Wall clock time and date at job start Tue Mar 31 2020 11:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46944 * 2 1 4 4 C 1.46505 * 119.99617 * 269.99346 * 3 2 1 5 5 C 1.52999 * 109.47151 * 270.00009 * 4 3 2 6 6 H 1.08999 * 109.46577 * 60.00530 * 5 4 3 7 7 C 1.52997 * 109.46708 * 179.97438 * 5 4 3 8 8 O 1.42897 * 109.47362 * 300.00143 * 5 4 3 9 9 C 1.42895 * 113.99785 * 149.99816 * 8 5 4 10 10 C 1.34773 * 120.00158 * 90.00072 * 3 2 1 11 11 O 1.21587 * 119.99684 * 180.02562 * 10 3 2 12 12 N 1.34774 * 120.00300 * 359.97438 * 10 3 2 13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 3 14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10 27 27 H 1.09002 * 109.46416 * 60.00411 * 1 2 3 28 28 H 1.09000 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47317 * 300.00128 * 1 2 3 30 30 H 1.08991 * 109.47428 * 239.99505 * 2 1 3 31 31 H 1.09006 * 109.47102 * 119.99372 * 2 1 3 32 32 H 1.08995 * 109.46878 * 30.00515 * 4 3 2 33 33 H 1.08997 * 109.46818 * 149.99995 * 4 3 2 34 34 H 1.09001 * 109.47597 * 300.00343 * 7 5 4 35 35 H 1.09006 * 109.47507 * 60.00411 * 7 5 4 36 36 H 1.08999 * 109.47065 * 179.97438 * 7 5 4 37 37 H 1.09002 * 109.46799 * 179.97438 * 9 8 5 38 38 H 1.08996 * 109.47591 * 300.00527 * 9 8 5 39 39 H 1.09004 * 109.46757 * 60.00500 * 9 8 5 40 40 H 0.97005 * 119.99791 * 0.02562 * 12 10 3 41 41 H 1.08998 * 109.45866 * 324.97703 * 13 12 10 42 42 H 1.09002 * 109.39343 * 61.36176 * 14 13 12 43 43 H 1.09003 * 109.62467 * 301.25403 * 14 13 12 44 44 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 45 45 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 46 46 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 48 48 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 49 49 H 1.09002 * 109.49555 * 58.67538 * 26 13 12 50 50 H 1.08992 * 109.52043 * 298.59539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8314 -1.7103 6 1 3.8745 0.7621 -1.8406 7 6 3.9624 2.5520 -3.0357 8 8 4.6001 2.3350 -0.7145 9 6 5.8405 1.6300 -0.6357 10 6 2.2430 2.0166 1.1671 11 8 2.6478 3.1631 1.1670 12 7 2.0179 1.3815 2.3344 13 6 2.2615 2.0724 3.6031 14 6 1.0288 2.8986 3.9782 15 6 1.2986 3.6438 5.2892 16 7 1.7118 2.6731 6.3119 17 6 1.0660 2.6125 7.5178 18 1 1.0283 1.6816 8.0640 19 6 0.4597 3.7475 8.0382 20 7 0.7732 4.9359 7.5671 21 14 -0.8014 3.5886 9.4071 22 1 -0.1717 2.9449 10.5880 23 1 -1.2964 4.9371 9.7831 24 1 -1.9390 2.7572 8.9381 25 6 2.8316 1.7690 6.0160 26 6 2.5436 1.0418 4.6988 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8898 31 1 1.8934 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1386 34 1 3.2816 2.1675 -3.7952 35 1 3.7953 3.6213 -2.9060 36 1 4.9920 2.3811 -3.3501 37 1 6.4615 2.0733 0.1428 38 1 5.6494 0.5838 -0.3968 39 1 6.3571 1.6956 -1.5933 40 1 1.6946 0.4670 2.3344 41 1 3.1211 2.7341 3.4970 42 1 0.1736 2.2350 4.1063 43 1 0.8161 3.6184 3.1877 44 1 0.3909 4.1524 5.6139 45 1 2.0927 4.3748 5.1372 46 1 0.3499 5.7291 7.9310 47 1 3.7518 2.3456 5.9216 48 1 2.9370 1.0421 6.8216 49 1 3.4084 0.4403 4.4186 50 1 1.6752 0.3949 4.8226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589786455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:01 Heat of formation + Delta-G solvation = -51.592836 kcal Electronic energy + Delta-G solvation = -28013.783103 eV Core-core repulsion = 24270.066033 eV Total energy + Delta-G solvation = -3743.717070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.18081 -38.34035 -37.32664 -35.72872 -34.32250 -32.66022 -31.77586 -30.35486 -29.89970 -29.31565 -26.89488 -26.15745 -24.70166 -23.49950 -22.13147 -22.05593 -21.28701 -19.61929 -19.13437 -17.91961 -16.85686 -16.57987 -16.43070 -15.71857 -15.14589 -14.91112 -14.68711 -14.23630 -13.99439 -13.93186 -13.69204 -13.40595 -13.18138 -13.09150 -12.90631 -12.73867 -12.57941 -12.33873 -12.30253 -12.15376 -11.77722 -11.60236 -11.40762 -11.35948 -11.03335 -10.88173 -10.81001 -10.67112 -10.28755 -10.17743 -9.97439 -9.76998 -9.69625 -9.66412 -9.42866 -8.67567 -8.46146 -8.24705 -6.61436 -5.72367 -3.15516 2.80782 3.41913 3.47792 3.48716 3.57887 3.73206 4.13593 4.54270 4.67292 4.68158 4.86263 4.93906 5.04939 5.09723 5.17076 5.21988 5.27936 5.40017 5.41004 5.47703 5.52075 5.54928 5.57119 5.59562 5.64794 5.75941 5.78423 5.94579 5.95014 5.99781 6.19643 6.32675 6.44389 6.55436 6.57947 6.72864 6.74188 6.88058 7.00815 7.06870 7.19209 7.24961 7.48052 7.76912 7.85056 8.28082 8.51505 9.01352 9.27255 9.90748 10.48043 11.36020 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.003068 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.081720 B = 9125.368565 C = 9456.791534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 N -0.633 5.633 4 C 0.137 3.863 5 C 0.067 3.933 6 H 0.055 0.945 7 C -0.173 4.173 8 O -0.357 6.357 9 C 0.033 3.967 10 C 0.707 3.293 11 O -0.569 6.569 12 N -0.743 5.743 13 C 0.170 3.830 14 C -0.145 4.145 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.149 3.851 26 C -0.137 4.137 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.387 0.613 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.254 0.746 47 H 0.020 0.980 48 H 0.057 0.943 49 H 0.053 0.947 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -12.254 -21.384 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 N -0.371 5.371 4 C 0.013 3.987 5 C 0.008 3.992 6 H 0.073 0.927 7 C -0.231 4.231 8 O -0.275 6.275 9 C -0.064 4.064 10 C 0.409 3.591 11 O -0.445 6.445 12 N -0.398 5.398 13 C 0.066 3.934 14 C -0.186 4.186 15 C 0.048 3.952 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.022 3.978 26 C -0.177 4.177 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.221 0.779 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.152 -11.043 -21.158 24.225 hybrid contribution -0.712 -0.863 0.401 1.188 sum 3.441 -11.906 -20.757 24.175 Atomic orbital electron populations 1.22248 0.95906 1.02127 1.02965 1.21427 0.94430 0.83225 1.02533 1.47084 1.71016 1.13882 1.05075 1.21392 0.93198 0.99734 0.84373 1.22595 0.91432 0.96798 0.88424 0.92741 1.22234 1.01888 1.02289 0.96708 1.88192 1.26587 1.56393 1.56338 1.22724 0.86791 0.96104 1.00751 1.15838 0.78471 0.84669 0.80146 1.90934 1.51436 1.16358 1.85736 1.45644 1.71995 1.17022 1.05116 1.20850 0.98982 0.93654 0.79938 1.22563 0.96711 0.99181 1.00104 1.20746 1.00368 0.89900 0.84192 1.44094 1.33802 1.39976 1.13656 1.19123 1.28676 0.93857 0.96747 0.91767 1.25061 1.01191 0.95080 0.98289 1.70031 1.43105 0.96844 1.44511 0.86378 0.81855 0.76624 0.81928 1.20921 1.21661 1.21101 1.20828 0.90918 0.92984 0.93056 1.22322 1.00523 0.97842 0.97061 0.92322 0.91649 0.91942 0.90770 0.90967 0.89801 0.88979 0.91727 0.91367 0.92448 0.89825 0.94715 0.94716 0.77913 0.90195 0.93037 0.92843 0.89446 0.96164 0.93560 0.96232 0.92472 0.92841 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.11 0.90 5.89 -4.04 -0.02 0.87 16 3 N -0.63 -7.61 2.43 -179.42 -0.44 -8.05 16 4 C 0.14 1.46 5.18 -4.04 -0.02 1.44 16 5 C 0.07 0.68 2.99 -26.73 -0.08 0.60 16 6 H 0.05 0.47 7.79 -51.93 -0.40 0.07 16 7 C -0.17 -1.39 9.53 37.16 0.35 -1.03 16 8 O -0.36 -4.92 8.97 -43.93 -0.39 -5.31 16 9 C 0.03 0.35 10.82 101.05 1.09 1.44 16 10 C 0.71 11.64 7.75 -86.92 -0.67 10.96 16 11 O -0.57 -11.94 14.80 -3.41 -0.05 -11.99 16 12 N -0.74 -11.44 4.94 -58.62 -0.29 -11.73 16 13 C 0.17 3.15 2.41 -67.87 -0.16 2.99 16 14 C -0.15 -3.05 5.66 -26.59 -0.15 -3.20 16 15 C 0.17 4.40 5.30 -3.71 -0.02 4.38 16 16 N -0.59 -15.18 3.00 -172.31 -0.52 -15.70 16 17 C -0.25 -7.07 9.58 -15.06 -0.14 -7.22 16 18 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.82 11.20 55.49 0.62 -26.20 16 21 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 26 C -0.14 -2.39 5.55 -26.61 -0.15 -2.54 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 31 H 0.07 0.58 6.36 -51.93 -0.33 0.25 16 32 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.09 1.22 7.42 -51.93 -0.39 0.84 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 39 H 0.03 0.30 7.87 -51.93 -0.41 -0.11 16 40 H 0.39 4.88 6.33 -40.82 -0.26 4.62 16 41 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.16 7.93 -51.92 -0.41 0.75 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -34.07 391.91 -9.09 -43.16 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -9.20 Total: 2.15 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 0.29 Total: 10.84 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.62 Total: -61.68 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.44 Total: -17.30 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.07 -9.09 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589786455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.436 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds