Wall clock time and date at job start Tue Mar 31 2020 11:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47358 * 2 1 4 4 N 1.46901 * 109.47268 * 120.00631 * 2 1 3 5 5 C 1.46850 * 110.99929 * 180.02562 * 4 2 1 6 6 C 1.53042 * 109.52355 * 185.83564 * 5 4 2 7 7 C 1.53117 * 109.27721 * 300.81926 * 6 5 4 8 8 N 1.46893 * 109.52147 * 177.55846 * 7 6 5 9 9 C 1.46901 * 111.00024 * 154.99843 * 8 7 6 10 10 C 1.52999 * 109.47409 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47406 * 59.99712 * 10 9 8 12 12 O 1.42905 * 109.46872 * 299.99796 * 10 9 8 13 13 C 1.52998 * 109.47318 * 179.97438 * 10 9 8 14 14 N 1.46906 * 109.47197 * 182.15693 * 13 10 9 15 15 C 1.46901 * 110.99925 * 199.76710 * 14 13 10 16 16 C 1.46892 * 110.99774 * 75.81142 * 14 13 10 17 17 C 1.50701 * 109.46993 * 189.99771 * 16 14 13 18 18 H 1.07994 * 120.00328 * 0.02562 * 17 16 14 19 19 C 1.37887 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99584 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47108 * 120.00613 * 21 19 17 24 24 H 1.48507 * 109.47091 * 240.00414 * 21 19 17 25 25 C 1.53117 * 109.16141 * 57.65084 * 7 6 5 26 26 C 1.46853 * 110.99634 * 304.20097 * 4 2 1 27 27 H 1.09000 * 109.46980 * 59.99670 * 1 2 3 28 28 H 1.09001 * 109.46937 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46390 * 299.99403 * 1 2 3 30 30 H 1.09000 * 109.46891 * 240.00158 * 2 1 3 31 31 H 1.08996 * 109.46880 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47014 * 300.00520 * 3 2 1 33 33 H 1.09000 * 109.46991 * 60.00218 * 3 2 1 34 34 H 1.08999 * 109.46808 * 65.81821 * 5 4 2 35 35 H 1.08997 * 109.45938 * 305.84451 * 5 4 2 36 36 H 1.08994 * 109.50558 * 180.87562 * 6 5 4 37 37 H 1.09002 * 109.50346 * 60.75652 * 6 5 4 38 38 H 1.09001 * 109.52312 * 297.68678 * 7 6 5 39 39 H 1.00901 * 111.00017 * 278.94843 * 8 7 6 40 40 H 1.08995 * 109.47180 * 59.99940 * 9 8 7 41 41 H 1.09002 * 109.47373 * 300.00035 * 9 8 7 42 42 H 0.96701 * 114.00201 * 299.99769 * 12 10 9 43 43 H 1.09000 * 109.47245 * 62.15773 * 13 10 9 44 44 H 1.09002 * 109.47237 * 302.15962 * 13 10 9 45 45 H 1.08999 * 109.47031 * 291.01429 * 15 14 13 46 46 H 1.09002 * 109.47006 * 51.00954 * 15 14 13 47 47 H 1.08993 * 109.46940 * 171.01218 * 15 14 13 48 48 H 1.08994 * 109.47530 * 310.00139 * 16 14 13 49 49 H 1.09008 * 109.47253 * 70.00012 * 16 14 13 50 50 H 0.97000 * 119.99606 * 179.97438 * 20 19 17 51 51 H 1.09000 * 109.50588 * 62.29240 * 25 7 6 52 52 H 1.09001 * 109.50119 * 182.40422 * 25 7 6 53 53 H 1.08993 * 109.46545 * 294.18368 * 26 4 2 54 54 H 1.09001 * 109.45591 * 54.16240 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4877 -0.7117 1.2335 6 6 3.9608 -1.5628 2.4142 7 6 3.4090 -0.9737 3.7153 8 7 3.8114 -1.8198 4.8466 9 6 3.8429 -1.0480 6.0962 10 6 4.2658 -1.9607 7.2490 11 1 5.2575 -2.3656 7.0469 12 8 3.3300 -3.0334 7.3751 13 6 4.2992 -1.1567 8.5502 14 7 4.7549 -2.0202 9.6479 15 6 4.3674 -1.4638 10.9510 16 6 6.2060 -2.2377 9.5787 17 6 6.6001 -3.3124 10.5589 18 1 5.8478 -3.7867 11.1716 19 6 7.9211 -3.6909 10.6727 20 7 8.8372 -3.1137 9.9262 21 14 8.4094 -5.0236 11.8872 22 1 7.2013 -5.5100 12.6006 23 1 9.0403 -6.1521 11.1566 24 1 9.3749 -4.4684 12.8695 25 6 1.8809 -0.9202 3.6344 26 6 1.4686 -0.0872 2.4185 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.8617 0.3059 1.3466 35 1 3.8671 -1.1368 0.3043 36 1 5.0502 -1.5641 2.4485 37 1 3.5988 -2.5840 2.2947 38 1 3.8027 0.0330 3.8551 39 1 3.2049 -2.6217 4.9322 40 1 2.8513 -0.6428 6.2980 41 1 4.5569 -0.2300 6.0002 42 1 2.4245 -2.7462 7.5560 43 1 3.2994 -0.7836 8.7726 44 1 4.9845 -0.3162 8.4406 45 1 4.9384 -0.5553 11.1425 46 1 3.3030 -1.2292 10.9439 47 1 4.5733 -2.1940 11.7335 48 1 6.4793 -2.5478 8.5702 49 1 6.7245 -1.3116 9.8271 50 1 9.7665 -3.3798 10.0066 51 1 1.4861 -1.9312 3.5342 52 1 1.4844 -0.4622 4.5406 53 1 1.8523 0.9273 2.5257 54 1 0.3811 -0.0589 2.3501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573953492.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:42 Heat of formation + Delta-G solvation = -73.918128 kcal Electronic energy + Delta-G solvation = -27076.626174 eV Core-core repulsion = 23467.774101 eV Total energy + Delta-G solvation = -3608.852073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.247 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68541 -39.49665 -37.72367 -36.70996 -34.60628 -34.09178 -31.88367 -31.41836 -29.85652 -29.19136 -28.12373 -26.88470 -25.36043 -24.24957 -23.82543 -22.72340 -21.81485 -21.41750 -20.21990 -18.61507 -17.52105 -17.27679 -17.10236 -16.56740 -16.34953 -16.05113 -15.80209 -15.65518 -15.35432 -15.20698 -15.07784 -14.85946 -14.40331 -14.23351 -13.98455 -13.92302 -13.77378 -13.29835 -13.15789 -12.99480 -12.89618 -12.80960 -12.63231 -12.56689 -12.51899 -12.34474 -12.31036 -12.15287 -12.08728 -11.91421 -11.73087 -11.53234 -11.43591 -11.33600 -11.29489 -10.69818 -10.61210 -9.26400 -9.16656 -8.95135 -8.20320 -6.29838 1.39469 1.41265 1.54656 2.40473 2.91203 2.98020 3.12187 3.44402 3.70547 3.80913 3.85801 3.99116 4.03908 4.10773 4.14687 4.25195 4.32257 4.34211 4.38718 4.40507 4.46075 4.57068 4.59305 4.61148 4.64261 4.71036 4.75884 4.77558 4.79106 4.84921 4.89334 4.96482 5.03037 5.03776 5.07691 5.12807 5.16776 5.25215 5.26537 5.30549 5.31238 5.34794 5.42437 5.65440 6.06293 6.14138 6.19450 6.22299 6.34884 6.50381 6.65387 6.86402 7.06248 7.39504 8.91103 Molecular weight = 313.25amu Principal moments of inertia in cm(-1) A = 0.026911 B = 0.002165 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.207870 B =12927.998871 C =13401.618195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 C -0.183 4.183 4 N -0.539 5.539 5 C 0.060 3.940 6 C -0.101 4.101 7 C 0.091 3.909 8 N -0.692 5.692 9 C 0.046 3.954 10 C 0.126 3.874 11 H 0.061 0.939 12 O -0.557 6.557 13 C 0.027 3.973 14 N -0.543 5.543 15 C 0.042 3.958 16 C 0.210 3.790 17 C -0.522 4.522 18 H 0.061 0.939 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.276 1.276 25 C -0.137 4.137 26 C 0.057 3.943 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.348 0.652 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.378 0.622 43 H 0.097 0.903 44 H 0.026 0.974 45 H 0.007 0.993 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.002 0.998 49 H -0.042 1.042 50 H 0.264 0.736 51 H 0.067 0.933 52 H 0.070 0.930 53 H 0.033 0.967 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.803 10.269 -19.291 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 C -0.242 4.242 4 N -0.264 5.264 5 C -0.068 4.068 6 C -0.140 4.140 7 C -0.019 4.019 8 N -0.324 5.324 9 C -0.084 4.084 10 C 0.066 3.934 11 H 0.079 0.921 12 O -0.363 6.363 13 C -0.103 4.103 14 N -0.266 5.266 15 C -0.106 4.106 16 C 0.084 3.916 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.202 1.202 25 C -0.177 4.177 26 C -0.071 4.071 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.168 0.832 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.226 0.774 43 H 0.116 0.884 44 H 0.044 0.956 45 H 0.025 0.975 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.020 0.980 49 H -0.024 1.024 50 H 0.073 0.927 51 H 0.086 0.914 52 H 0.088 0.912 53 H 0.052 0.948 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.806 9.036 -19.609 27.986 hybrid contribution 0.311 1.507 1.001 1.836 sum -17.495 10.543 -18.608 27.631 Atomic orbital electron populations 1.21886 0.93621 1.02292 1.02306 1.21767 0.96279 0.92501 0.92963 1.22441 1.01291 0.97867 1.02607 1.62216 1.07873 1.53976 1.02334 1.22046 0.87558 0.98433 0.98791 1.21504 1.00092 0.99650 0.92712 1.21609 0.93530 0.96043 0.90690 1.60381 1.58621 1.10352 1.03011 1.22446 1.00662 0.95826 0.89447 1.21679 0.92690 0.87360 0.91645 0.92123 1.86657 1.21416 1.34059 1.94144 1.22804 1.00882 0.93909 0.92656 1.61935 1.15534 1.46469 1.02706 1.22218 0.99878 0.96995 0.91488 1.19384 0.82940 0.93600 0.95704 1.21513 0.92910 1.20261 1.21337 0.92075 1.25959 0.96526 0.99299 0.98246 1.70097 1.01773 1.44147 1.41550 0.85314 0.78299 0.78451 0.78424 1.18734 1.20474 1.20204 1.22243 0.96247 1.01281 0.97886 1.22079 1.00477 0.95436 0.89158 0.91110 0.92363 0.92415 0.89885 0.92874 0.91115 0.92828 0.94590 0.90212 0.91841 0.91935 0.91512 0.83184 0.92727 0.90981 0.77395 0.88442 0.95566 0.97451 0.89779 0.92761 0.97971 1.02397 0.92742 0.91415 0.91189 0.94836 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.84 71.98 0.64 -0.86 16 2 C 0.07 0.90 3.03 44.92 0.14 1.04 16 3 C -0.18 -2.07 8.50 71.98 0.61 -1.46 16 4 N -0.54 -8.34 4.68 -871.08 -4.08 -12.42 16 5 C 0.06 0.98 4.89 86.33 0.42 1.40 16 6 C -0.10 -2.00 5.70 30.65 0.17 -1.82 16 7 C 0.09 1.81 2.53 45.00 0.11 1.92 16 8 N -0.69 -16.97 6.25 -491.18 -3.07 -20.04 16 9 C 0.05 1.14 5.19 86.30 0.45 1.59 16 10 C 0.13 4.17 3.31 30.59 0.10 4.27 16 11 H 0.06 2.63 6.73 -2.39 -0.02 2.61 16 12 O -0.56 -18.00 12.58 -148.98 -1.87 -19.87 16 13 C 0.03 0.90 4.65 86.30 0.40 1.31 16 14 N -0.54 -23.84 4.59 -927.06 -4.25 -28.09 16 15 C 0.04 1.63 9.31 127.69 1.19 2.82 16 16 C 0.21 11.65 4.55 85.56 0.39 12.04 16 17 C -0.52 -30.88 8.58 25.60 0.22 -30.66 16 18 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 19 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 20 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 21 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 22 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 C -0.14 -2.24 5.35 30.65 0.16 -2.07 16 26 C 0.06 0.83 4.67 86.33 0.40 1.24 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.59 6.22 -2.38 -0.01 0.58 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.66 6.54 -2.39 -0.02 0.64 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.65 6.63 -2.39 -0.02 0.63 16 34 H 0.04 0.59 6.63 -2.39 -0.02 0.57 16 35 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.38 7.80 -2.39 -0.02 1.36 16 39 H 0.35 8.58 7.84 -89.69 -0.70 7.88 16 40 H 0.05 1.06 7.51 -2.39 -0.02 1.04 16 41 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 42 H 0.38 8.52 9.05 -74.06 -0.67 7.85 16 43 H 0.10 2.56 7.75 -2.39 -0.02 2.54 16 44 H 0.03 0.93 8.00 -2.39 -0.02 0.91 16 45 H 0.01 0.27 8.08 -2.39 -0.02 0.25 16 46 H 0.08 2.50 7.85 -2.39 -0.02 2.48 16 47 H 0.05 2.25 7.01 -2.39 -0.02 2.23 16 48 H 0.00 0.14 6.60 -2.39 -0.02 0.12 16 49 H -0.04 -2.49 8.07 -2.38 -0.02 -2.51 16 50 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 51 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 52 H 0.07 1.05 7.54 -2.39 -0.02 1.03 16 53 H 0.03 0.50 6.71 -2.39 -0.02 0.48 16 54 H 0.09 1.13 5.90 -2.39 -0.01 1.11 16 Total: -1.00 -69.36 403.81 -5.60 -74.96 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.51 Total: 24.35 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.87 Total: -8.95 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -11.12 Total: -118.43 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.87 Total: -19.87 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -69.36 -5.60 -74.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573953492.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.044 kcal (2) G-P(sol) polarization free energy of solvation -69.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds