Wall clock time and date at job start Tue Mar 31 2020 11:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.50933 * 2 1 4 4 C 1.53101 * 109.50604 * 239.91253 * 2 1 3 5 5 N 1.47011 * 109.25738 * 183.21641 * 4 2 1 6 6 C 1.46901 * 111.00387 * 182.39083 * 5 4 2 7 7 C 1.53003 * 109.46635 * 66.04457 * 6 5 4 8 8 N 1.46507 * 109.46968 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99876 * 180.02562 * 8 7 6 10 10 O 1.21583 * 120.00144 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72218 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15 22 22 H 1.48502 * 109.47342 * 239.99982 * 19 17 15 23 23 C 1.47013 * 110.75260 * 58.61582 * 5 4 2 24 24 H 1.09001 * 109.51075 * 61.32070 * 23 5 4 25 25 C 1.53002 * 109.50658 * 181.44715 * 23 5 4 26 26 C 1.53094 * 109.26161 * 301.38202 * 23 5 4 27 27 O 1.43016 * 109.25601 * 56.84842 * 26 23 5 28 28 H 1.08998 * 109.47308 * 180.08517 * 1 2 3 29 29 H 1.08999 * 109.47160 * 300.08654 * 1 2 3 30 30 H 1.09005 * 109.47074 * 60.09071 * 1 2 3 31 31 H 1.08999 * 109.50876 * 63.28336 * 4 2 1 32 32 H 1.09001 * 109.54198 * 303.17279 * 4 2 1 33 33 H 1.08998 * 109.46776 * 306.05187 * 6 5 4 34 34 H 1.08994 * 109.47731 * 186.04524 * 6 5 4 35 35 H 1.08998 * 109.46943 * 60.00832 * 7 6 5 36 36 H 1.08994 * 109.47547 * 300.00126 * 7 6 5 37 37 H 0.97000 * 119.99601 * 359.97438 * 8 7 6 38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 39 39 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 40 40 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 41 41 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 42 42 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 43 43 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 44 44 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 45 45 H 0.97000 * 120.00572 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.46977 * 60.00393 * 25 23 5 47 47 H 1.09002 * 109.47287 * 179.97438 * 25 23 5 48 48 H 1.08997 * 109.47491 * 300.00005 * 25 23 5 49 49 H 1.08997 * 109.50694 * 296.91912 * 26 23 5 50 50 H 1.08992 * 109.51122 * 176.78312 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2487 5 7 3.5092 -0.7880 -1.2048 6 6 4.0446 -1.4260 -2.4148 7 6 3.7553 -0.5407 -3.6287 8 7 4.2888 -1.1772 -4.8356 9 6 4.1502 -0.5740 -6.0329 10 8 3.5822 0.4981 -6.1114 11 7 4.6414 -1.1594 -7.1431 12 6 4.4855 -0.5067 -8.4453 13 6 5.1208 -1.3772 -9.5315 14 6 4.9574 -0.6959 -10.8916 15 6 5.5837 -1.5530 -11.9612 16 1 6.0511 -2.4902 -11.6974 17 6 5.5600 -1.1408 -13.2767 18 7 4.9912 0.0006 -13.5980 19 14 6.3356 -2.2036 -14.6027 20 1 6.9041 -3.4288 -13.9855 21 1 5.3022 -2.5854 -15.5985 22 1 7.4166 -1.4418 -15.2783 23 6 3.9638 -1.4884 0.0052 24 1 3.5866 -2.5110 -0.0027 25 6 5.4933 -1.5076 0.0401 26 6 3.4334 -0.7573 1.2413 27 8 2.0075 -0.6767 1.1659 28 1 -0.3634 -1.0276 0.0015 29 1 -0.3633 0.5152 0.8892 30 1 -0.3633 0.5124 -0.8908 31 1 1.7273 -0.1787 -2.1391 32 1 1.6331 -1.7338 -1.2774 33 1 3.5710 -2.3980 -2.5529 34 1 5.1214 -1.5581 -2.3099 35 1 4.2289 0.4313 -3.4905 36 1 2.6785 -0.4085 -3.7337 37 1 4.7423 -2.0323 -4.7728 38 1 5.0943 -2.0149 -7.0805 39 1 3.4252 -0.3736 -8.6605 40 1 4.9772 0.4659 -8.4256 41 1 6.1810 -1.5104 -9.3163 42 1 4.6291 -2.3499 -9.5514 43 1 3.8971 -0.5631 -11.1064 44 1 5.4488 0.2769 -10.8720 45 1 4.9748 0.2909 -14.5234 46 1 5.8694 -0.4846 0.0500 47 1 5.8298 -2.0266 0.9377 48 1 5.8705 -2.0248 -0.8420 49 1 3.8533 0.2479 1.2778 50 1 3.7200 -1.3050 2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596265203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:35 Heat of formation + Delta-G solvation = -87.262580 kcal Electronic energy + Delta-G solvation = -25716.021248 eV Core-core repulsion = 21970.757422 eV Total energy + Delta-G solvation = -3745.263827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.46004 -39.72539 -37.02105 -35.53858 -34.63730 -33.79032 -33.27428 -31.44986 -30.81299 -28.98101 -26.91094 -26.16863 -25.59715 -23.20679 -22.34531 -21.96221 -20.88998 -20.57950 -20.28803 -18.05916 -17.18629 -16.74960 -16.46751 -16.19300 -15.82282 -15.66841 -15.33768 -14.93996 -14.64526 -14.54390 -14.36572 -13.91945 -13.85323 -13.65115 -13.31563 -13.07672 -12.64918 -12.37925 -12.29462 -12.23207 -12.21754 -11.93968 -11.79703 -11.65756 -11.48223 -11.17884 -10.91905 -10.90116 -10.72235 -10.56686 -10.13497 -9.97200 -9.85828 -9.44442 -9.20653 -9.10881 -8.89474 -8.59773 -8.37366 -6.01727 -4.04770 2.64331 3.29745 3.29802 3.37095 3.37535 3.39147 3.41023 4.20317 4.31222 4.38055 4.41244 4.46817 4.60425 4.67464 4.73778 4.77106 4.84314 4.99129 5.09497 5.14518 5.19665 5.23701 5.26597 5.34065 5.38061 5.42998 5.57279 5.61662 5.66262 5.71320 5.75723 5.77340 5.82347 6.18978 6.33790 6.46191 6.51902 6.53454 6.63021 6.76241 6.80484 7.02785 7.06491 7.64461 7.77162 7.97337 8.14426 8.38222 8.75298 9.02176 9.59379 11.09573 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.001692 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.426991 B =16541.104648 C =17089.445224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.089 3.911 3 H 0.069 0.931 4 C 0.018 3.982 5 N -0.528 5.528 6 C 0.040 3.960 7 C 0.144 3.856 8 N -0.752 5.752 9 C 0.701 3.299 10 O -0.592 6.592 11 N -0.742 5.742 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.045 3.955 24 H 0.050 0.950 25 C -0.148 4.148 26 C 0.070 3.930 27 O -0.384 6.384 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.020 0.980 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 -4.462 32.419 32.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.087 0.913 4 C -0.110 4.110 5 N -0.254 5.254 6 C -0.088 4.088 7 C 0.019 3.981 8 N -0.410 5.410 9 C 0.401 3.599 10 O -0.469 6.469 11 N -0.396 5.396 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.064 4.064 24 H 0.068 0.932 25 C -0.206 4.206 26 C -0.007 4.007 27 O -0.303 6.303 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.226 0.774 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.696 -2.917 32.336 32.677 hybrid contribution 0.751 -2.132 -1.069 2.501 sum -2.944 -5.049 31.267 31.809 Atomic orbital electron populations 1.21760 0.92604 1.03036 1.02939 1.22180 0.94977 0.95726 0.84001 0.91290 1.22955 0.87438 1.00593 0.99966 1.62096 1.09050 1.52756 1.01481 1.22348 1.01419 0.95713 0.89335 1.21024 0.99213 0.96365 0.81543 1.44999 1.64368 1.25477 1.06115 1.15965 0.79797 0.83903 0.80276 1.90925 1.48425 1.21915 1.85682 1.45383 1.62054 1.25302 1.06851 1.21515 1.01214 0.96561 0.79541 1.21889 0.99284 0.98554 0.96090 1.19039 0.97586 0.95972 0.88869 1.21243 1.36845 1.05894 0.92016 0.92607 1.25036 0.95510 0.95165 0.98819 1.69975 1.44223 1.20801 1.18227 0.86527 0.79047 0.80488 0.81852 1.19792 1.21015 1.21001 1.22325 0.96648 0.96471 0.90918 0.93160 1.21867 0.93302 1.03154 1.02261 1.22687 0.80938 1.00361 0.96685 1.87992 1.20923 1.78392 1.42957 0.91876 0.91467 0.90626 0.88892 0.93727 0.94066 0.89289 0.90754 0.91812 0.77363 0.77349 0.91972 0.91926 0.92764 0.92798 0.96222 0.96207 0.92982 0.91293 0.91721 0.91883 0.92099 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.57 37.15 0.36 -0.55 16 2 C 0.09 0.68 3.43 -26.68 -0.09 0.59 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C 0.02 0.14 4.72 -3.71 -0.02 0.12 16 5 N -0.53 -4.01 4.54 -226.34 -1.03 -5.04 16 6 C 0.04 0.29 4.85 -3.82 -0.02 0.27 16 7 C 0.14 1.42 5.60 -4.04 -0.02 1.40 16 8 N -0.75 -8.01 5.56 -65.22 -0.36 -8.38 16 9 C 0.70 10.77 8.57 -86.92 -0.74 10.02 16 10 O -0.59 -11.78 16.34 5.29 0.09 -11.69 16 11 N -0.74 -10.76 5.56 -65.22 -0.36 -11.13 16 12 C 0.13 2.42 5.67 -4.04 -0.02 2.40 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.04 0.29 2.59 -67.60 -0.17 0.12 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 C -0.15 -0.75 8.92 37.16 0.33 -0.42 16 26 C 0.07 0.47 6.29 37.21 0.23 0.70 16 27 O -0.38 -3.35 10.47 -35.23 -0.37 -3.72 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.72 6.37 -51.93 -0.33 0.39 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.04 0.29 8.12 -51.93 -0.42 -0.14 16 34 H 0.09 0.56 5.77 -51.93 -0.30 0.26 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.70 6.51 -51.93 -0.34 0.36 16 37 H 0.39 2.95 8.49 -40.82 -0.35 2.60 16 38 H 0.39 4.47 8.49 -40.82 -0.35 4.13 16 39 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.06 0.31 6.17 -51.93 -0.32 -0.01 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -33.99 396.01 -10.35 -44.33 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -9.13 Total: 0.09 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.86 Total: -0.79 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -1.02 Total: -50.65 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.28 Total: -15.41 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.99 -10.35 -44.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596265203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.930 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds