Wall clock time and date at job start Tue Mar 31 2020 11:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47036 * 2 1 4 4 N 1.46898 * 109.47076 * 119.99670 * 2 1 3 5 5 C 1.46854 * 110.99947 * 179.97438 * 4 2 1 6 6 C 1.53039 * 109.52167 * 185.84112 * 5 4 2 7 7 C 1.53118 * 109.27822 * 300.81738 * 6 5 4 8 8 N 1.46896 * 109.52329 * 177.56166 * 7 6 5 9 9 C 1.46903 * 111.00144 * 155.12862 * 8 7 6 10 10 C 1.52998 * 109.47029 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47065 * 304.99823 * 10 9 8 12 12 O 1.42904 * 109.47404 * 64.99904 * 10 9 8 13 13 C 1.53000 * 109.47079 * 184.99993 * 10 9 8 14 14 N 1.46897 * 109.47236 * 178.51116 * 13 10 9 15 15 C 1.46901 * 111.00149 * 164.01285 * 14 13 10 16 16 C 1.46906 * 110.99947 * 287.96388 * 14 13 10 17 17 C 1.50696 * 109.47061 * 170.00206 * 16 14 13 18 18 H 1.08004 * 120.00325 * 359.97438 * 17 16 14 19 19 C 1.37883 * 119.99994 * 180.02562 * 17 16 14 20 20 N 1.31511 * 119.99662 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00070 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47120 * 60.00049 * 21 19 17 23 23 H 1.48502 * 109.47027 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47171 * 299.99843 * 21 19 17 25 25 C 1.53124 * 109.21111 * 57.62487 * 7 6 5 26 26 C 1.46848 * 111.00039 * 304.20916 * 4 2 1 27 27 H 1.09005 * 109.47108 * 300.00216 * 1 2 3 28 28 H 1.08994 * 109.47517 * 60.00078 * 1 2 3 29 29 H 1.09000 * 109.46869 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46865 * 239.99787 * 2 1 3 31 31 H 1.08998 * 109.46999 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46901 * 299.99778 * 3 2 1 33 33 H 1.08992 * 109.47042 * 59.99918 * 3 2 1 34 34 H 1.09002 * 109.46143 * 65.82059 * 5 4 2 35 35 H 1.09001 * 109.45854 * 305.85827 * 5 4 2 36 36 H 1.09004 * 109.49969 * 180.88038 * 6 5 4 37 37 H 1.08998 * 109.50451 * 60.76122 * 6 5 4 38 38 H 1.08997 * 109.52564 * 297.69270 * 7 6 5 39 39 H 1.00901 * 110.99797 * 31.16985 * 8 7 6 40 40 H 1.08997 * 109.46630 * 299.99958 * 9 8 7 41 41 H 1.08997 * 109.46849 * 60.00087 * 9 8 7 42 42 H 0.96703 * 113.99443 * 59.99577 * 12 10 9 43 43 H 1.08998 * 109.46904 * 298.50591 * 13 10 9 44 44 H 1.09004 * 109.47140 * 58.50665 * 13 10 9 45 45 H 1.08998 * 109.47302 * 65.48350 * 15 14 13 46 46 H 1.08997 * 109.47250 * 185.48706 * 15 14 13 47 47 H 1.09000 * 109.46662 * 305.48178 * 15 14 13 48 48 H 1.09001 * 109.46813 * 289.99717 * 16 14 13 49 49 H 1.09000 * 109.47261 * 50.00151 * 16 14 13 50 50 H 0.97003 * 120.00094 * 179.97438 * 20 19 17 51 51 H 1.09002 * 109.49946 * 62.31879 * 25 7 6 52 52 H 1.09006 * 109.50092 * 182.43168 * 25 7 6 53 53 H 1.09002 * 109.46243 * 294.17631 * 26 4 2 54 54 H 1.08997 * 109.46439 * 54.15665 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4877 -0.7125 1.2331 6 6 3.9605 -1.5636 2.4138 7 6 3.4097 -0.9736 3.7149 8 7 3.8119 -1.8195 4.8465 9 6 3.8415 -1.0480 6.0963 10 6 4.2643 -1.9606 7.2492 11 1 3.6032 -2.8264 7.2884 12 8 5.6092 -2.3972 7.0425 13 6 4.1750 -1.1906 8.5683 14 7 4.5467 -2.0772 9.6789 15 6 4.8414 -1.3047 10.8932 16 6 3.4973 -3.0739 9.9308 17 6 4.0095 -4.1090 10.8988 18 1 5.0144 -4.0343 11.2877 19 6 3.1958 -5.1522 11.2871 20 7 1.9725 -5.2434 10.8132 21 14 3.8310 -6.4357 12.4864 22 1 4.2047 -5.7774 13.7640 23 1 2.7701 -7.4432 12.7411 24 1 5.0229 -7.1067 11.9081 25 6 1.8815 -0.9177 3.6356 26 6 1.4684 -0.0870 2.4185 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.8623 0.3049 1.3455 35 1 3.8664 -1.1382 0.3038 36 1 5.0501 -1.5655 2.4477 37 1 3.5978 -2.5846 2.2949 38 1 3.8042 0.0329 3.8543 39 1 4.7035 -2.2581 4.6711 40 1 4.5548 -0.2294 6.0010 41 1 2.8493 -0.6439 6.2973 42 1 6.2536 -1.6777 6.9970 43 1 4.8558 -0.3399 8.5391 44 1 3.1549 -0.8348 8.7130 45 1 3.9337 -0.8095 11.2380 46 1 5.2071 -1.9754 11.6707 47 1 5.6021 -0.5561 10.6719 48 1 2.6225 -2.5811 10.3551 49 1 3.2229 -3.5574 8.9932 50 1 1.4001 -5.9775 11.0861 51 1 1.4852 -1.9283 3.5365 52 1 1.4866 -0.4586 4.5419 53 1 1.8521 0.9276 2.5257 54 1 0.3809 -0.0587 2.3502 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573953493.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:45 Heat of formation + Delta-G solvation = -73.200514 kcal Electronic energy + Delta-G solvation = -27112.437277 eV Core-core repulsion = 23503.616322 eV Total energy + Delta-G solvation = -3608.820955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.247 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65961 -39.51510 -37.70213 -36.71215 -34.60116 -34.11811 -31.92219 -31.44637 -29.86708 -29.20263 -28.12724 -26.89696 -25.35917 -24.49770 -23.73946 -22.60422 -21.78595 -21.36609 -20.09988 -18.61047 -17.55510 -17.35935 -17.02074 -16.56472 -16.37136 -16.03868 -15.98014 -15.60717 -15.36469 -15.32542 -15.05774 -14.82089 -14.63676 -14.19063 -14.00160 -13.88505 -13.56698 -13.36330 -13.13316 -13.11388 -12.87251 -12.78388 -12.62472 -12.58905 -12.52635 -12.33006 -12.28394 -12.20435 -12.13030 -11.90080 -11.67493 -11.51093 -11.42175 -11.31542 -11.17513 -10.71742 -10.59151 -9.33962 -9.16802 -8.95954 -8.19242 -6.28984 1.39965 1.44337 1.51948 2.40992 2.89794 2.98102 3.13086 3.41141 3.69775 3.76743 3.88377 3.97845 4.00634 4.13291 4.16469 4.24548 4.32421 4.34128 4.39320 4.40256 4.43934 4.54919 4.58637 4.60945 4.62498 4.70969 4.75117 4.77286 4.80830 4.86003 4.89922 4.91384 5.01560 5.04453 5.07485 5.12468 5.18332 5.22903 5.26521 5.31680 5.32247 5.35511 5.44703 5.65220 6.06823 6.14076 6.19875 6.24448 6.34949 6.48853 6.65033 6.86566 7.05423 7.40112 8.91842 Molecular weight = 313.25amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.002262 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.065207 B =12374.774909 C =12855.757095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 C -0.182 4.182 4 N -0.543 5.543 5 C 0.062 3.938 6 C -0.114 4.114 7 C 0.093 3.907 8 N -0.694 5.694 9 C 0.047 3.953 10 C 0.125 3.875 11 H 0.062 0.938 12 O -0.558 6.558 13 C 0.027 3.973 14 N -0.542 5.542 15 C 0.041 3.959 16 C 0.210 3.790 17 C -0.523 4.523 18 H 0.061 0.939 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.282 1.282 24 H -0.270 1.270 25 C -0.105 4.105 26 C 0.058 3.942 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.349 0.651 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.379 0.621 43 H 0.098 0.902 44 H 0.025 0.975 45 H 0.007 0.993 46 H 0.054 0.946 47 H 0.083 0.917 48 H -0.043 1.043 49 H 0.004 0.996 50 H 0.264 0.736 51 H 0.057 0.943 52 H 0.058 0.942 53 H 0.037 0.963 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 16.532 -22.372 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 C -0.241 4.241 4 N -0.268 5.268 5 C -0.066 4.066 6 C -0.152 4.152 7 C -0.016 4.016 8 N -0.327 5.327 9 C -0.083 4.083 10 C 0.065 3.935 11 H 0.080 0.920 12 O -0.364 6.364 13 C -0.102 4.102 14 N -0.266 5.266 15 C -0.107 4.107 16 C 0.084 3.916 17 C -0.562 4.562 18 H 0.079 0.921 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.208 1.208 24 H -0.195 1.195 25 C -0.143 4.143 26 C -0.070 4.070 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.168 0.832 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.227 0.773 43 H 0.116 0.884 44 H 0.044 0.956 45 H 0.026 0.974 46 H 0.073 0.927 47 H 0.102 0.898 48 H -0.025 1.025 49 H 0.022 0.978 50 H 0.073 0.927 51 H 0.075 0.925 52 H 0.077 0.923 53 H 0.055 0.945 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.605 14.862 -22.396 26.926 hybrid contribution 0.265 1.361 1.005 1.713 sum 1.870 16.224 -21.391 26.912 Atomic orbital electron populations 1.21901 0.94006 1.02167 1.02260 1.21758 0.96051 0.92682 0.92887 1.22434 1.01439 0.97643 1.02584 1.62166 1.08222 1.54194 1.02242 1.22029 0.87378 0.98500 0.98736 1.21722 1.00278 1.00161 0.93018 1.21538 0.95634 0.94447 0.90008 1.60315 1.37251 1.33229 1.01913 1.22475 1.01467 0.94588 0.89760 1.21698 0.83849 0.96535 0.91426 0.91971 1.86657 1.16822 1.37847 1.95054 1.22787 0.99336 0.95723 0.92354 1.61952 1.43512 1.14981 1.06142 1.22221 0.99021 0.96826 0.92622 1.19374 0.87443 0.90039 0.94777 1.21448 0.99599 1.09234 1.25889 0.92053 1.25954 0.95027 1.00315 0.98661 1.70086 1.08607 1.32996 1.45880 0.85428 0.77922 0.78184 0.79032 1.19018 1.20759 1.19476 1.21567 0.95277 1.00561 0.96923 1.22091 1.00366 0.95456 0.89114 0.92637 0.90953 0.92635 0.89636 0.92481 0.91075 0.92964 0.94151 0.89797 0.90482 0.91708 0.93916 0.83175 0.92860 0.90856 0.77336 0.88426 0.95648 0.97424 0.92676 0.89807 1.02531 0.97836 0.92735 0.92464 0.92335 0.94516 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.84 71.98 0.64 -1.16 16 2 C 0.07 0.97 3.03 44.92 0.14 1.11 16 3 C -0.18 -2.03 8.51 71.98 0.61 -1.42 16 4 N -0.54 -9.10 4.68 -871.09 -4.08 -13.18 16 5 C 0.06 0.94 4.89 86.32 0.42 1.36 16 6 C -0.11 -2.02 5.36 30.65 0.16 -1.86 16 7 C 0.09 1.90 2.56 45.00 0.12 2.02 16 8 N -0.69 -17.46 6.31 -491.17 -3.10 -20.56 16 9 C 0.05 1.19 5.16 86.30 0.45 1.63 16 10 C 0.13 4.19 3.23 30.59 0.10 4.28 16 11 H 0.06 2.73 6.55 -2.39 -0.02 2.72 16 12 O -0.56 -18.29 12.75 -148.98 -1.90 -20.19 16 13 C 0.03 0.93 4.63 86.30 0.40 1.33 16 14 N -0.54 -23.91 4.60 -927.05 -4.27 -28.17 16 15 C 0.04 1.59 9.32 127.69 1.19 2.78 16 16 C 0.21 11.70 4.57 85.55 0.39 12.09 16 17 C -0.52 -31.01 8.54 25.60 0.22 -30.79 16 18 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 19 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 20 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 21 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 C -0.10 -2.27 5.59 30.65 0.17 -2.10 16 26 C 0.06 1.01 4.67 86.33 0.40 1.42 16 27 H 0.05 0.71 6.22 -2.38 -0.01 0.69 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 0.64 6.54 -2.39 -0.02 0.62 16 32 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.05 0.64 6.63 -2.39 -0.02 0.63 16 34 H 0.04 0.57 6.63 -2.39 -0.02 0.56 16 35 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 0.82 7.80 -2.39 -0.02 0.80 16 39 H 0.35 8.63 7.92 -89.69 -0.71 7.92 16 40 H 0.05 1.07 8.06 -2.39 -0.02 1.05 16 41 H 0.07 1.90 7.50 -2.39 -0.02 1.88 16 42 H 0.38 8.66 9.05 -74.06 -0.67 7.99 16 43 H 0.10 2.60 7.88 -2.39 -0.02 2.58 16 44 H 0.03 0.91 8.05 -2.39 -0.02 0.89 16 45 H 0.01 0.28 8.13 -2.39 -0.02 0.26 16 46 H 0.05 2.30 6.90 -2.39 -0.02 2.29 16 47 H 0.08 2.52 7.97 -2.39 -0.02 2.50 16 48 H -0.04 -2.59 8.11 -2.39 -0.02 -2.61 16 49 H 0.00 0.22 6.38 -2.39 -0.02 0.20 16 50 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 51 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.06 1.31 7.53 -2.38 -0.02 1.29 16 53 H 0.04 0.61 6.71 -2.39 -0.02 0.59 16 54 H 0.08 1.40 5.90 -2.39 -0.01 1.38 16 Total: -1.00 -70.09 403.82 -5.68 -75.77 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.52 Total: 25.50 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.87 Total: -8.96 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -11.16 Total: -120.09 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.90 Total: -20.19 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -70.09 -5.68 -75.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573953493.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.573 kcal (2) G-P(sol) polarization free energy of solvation -70.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds