Wall clock time and date at job start Tue Mar 31 2020 10:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00079 * 2 1 4 4 H 1.48500 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47377 * 300.00017 * 3 2 1 6 6 H 1.48501 * 109.47028 * 60.00300 * 3 2 1 7 7 C 1.37872 * 119.99484 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00602 * 0.02562 * 7 2 1 10 10 C 1.53121 * 109.52542 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27417 * 177.62068 * 10 9 7 12 12 N 1.46845 * 109.52874 * 300.81820 * 11 10 9 13 13 C 1.46894 * 111.00108 * 185.84353 * 12 11 10 14 14 C 1.50703 * 109.47094 * 170.00218 * 13 12 11 15 15 C 1.38237 * 120.00061 * 89.99638 * 14 13 12 16 16 C 1.38234 * 119.99843 * 179.97438 * 15 14 13 17 17 C 1.38237 * 120.00047 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00191 * 179.97438 * 17 16 15 19 19 C 1.54891 * 110.75653 * 126.67034 * 18 17 16 20 20 C 1.54267 * 104.19324 * 156.25978 * 19 18 17 21 21 C 1.53876 * 106.59870 * 336.39035 * 20 19 18 22 22 C 1.54261 * 106.59990 * 0.02562 * 21 20 19 23 23 C 1.38233 * 119.99939 * 0.25884 * 17 16 15 24 24 C 1.38234 * 119.99957 * 359.48710 * 23 17 16 25 25 C 1.46849 * 111.19482 * 61.74500 * 12 11 10 26 26 C 1.53040 * 109.52400 * 298.25768 * 25 12 11 27 27 H 0.97001 * 119.99887 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.51953 * 59.86745 * 9 7 2 29 29 H 1.09000 * 109.50326 * 57.67785 * 10 9 7 30 30 H 1.09002 * 109.53173 * 297.57713 * 10 9 7 31 31 H 1.09006 * 109.45709 * 180.80319 * 11 10 9 32 32 H 1.09004 * 109.45568 * 60.83431 * 11 10 9 33 33 H 1.08996 * 109.47301 * 49.99940 * 13 12 11 34 34 H 1.08997 * 109.47023 * 289.99617 * 13 12 11 35 35 H 1.07991 * 119.99929 * 0.02562 * 15 14 13 36 36 H 1.07997 * 119.99879 * 180.02562 * 16 15 14 37 37 H 1.09005 * 110.81410 * 3.34038 * 18 17 16 38 38 H 1.09004 * 110.48613 * 37.58350 * 19 18 17 39 39 H 1.08994 * 110.48745 * 274.93768 * 19 18 17 40 40 H 1.08995 * 110.03032 * 217.10762 * 20 19 18 41 41 H 1.08998 * 110.03405 * 95.67701 * 20 19 18 42 42 H 1.08998 * 110.02768 * 119.28860 * 21 20 19 43 43 H 1.08999 * 110.02894 * 240.66545 * 21 20 19 44 44 H 1.09000 * 110.48928 * 142.28640 * 22 21 20 45 45 H 1.09001 * 110.48691 * 264.79667 * 22 21 20 46 46 H 1.08007 * 120.00061 * 179.72629 * 23 17 16 47 47 H 1.08005 * 119.99891 * 180.25083 * 24 23 17 48 48 H 1.08996 * 109.46366 * 58.27320 * 25 12 11 49 49 H 1.08996 * 109.46382 * 178.24598 * 25 12 11 50 50 H 1.08994 * 109.50509 * 299.24390 * 26 25 12 51 51 H 1.08991 * 109.50414 * 179.11841 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2449 -3.6640 0.0005 11 6 1.4749 -4.9851 0.0605 12 7 0.6531 -5.0195 1.2770 13 6 0.0068 -6.3287 1.4388 14 6 -0.6223 -6.4128 2.8057 15 6 -1.9294 -6.0029 2.9914 16 6 -2.5065 -6.0806 4.2451 17 6 -1.7764 -6.5676 5.3132 18 6 -2.4054 -6.6518 6.6800 19 6 -2.2694 -8.0816 7.2598 20 6 -2.3671 -7.8817 8.7864 21 6 -1.9530 -6.4264 9.0665 22 6 -1.6187 -5.7926 7.7004 23 6 -0.4675 -6.9720 5.1286 24 6 0.1080 -6.8992 3.8739 25 6 -0.3406 -3.9383 1.2772 26 6 0.3751 -2.5858 1.2536 27 1 -0.4850 0.8401 -0.0004 28 1 0.6226 -2.5569 -0.8882 29 1 2.8990 -3.5842 0.8688 30 1 2.8432 -3.6325 -0.9100 31 1 2.1802 -5.8161 0.0750 32 1 0.8313 -5.0703 -0.8151 33 1 0.7516 -7.1173 1.3325 34 1 -0.7628 -6.4506 0.6766 35 1 -2.4998 -5.6229 2.1569 36 1 -3.5278 -5.7608 4.3901 37 1 -3.4515 -6.3474 6.6445 38 1 -1.3040 -8.5115 6.9924 39 1 -3.0818 -8.7159 6.9054 40 1 -1.6906 -8.5672 9.2967 41 1 -3.3911 -8.0494 9.1201 42 1 -2.7761 -5.8879 9.5362 43 1 -1.0761 -6.4057 9.7136 44 1 -1.9560 -4.7566 7.6677 45 1 -0.5480 -5.8505 7.5047 46 1 0.1043 -7.3483 5.9640 47 1 1.1294 -7.2189 3.7289 48 1 -0.9756 -4.0286 0.3959 49 1 -0.9540 -4.0089 2.1754 50 1 0.9998 -2.4892 2.1415 51 1 -0.3628 -1.7839 1.2379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569883916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:06 Heat of formation + Delta-G solvation = -16.539768 kcal Electronic energy + Delta-G solvation = -25954.443683 eV Core-core repulsion = 22623.095891 eV Total energy + Delta-G solvation = -3331.347792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90271 -39.73203 -38.30629 -35.85213 -33.87060 -32.24971 -31.88474 -31.36239 -29.51999 -29.34168 -27.55755 -25.62083 -23.97585 -23.51027 -23.27013 -21.96911 -21.03992 -20.63497 -20.30995 -18.44965 -17.55195 -16.93227 -16.74338 -16.33098 -16.20485 -16.01481 -15.43430 -15.16020 -14.79706 -14.74279 -14.34964 -14.29984 -14.21834 -14.12826 -13.80116 -13.63913 -13.07408 -12.96181 -12.87709 -12.76494 -12.54326 -12.26173 -12.09562 -12.07130 -11.95389 -11.93503 -11.90067 -11.84924 -11.57842 -11.34006 -11.33815 -11.22361 -10.80989 -10.64501 -10.38635 -9.72028 -9.41681 -9.11223 -8.08227 -6.21519 0.45031 0.58009 1.39061 1.40830 1.52383 2.43339 2.75025 3.18384 3.29661 3.65436 3.78729 3.87218 3.94520 4.01963 4.18967 4.23956 4.28304 4.31567 4.32578 4.46364 4.52205 4.59536 4.61252 4.63622 4.71548 4.72242 4.73450 4.79365 4.86050 4.88688 4.91171 4.98131 5.00815 5.09396 5.14449 5.15476 5.23041 5.24560 5.28127 5.33198 5.35411 5.42750 5.53290 5.56721 5.59068 5.62591 5.78942 5.80973 5.99508 6.02933 6.17548 6.28895 6.34693 6.40654 6.90313 7.46143 8.96569 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.016900 B = 0.002799 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.363552 B =10000.872230 C =10965.380817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.044 3.956 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.536 5.536 13 C 0.094 3.906 14 C -0.088 4.088 15 C -0.122 4.122 16 C -0.129 4.129 17 C -0.078 4.078 18 C -0.052 4.052 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.105 4.105 25 C 0.071 3.929 26 C -0.092 4.092 27 H 0.259 0.741 28 H -0.013 1.013 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.022 0.978 33 H 0.097 0.903 34 H 0.037 0.963 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.135 0.865 47 H 0.130 0.870 48 H 0.012 0.988 49 H 0.068 0.932 50 H 0.026 0.974 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 -18.645 14.647 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.137 4.137 11 C -0.062 4.062 12 N -0.260 5.260 13 C -0.033 4.033 14 C -0.088 4.088 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.078 4.078 18 C -0.071 4.071 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.138 4.138 24 C -0.123 4.123 25 C -0.057 4.057 26 C -0.131 4.131 27 H 0.069 0.931 28 H 0.006 0.994 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.040 0.960 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.132 0.868 36 H 0.148 0.852 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.153 0.847 47 H 0.148 0.852 48 H 0.030 0.970 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.112 -18.458 15.031 24.347 hybrid contribution -0.321 1.339 -1.102 1.763 sum -5.433 -17.119 13.929 22.729 Atomic orbital electron populations 1.70035 1.07158 1.26929 1.51684 1.25764 0.95707 1.02412 0.94925 0.85575 0.79127 0.79810 0.77567 1.19156 1.20587 1.20675 1.21616 0.92990 0.92241 1.50074 0.93076 1.18670 0.93185 0.92782 0.92859 1.21543 0.97940 0.94006 1.00235 1.22079 0.96010 0.98472 0.89611 1.61965 1.23334 1.02568 1.38173 1.21082 0.97605 0.91529 0.93116 1.19799 0.94003 0.99357 0.95687 1.21155 0.95273 0.99867 0.97810 1.21194 1.00507 1.00562 0.92391 1.19946 0.94319 0.98240 0.95273 1.21126 0.99181 0.96796 0.89969 1.22462 1.02251 0.95166 0.95275 1.22138 1.01929 0.96460 0.95473 1.22138 1.01522 0.95936 0.96498 1.22465 0.99993 0.98741 0.94478 1.21119 0.94957 1.00616 0.97094 1.21155 0.99775 0.99058 0.92338 1.22035 0.93113 0.91750 0.98765 1.21391 0.99057 0.94653 0.97987 0.93146 0.99440 0.93106 0.92627 0.88997 0.95984 0.88462 0.94461 0.86765 0.85182 0.89750 0.91319 0.91306 0.91104 0.91236 0.91476 0.91368 0.92243 0.91842 0.84712 0.85161 0.97027 0.91322 0.95552 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 11.37 21.45 0.24 -54.20 16 2 C 0.01 0.57 5.31 84.65 0.45 1.02 16 3 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.53 -30.29 8.56 25.60 0.22 -30.07 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.27 2.16 -11.46 -0.02 2.25 16 10 C -0.10 -4.23 5.32 30.65 0.16 -4.07 16 11 C 0.07 2.30 5.46 86.33 0.47 2.77 16 12 N -0.54 -18.96 4.65 -900.94 -4.19 -23.15 16 13 C 0.09 2.63 5.12 85.56 0.44 3.07 16 14 C -0.09 -2.42 4.89 -19.86 -0.10 -2.51 16 15 C -0.12 -3.32 7.88 22.27 0.18 -3.15 16 16 C -0.13 -3.10 9.69 22.27 0.22 -2.89 16 17 C -0.08 -1.70 4.97 -19.87 -0.10 -1.80 16 18 C -0.05 -0.91 3.11 -10.26 -0.03 -0.94 16 19 C -0.11 -1.63 6.21 31.67 0.20 -1.43 16 20 C -0.12 -1.47 6.80 31.32 0.21 -1.26 16 21 C -0.12 -1.65 6.80 31.32 0.21 -1.44 16 22 C -0.12 -2.04 6.23 31.66 0.20 -1.85 16 23 C -0.12 -2.66 8.31 22.27 0.19 -2.48 16 24 C -0.10 -2.60 9.70 22.27 0.22 -2.38 16 25 C 0.07 2.91 5.16 86.33 0.45 3.36 16 26 C -0.09 -4.64 5.13 30.65 0.16 -4.48 16 27 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.09 2.63 8.02 -2.38 -0.02 2.61 16 32 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.10 2.31 7.93 -2.39 -0.02 2.29 16 34 H 0.04 1.04 8.07 -2.39 -0.02 1.02 16 35 H 0.11 3.08 7.95 -2.92 -0.02 3.06 16 36 H 0.13 2.68 7.98 -2.91 -0.02 2.66 16 37 H 0.08 1.40 7.96 -2.38 -0.02 1.38 16 38 H 0.07 1.00 6.73 -2.38 -0.02 0.98 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 1.17 7.15 -2.39 -0.02 1.15 16 46 H 0.14 2.45 7.01 -2.91 -0.02 2.43 16 47 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 48 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.07 2.69 5.75 -2.39 -0.01 2.68 16 50 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.06 3.32 6.18 -2.39 -0.01 3.30 16 Total: -1.00 -62.89 386.22 2.65 -60.24 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.87 Total: 18.60 kcal Atomic # 6 Polarization: -51.99 SS G_CDS: 3.70 Total: -48.29 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -3.94 Total: -77.35 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -62.89 2.65 -60.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569883916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.702 kcal (2) G-P(sol) polarization free energy of solvation -62.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds