Wall clock time and date at job start Tue Mar 31 2020 11:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46944 * 2 1 4 4 C 1.46505 * 119.99617 * 269.99346 * 3 2 1 5 5 C 1.52999 * 109.47151 * 270.00009 * 4 3 2 6 6 H 1.08999 * 109.46577 * 60.00530 * 5 4 3 7 7 C 1.52997 * 109.46708 * 179.97438 * 5 4 3 8 8 O 1.42897 * 109.47362 * 300.00143 * 5 4 3 9 9 C 1.42895 * 113.99785 * 149.99816 * 8 5 4 10 10 C 1.34773 * 120.00158 * 90.00072 * 3 2 1 11 11 O 1.21587 * 119.99684 * 180.02562 * 10 3 2 12 12 N 1.34774 * 120.00300 * 359.97438 * 10 3 2 13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 3 14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10 27 27 H 1.09002 * 109.46416 * 60.00411 * 1 2 3 28 28 H 1.09000 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47317 * 300.00128 * 1 2 3 30 30 H 1.08991 * 109.47428 * 239.99505 * 2 1 3 31 31 H 1.09006 * 109.47102 * 119.99372 * 2 1 3 32 32 H 1.08995 * 109.46878 * 30.00515 * 4 3 2 33 33 H 1.08997 * 109.46818 * 149.99995 * 4 3 2 34 34 H 1.09001 * 109.47597 * 300.00343 * 7 5 4 35 35 H 1.09006 * 109.47507 * 60.00411 * 7 5 4 36 36 H 1.08999 * 109.47065 * 179.97438 * 7 5 4 37 37 H 1.09002 * 109.46799 * 179.97438 * 9 8 5 38 38 H 1.08996 * 109.47591 * 300.00527 * 9 8 5 39 39 H 1.09004 * 109.46757 * 60.00500 * 9 8 5 40 40 H 0.97005 * 119.99791 * 0.02562 * 12 10 3 41 41 H 1.08998 * 109.45866 * 324.97703 * 13 12 10 42 42 H 1.09002 * 109.39343 * 61.36176 * 14 13 12 43 43 H 1.09003 * 109.62467 * 301.25403 * 14 13 12 44 44 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 45 45 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 46 46 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 48 48 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 49 49 H 1.09002 * 109.49555 * 58.67538 * 26 13 12 50 50 H 1.08992 * 109.52043 * 298.59539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8314 -1.7103 6 1 3.8745 0.7621 -1.8406 7 6 3.9624 2.5520 -3.0357 8 8 4.6001 2.3350 -0.7145 9 6 5.8405 1.6300 -0.6357 10 6 2.2430 2.0166 1.1671 11 8 2.6478 3.1631 1.1670 12 7 2.0179 1.3815 2.3344 13 6 2.2615 2.0724 3.6031 14 6 1.0288 2.8986 3.9782 15 6 1.2986 3.6438 5.2892 16 7 1.7118 2.6731 6.3119 17 6 1.0660 2.6125 7.5178 18 1 1.0283 1.6816 8.0640 19 6 0.4597 3.7475 8.0382 20 7 0.7732 4.9359 7.5671 21 14 -0.8014 3.5886 9.4071 22 1 -0.1717 2.9449 10.5880 23 1 -1.2964 4.9371 9.7831 24 1 -1.9390 2.7572 8.9381 25 6 2.8316 1.7690 6.0160 26 6 2.5436 1.0418 4.6988 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8898 31 1 1.8934 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1386 34 1 3.2816 2.1675 -3.7952 35 1 3.7953 3.6213 -2.9060 36 1 4.9920 2.3811 -3.3501 37 1 6.4615 2.0733 0.1428 38 1 5.6494 0.5838 -0.3968 39 1 6.3571 1.6956 -1.5933 40 1 1.6946 0.4670 2.3344 41 1 3.1211 2.7341 3.4970 42 1 0.1736 2.2350 4.1063 43 1 0.8161 3.6184 3.1877 44 1 0.3909 4.1524 5.6139 45 1 2.0927 4.3748 5.1372 46 1 0.3499 5.7291 7.9310 47 1 3.7518 2.3456 5.9216 48 1 2.9370 1.0421 6.8216 49 1 3.4084 0.4403 4.4186 50 1 1.6752 0.3949 4.8226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589786455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:00 Heat of formation + Delta-G solvation = -73.856176 kcal Electronic energy + Delta-G solvation = -28014.748514 eV Core-core repulsion = 24270.066033 eV Total energy + Delta-G solvation = -3744.682481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.36893 -39.49025 -38.75530 -36.82775 -35.96823 -33.98809 -33.11577 -31.73553 -31.26047 -30.88298 -27.76061 -27.29742 -26.34411 -24.38631 -23.88344 -23.53100 -22.33259 -21.16243 -20.49076 -19.13610 -18.56670 -17.67293 -17.45891 -16.86252 -16.67835 -16.17753 -15.81214 -15.72235 -15.35456 -15.13756 -15.08891 -14.74053 -14.73338 -14.39672 -14.00509 -13.89769 -13.67922 -13.37226 -13.18789 -13.16886 -13.00244 -12.90885 -12.63925 -12.55450 -12.51555 -12.35935 -12.12319 -12.10022 -11.96501 -11.82144 -11.64947 -11.51080 -11.34942 -10.98546 -10.56612 -10.55948 -9.98815 -9.39758 -8.70775 -7.86133 -5.33187 1.47799 1.50963 1.57782 1.73693 2.34532 2.52542 2.92527 3.07049 3.29930 3.67205 3.89492 3.95521 4.04685 4.11533 4.14780 4.26417 4.36202 4.36523 4.41756 4.43734 4.48286 4.53869 4.57355 4.67929 4.76848 4.81034 4.82763 4.85106 4.89806 4.93203 4.98182 5.03387 5.08483 5.09075 5.14280 5.30231 5.31912 5.38646 5.45654 5.63850 5.68720 5.69266 5.72001 6.04045 6.39225 6.44434 7.13031 7.14500 7.78018 7.84750 8.38494 9.20904 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.003068 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.081720 B = 9125.368565 C = 9456.791534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.624 5.624 4 C 0.132 3.868 5 C 0.064 3.936 6 H 0.077 0.923 7 C -0.167 4.167 8 O -0.399 6.399 9 C 0.031 3.969 10 C 0.701 3.299 11 O -0.623 6.623 12 N -0.730 5.730 13 C 0.183 3.817 14 C -0.127 4.127 15 C 0.185 3.815 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.075 0.925 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.276 1.276 25 C 0.143 3.857 26 C -0.119 4.119 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.405 0.595 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.039 0.961 44 H 0.054 0.946 45 H -0.014 1.014 46 H 0.249 0.751 47 H 0.009 0.991 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 -16.087 -22.958 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.361 5.361 4 C 0.009 3.991 5 C 0.005 3.995 6 H 0.095 0.905 7 C -0.225 4.225 8 O -0.319 6.319 9 C -0.065 4.065 10 C 0.403 3.597 11 O -0.502 6.502 12 N -0.386 5.386 13 C 0.077 3.923 14 C -0.168 4.168 15 C 0.058 3.942 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.093 0.907 19 C -0.250 4.250 20 N -0.585 5.585 21 Si 0.799 3.201 22 H -0.197 1.197 23 H -0.224 1.224 24 H -0.202 1.202 25 C 0.017 3.983 26 C -0.158 4.158 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.242 0.758 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.004 0.996 46 H 0.058 0.942 47 H 0.027 0.973 48 H 0.088 0.912 49 H 0.107 0.893 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.674 -14.975 -22.780 27.508 hybrid contribution -0.520 0.314 0.820 1.020 sum 3.154 -14.661 -21.961 26.592 Atomic orbital electron populations 1.22209 0.95398 1.03314 1.01854 1.21748 0.94744 0.80979 1.04528 1.47129 1.69779 1.15227 1.03935 1.21606 0.94927 0.97983 0.84583 1.22761 0.90179 0.98159 0.88355 0.90475 1.22193 1.02969 1.00977 0.96393 1.88156 1.27989 1.57842 1.57863 1.22787 0.86000 0.96221 1.01489 1.16085 0.78125 0.84171 0.81332 1.90907 1.53753 1.18939 1.86650 1.45243 1.72015 1.17536 1.03829 1.20428 0.96223 0.93653 0.81949 1.22295 0.98333 0.98919 0.97208 1.20431 0.97537 0.89915 0.86282 1.44338 1.35206 1.40428 1.13260 1.19550 1.28389 0.94140 0.97240 0.90744 1.25914 1.03296 0.94731 1.01095 1.70217 1.44474 0.97499 1.46337 0.85282 0.79374 0.76189 0.79242 1.19740 1.22404 1.20186 1.21033 0.89100 0.92549 0.95656 1.22112 1.02619 0.97105 0.94006 0.92044 0.89275 0.94485 0.87431 0.90332 0.85788 0.92509 0.88981 0.93300 0.91912 0.91022 0.93623 0.92796 0.75781 0.93300 0.92267 0.94179 0.92755 0.99613 0.94197 0.97277 0.91211 0.89303 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 71.98 0.74 -1.37 16 2 C 0.10 1.31 5.89 86.38 0.51 1.82 16 3 N -0.62 -13.87 2.43 -839.83 -2.04 -15.91 16 4 C 0.13 2.61 5.18 86.38 0.45 3.06 16 5 C 0.06 1.17 2.99 30.59 0.09 1.26 16 6 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 7 C -0.17 -2.36 9.53 71.98 0.69 -1.68 16 8 O -0.40 -10.86 8.97 -140.66 -1.26 -12.12 16 9 C 0.03 0.63 10.82 113.37 1.23 1.86 16 10 C 0.70 22.89 7.75 179.06 1.39 24.27 16 11 O -0.62 -27.22 14.80 4.33 0.06 -27.15 16 12 N -0.73 -21.60 4.94 -457.64 -2.26 -23.87 16 13 C 0.18 6.78 2.41 45.03 0.11 6.89 16 14 C -0.13 -5.50 5.66 30.69 0.17 -5.32 16 15 C 0.19 9.82 5.30 86.37 0.46 10.27 16 16 N -0.61 -31.72 3.00 -699.07 -2.09 -33.81 16 17 C -0.26 -14.70 9.58 84.03 0.81 -13.89 16 18 H 0.07 3.94 7.88 -2.91 -0.02 3.91 16 19 C -0.06 -3.18 4.92 84.86 0.42 -2.76 16 20 N -0.94 -58.15 11.20 21.65 0.24 -57.91 16 21 Si 0.97 45.65 29.59 68.60 2.03 47.68 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 C 0.14 5.97 6.52 86.36 0.56 6.53 16 26 C -0.12 -3.88 5.55 30.67 0.17 -3.71 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.76 8.07 -2.39 -0.02 0.74 16 31 H 0.08 0.94 6.36 -2.38 -0.02 0.92 16 32 H 0.12 1.39 8.07 -2.39 -0.02 1.37 16 33 H 0.06 1.54 7.42 -2.39 -0.02 1.53 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.06 0.82 7.87 -2.39 -0.02 0.80 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 0.78 8.08 -2.39 -0.02 0.77 16 39 H 0.05 0.84 7.87 -2.38 -0.02 0.82 16 40 H 0.40 9.09 6.33 -92.70 -0.59 8.50 16 41 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 42 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 3.22 6.06 -2.39 -0.01 3.20 16 45 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 46 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.07 2.73 7.93 -2.38 -0.02 2.71 16 49 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -79.17 391.91 2.77 -76.40 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.31 Total: 19.45 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 7.78 Total: 27.24 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -6.15 Total: -131.49 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.20 Total: -39.28 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -79.17 2.77 -76.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589786455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.541 kcal (2) G-P(sol) polarization free energy of solvation -79.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds