.56 -478.55 -2.66 -16.80 16 10 C 0.70 21.06 8.57 179.06 1.53 22.59 16 11 O -0.64 -26.60 16.34 -3.99 -0.07 -26.66 16 12 N -0.73 -20.22 5.56 -478.52 -2.66 -22.88 16 13 C 0.15 5.39 5.67 86.38 0.49 5.88 16 14 C -0.10 -3.82 5.27 30.60 0.16 -3.65 16 15 C 0.02 1.16 4.97 29.85 0.15 1.31 16 16 C -0.54 -30.24 9.11 25.60 0.23 -30.00 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 20 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 C 0.01 0.11 5.33 86.32 0.46 0.57 16 25 C 0.06 0.81 7.01 72.02 0.50 1.32 16 26 O -0.40 -7.17 10.01 -148.98 -1.49 -8.66 16 27 H 0.05 0.71 7.82 -2.39 -0.02 0.69 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.62 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.03 0.61 6.40 -2.39 -0.02 0.59 16 34 H 0.10 0.84 8.11 -2.39 -0.02 0.82 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.05 1.12 6.42 -2.39 -0.02 1.10 16 37 H 0.05 1.05 6.61 -2.39 -0.02 1.04 16 38 H 0.42 4.75 8.49 -92.71 -0.79 3.96 16 39 H 0.41 8.22 8.49 -92.71 -0.79 7.44 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.03 0.55 6.59 -2.38 -0.02 0.53 16 48 H 0.11 1.03 8.12 -2.39 -0.02 1.01 16 49 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -75.96 396.29 -3.40 -79.36 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -0.66 Total: 16.82 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.24 Total: 1.42 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -9.45 Total: -107.98 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.56 Total: -35.32 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -75.96 -3.40 -79.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494882944.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.600 kcal (2) G-P(sol) polarization free energy of solvation -75.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds