Wall clock time and date at job start Tue Mar 31 2020 11:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47268 * 2 1 4 4 C 1.52999 * 109.47262 * 239.99929 * 2 1 3 5 5 C 1.50703 * 109.47063 * 60.00099 * 4 2 1 6 6 H 1.07999 * 119.99625 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99907 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99854 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99639 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46838 * 90.00035 * 9 7 5 11 11 H 1.48501 * 109.46896 * 209.99572 * 9 7 5 12 12 H 1.48500 * 109.47356 * 329.99850 * 9 7 5 13 13 C 1.53008 * 109.47259 * 119.99778 * 2 1 3 14 14 N 1.46901 * 109.46873 * 300.00267 * 13 2 1 15 15 C 1.46904 * 110.99485 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.46853 * 60.00549 * 16 15 14 18 18 C 1.52997 * 109.47748 * 300.00714 * 16 15 14 19 19 C 1.53002 * 109.47370 * 179.97438 * 16 15 14 20 20 O 1.42903 * 109.56686 * 59.84895 * 19 16 15 21 21 C 1.53168 * 109.52487 * 180.02562 * 19 16 15 22 22 C 1.53177 * 109.03858 * 176.89277 * 21 19 16 23 23 C 1.53096 * 109.16164 * 303.01870 * 22 21 19 24 24 O 1.42908 * 109.41214 * 57.60571 * 23 22 21 25 25 C 1.42897 * 114.09789 * 298.84248 * 24 23 22 26 26 H 1.09005 * 109.47008 * 300.00077 * 1 2 3 27 27 H 1.09003 * 109.47274 * 59.99990 * 1 2 3 28 28 H 1.09000 * 109.47226 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47092 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46981 * 300.00189 * 3 2 1 31 31 H 1.09001 * 109.46683 * 60.00011 * 3 2 1 32 32 H 1.09000 * 109.47534 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47165 * 299.99918 * 4 2 1 34 34 H 0.97006 * 119.99894 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47225 * 179.97438 * 13 2 1 36 36 H 1.08999 * 109.46521 * 59.99921 * 13 2 1 37 37 H 1.00893 * 111.00156 * 56.04738 * 14 13 2 38 38 H 1.09007 * 109.47135 * 60.00024 * 15 14 13 39 39 H 1.09002 * 109.47200 * 299.99888 * 15 14 13 40 40 H 1.09001 * 109.47470 * 179.97438 * 17 16 15 41 41 H 1.09005 * 109.47340 * 299.99660 * 17 16 15 42 42 H 1.09002 * 109.47291 * 59.99551 * 17 16 15 43 43 H 1.09007 * 109.46704 * 299.99625 * 18 16 15 44 44 H 1.09002 * 109.47191 * 59.99166 * 18 16 15 45 45 H 1.09000 * 109.47394 * 180.02562 * 18 16 15 46 46 H 0.96702 * 113.99514 * 180.15779 * 20 19 16 47 47 H 1.09002 * 109.54603 * 57.02434 * 21 19 16 48 48 H 1.09003 * 109.61847 * 296.80485 * 21 19 16 49 49 H 1.09003 * 109.52410 * 183.11691 * 22 21 19 50 50 H 1.08996 * 109.52226 * 62.92248 * 22 21 19 51 51 H 1.08993 * 109.48033 * 177.59323 * 23 22 21 52 52 H 1.09001 * 109.48095 * 297.62604 * 23 22 21 53 53 H 1.09002 * 109.48246 * 301.17405 * 25 24 23 54 54 H 1.09006 * 109.47919 * 181.14281 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8704 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8526 9 14 1.2471 0.3980 -5.2572 10 1 2.2251 1.4396 -5.6619 11 1 1.0819 -0.5814 -6.3611 12 1 -0.0610 1.0355 -4.9610 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 6 1.4923 0.0534 4.8955 17 6 -0.0375 0.0540 4.8720 18 6 2.0033 1.4953 4.8720 19 6 1.9819 -0.6411 6.1680 20 8 3.4107 -0.6466 6.1907 21 6 1.4529 0.1071 7.3954 22 6 1.8841 -0.6409 8.6606 23 6 1.3706 -2.0815 8.5924 24 8 1.8747 -2.7100 7.4121 25 6 1.4646 -2.0817 6.1960 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7489 -1.2492 34 1 2.8608 -1.8829 -4.7336 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 0.5438 0.0413 2.4402 38 1 3.1108 -0.6953 3.6873 39 1 1.6571 -1.7225 3.6869 40 1 -0.4142 0.5869 5.7451 41 1 -0.3868 0.5485 3.9655 42 1 -0.4016 -0.9733 4.8887 43 1 3.0932 1.4949 4.8888 44 1 1.6541 1.9898 3.9655 45 1 1.6271 2.0284 5.7452 46 1 3.7900 -1.0746 6.9705 47 1 0.3647 0.1542 7.3527 48 1 1.8612 1.1176 7.4121 49 1 1.4652 -0.1460 9.5369 50 1 2.9719 -0.6448 8.7285 51 1 1.7108 -2.6306 9.4703 52 1 0.2809 -2.0782 8.5653 53 1 0.3762 -2.0783 6.1375 54 1 1.8727 -2.6310 5.3474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594997056.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:50 Heat of formation + Delta-G solvation = -142.129937 kcal Electronic energy + Delta-G solvation = -28394.888517 eV Core-core repulsion = 24750.785807 eV Total energy + Delta-G solvation = -3644.102710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63444 -39.35028 -38.08110 -36.40802 -34.86385 -33.95889 -33.20236 -30.38088 -29.08924 -28.19647 -27.86319 -27.63534 -26.42758 -25.25680 -24.67741 -23.62758 -21.44200 -19.76514 -19.22838 -18.39961 -18.33133 -17.44312 -16.90824 -16.61289 -16.56808 -16.03076 -15.92467 -15.56719 -15.05955 -14.90624 -14.84089 -14.52756 -14.28152 -14.12045 -13.94966 -13.86814 -13.49745 -13.41450 -13.06479 -12.93576 -12.84654 -12.74762 -12.66246 -12.48089 -12.37108 -12.25118 -12.20408 -12.08500 -11.94877 -11.75918 -11.68188 -11.58801 -11.36559 -11.27961 -11.01018 -10.84493 -10.61273 -10.50528 -10.12003 -9.22857 -8.13638 -6.20860 1.40885 1.41779 1.52245 2.43931 2.84863 3.19214 3.20186 3.26741 3.63896 3.78993 3.81764 3.97756 4.02350 4.10461 4.16757 4.20843 4.26409 4.36206 4.39901 4.44870 4.54206 4.70152 4.72030 4.74629 4.76634 4.82044 4.88276 4.90075 4.93542 4.96556 5.02150 5.07823 5.09137 5.14246 5.16856 5.22138 5.22722 5.24908 5.31234 5.48295 5.52173 5.54341 5.59430 5.63177 5.66791 5.88402 5.93166 6.09950 6.18022 6.37195 6.59747 6.82073 6.94424 7.46454 8.98913 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.032256 B = 0.002538 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.856593 B =11031.689694 C =11264.937474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.053 4.053 3 C -0.106 4.106 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.067 0.933 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.083 3.917 14 N -0.675 5.675 15 C 0.072 3.928 16 C -0.038 4.038 17 C -0.152 4.152 18 C -0.123 4.123 19 C 0.118 3.882 20 O -0.563 6.563 21 C -0.148 4.148 22 C -0.156 4.156 23 C 0.048 3.952 24 O -0.400 6.400 25 C 0.031 3.969 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.026 0.974 30 H 0.039 0.961 31 H 0.069 0.931 32 H -0.019 1.019 33 H -0.017 1.017 34 H 0.259 0.741 35 H 0.049 0.951 36 H 0.014 0.986 37 H 0.344 0.656 38 H 0.056 0.944 39 H 0.024 0.976 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.381 0.619 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.070 0.930 51 H 0.107 0.893 52 H 0.060 0.940 53 H 0.073 0.927 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.238 3.365 28.827 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.053 4.053 3 C -0.163 4.163 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.086 0.914 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.185 1.185 13 C -0.047 4.047 14 N -0.308 5.308 15 C -0.057 4.057 16 C -0.038 4.038 17 C -0.209 4.209 18 C -0.180 4.180 19 C 0.076 3.924 20 O -0.371 6.371 21 C -0.186 4.186 22 C -0.193 4.193 23 C -0.028 4.028 24 O -0.319 6.319 25 C -0.046 4.046 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.088 0.912 32 H -0.001 1.001 33 H 0.001 0.999 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.165 0.835 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.230 0.770 47 H 0.106 0.894 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.089 0.911 51 H 0.125 0.875 52 H 0.078 0.922 53 H 0.091 0.909 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.635 3.871 28.152 28.970 hybrid contribution -0.243 -1.079 -0.890 1.420 sum -5.878 2.792 27.261 28.027 Atomic orbital electron populations 1.21675 0.94461 1.00401 1.01283 1.20470 0.95927 0.96019 0.92926 1.21492 0.98916 0.95274 1.00598 1.19019 0.93917 0.94017 0.92923 1.21614 1.30195 1.11860 0.91349 0.91448 1.25954 0.95759 0.95906 1.02683 1.70120 1.38952 1.25000 1.24015 0.85553 0.79149 0.78177 0.78827 1.20180 1.21274 1.18487 1.21787 0.98785 0.94168 0.89928 1.60513 1.16625 1.53242 1.00434 1.21950 0.99847 0.94516 0.89367 1.20391 0.96012 0.96143 0.91267 1.22105 0.92720 1.02557 1.03567 1.21643 1.00347 0.94203 1.01794 1.21712 0.81322 0.94007 0.95326 1.86545 1.19373 1.82171 1.49024 1.22364 1.02485 1.00162 0.93562 1.22227 1.02209 0.96042 0.98830 1.22866 0.98712 0.93514 0.87693 1.87954 1.74694 1.54749 1.14521 1.23467 1.00145 0.93808 0.87172 0.91273 0.93342 0.94505 0.95501 0.94156 0.91234 1.00092 0.99873 0.93195 0.93284 0.96762 0.83478 0.92505 0.95839 0.90237 0.91443 0.92065 0.94117 0.92113 0.91913 0.76981 0.89433 0.90308 0.88589 0.91108 0.87453 0.92208 0.90935 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 7.89 71.98 0.57 -3.78 16 2 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 3 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -28.73 7.65 25.60 0.20 -28.53 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 8 N -0.94 -58.46 13.29 21.45 0.28 -58.17 16 9 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 13 C 0.08 2.97 4.65 86.31 0.40 3.37 16 14 N -0.67 -18.85 4.92 -513.86 -2.53 -21.38 16 15 C 0.07 1.83 4.16 86.30 0.36 2.19 16 16 C -0.04 -0.71 0.23 -52.18 -0.01 -0.72 16 17 C -0.15 -2.27 7.44 71.98 0.54 -1.74 16 18 C -0.12 -2.51 7.83 71.98 0.56 -1.95 16 19 C 0.12 2.00 0.25 -10.71 0.00 1.99 16 20 O -0.56 -11.69 11.64 -141.80 -1.65 -13.34 16 21 C -0.15 -1.80 4.31 30.71 0.13 -1.66 16 22 C -0.16 -1.47 5.82 30.69 0.18 -1.29 16 23 C 0.05 0.54 6.84 72.01 0.49 1.03 16 24 O -0.40 -7.20 10.33 -141.80 -1.46 -8.66 16 25 C 0.03 0.55 5.09 72.01 0.37 0.91 16 26 H 0.07 1.97 6.57 -2.38 -0.02 1.96 16 27 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 1.65 6.62 -2.39 -0.02 1.63 16 31 H 0.07 2.31 7.60 -2.39 -0.02 2.29 16 32 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.34 8.63 4.81 -89.70 -0.43 8.20 16 38 H 0.06 1.71 7.68 -2.38 -0.02 1.69 16 39 H 0.02 0.59 6.50 -2.39 -0.02 0.58 16 40 H 0.08 0.90 6.37 -2.39 -0.02 0.88 16 41 H 0.07 1.07 6.57 -2.38 -0.02 1.06 16 42 H 0.06 0.86 6.37 -2.39 -0.02 0.84 16 43 H 0.04 0.99 7.69 -2.38 -0.02 0.97 16 44 H 0.06 1.37 7.60 -2.39 -0.02 1.35 16 45 H 0.06 1.03 6.51 -2.39 -0.02 1.02 16 46 H 0.38 6.24 7.07 -74.06 -0.52 5.72 16 47 H 0.09 0.87 6.29 -2.39 -0.01 0.86 16 48 H 0.08 1.02 6.62 -2.39 -0.02 1.00 16 49 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.07 0.71 6.95 -2.39 -0.02 0.69 16 51 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 53 H 0.07 1.10 6.30 -2.39 -0.02 1.08 16 54 H 0.09 1.80 6.58 -2.38 -0.02 1.79 16 Total: -1.00 -66.98 385.94 1.50 -65.47 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.07 Total: 22.72 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 4.91 Total: -33.61 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -2.25 Total: -79.56 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -3.12 Total: -22.01 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.98 1.50 -65.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594997056.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.657 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds