Wall clock time and date at job start Tue Mar 31 2020 11:11:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09003 * 109.50933 * 2 1
4 4 C 1.53101 * 109.50604 * 239.91253 * 2 1 3
5 5 N 1.47011 * 109.25738 * 183.21641 * 4 2 1
6 6 C 1.46901 * 111.00387 * 182.39083 * 5 4 2
7 7 C 1.53003 * 109.46635 * 66.04457 * 6 5 4
8 8 N 1.46507 * 109.46968 * 180.02562 * 7 6 5
9 9 C 1.34775 * 119.99876 * 180.02562 * 8 7 6
10 10 O 1.21583 * 120.00144 * 359.97438 * 9 8 7
11 11 N 1.34777 * 119.99585 * 179.97438 * 9 8 7
12 12 C 1.46499 * 119.99665 * 179.72218 * 11 9 8
13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9
14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11
15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12
16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13
17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13
18 18 N 1.31512 * 120.00116 * 0.02562 * 17 15 14
19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14
20 20 H 1.48505 * 109.47135 * 0.02562 * 19 17 15
21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15
22 22 H 1.48502 * 109.47342 * 239.99982 * 19 17 15
23 23 C 1.47013 * 110.75260 * 58.61582 * 5 4 2
24 24 H 1.09001 * 109.51075 * 61.32070 * 23 5 4
25 25 C 1.53002 * 109.50658 * 181.44715 * 23 5 4
26 26 C 1.53094 * 109.26161 * 301.38202 * 23 5 4
27 27 O 1.43016 * 109.25601 * 56.84842 * 26 23 5
28 28 H 1.08998 * 109.47308 * 180.08517 * 1 2 3
29 29 H 1.08999 * 109.47160 * 300.08654 * 1 2 3
30 30 H 1.09005 * 109.47074 * 60.09071 * 1 2 3
31 31 H 1.08999 * 109.50876 * 63.28336 * 4 2 1
32 32 H 1.09001 * 109.54198 * 303.17279 * 4 2 1
33 33 H 1.08998 * 109.46776 * 306.05187 * 6 5 4
34 34 H 1.08994 * 109.47731 * 186.04524 * 6 5 4
35 35 H 1.08998 * 109.46943 * 60.00832 * 7 6 5
36 36 H 1.08994 * 109.47547 * 300.00126 * 7 6 5
37 37 H 0.97000 * 119.99601 * 359.97438 * 8 7 6
38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 8
39 39 H 1.09009 * 109.47454 * 300.27637 * 12 11 9
40 40 H 1.08998 * 109.47492 * 60.27932 * 12 11 9
41 41 H 1.08995 * 109.46638 * 300.00121 * 13 12 11
42 42 H 1.09006 * 109.47139 * 60.00254 * 13 12 11
43 43 H 1.08995 * 109.47672 * 299.99669 * 14 13 12
44 44 H 1.09007 * 109.47288 * 60.00489 * 14 13 12
45 45 H 0.97000 * 120.00572 * 179.97438 * 18 17 15
46 46 H 1.08999 * 109.46977 * 60.00393 * 25 23 5
47 47 H 1.09002 * 109.47287 * 179.97438 * 25 23 5
48 48 H 1.08997 * 109.47491 * 300.00005 * 25 23 5
49 49 H 1.08997 * 109.50694 * 296.91912 * 26 23 5
50 50 H 1.08992 * 109.51122 * 176.78312 * 26 23 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8940 1.0274 0.0000
4 6 2.0412 -0.7235 -1.2487
5 7 3.5092 -0.7880 -1.2048
6 6 4.0446 -1.4260 -2.4148
7 6 3.7553 -0.5407 -3.6287
8 7 4.2888 -1.1772 -4.8356
9 6 4.1502 -0.5740 -6.0329
10 8 3.5822 0.4981 -6.1114
11 7 4.6414 -1.1594 -7.1431
12 6 4.4855 -0.5067 -8.4453
13 6 5.1208 -1.3772 -9.5315
14 6 4.9574 -0.6959 -10.8916
15 6 5.5837 -1.5530 -11.9612
16 1 6.0511 -2.4902 -11.6974
17 6 5.5600 -1.1408 -13.2767
18 7 4.9912 0.0006 -13.5980
19 14 6.3356 -2.2036 -14.6027
20 1 6.9041 -3.4288 -13.9855
21 1 5.3022 -2.5854 -15.5985
22 1 7.4166 -1.4418 -15.2783
23 6 3.9638 -1.4884 0.0052
24 1 3.5866 -2.5110 -0.0027
25 6 5.4933 -1.5076 0.0401
26 6 3.4334 -0.7573 1.2413
27 8 2.0075 -0.6767 1.1659
28 1 -0.3634 -1.0276 0.0015
29 1 -0.3633 0.5152 0.8892
30 1 -0.3633 0.5124 -0.8908
31 1 1.7273 -0.1787 -2.1391
32 1 1.6331 -1.7338 -1.2774
33 1 3.5710 -2.3980 -2.5529
34 1 5.1214 -1.5581 -2.3099
35 1 4.2289 0.4313 -3.4905
36 1 2.6785 -0.4085 -3.7337
37 1 4.7423 -2.0323 -4.7728
38 1 5.0943 -2.0149 -7.0805
39 1 3.4252 -0.3736 -8.6605
40 1 4.9772 0.4659 -8.4256
41 1 6.1810 -1.5104 -9.3163
42 1 4.6291 -2.3499 -9.5514
43 1 3.8971 -0.5631 -11.1064
44 1 5.4488 0.2769 -10.8720
45 1 4.9748 0.2909 -14.5234
46 1 5.8694 -0.4846 0.0500
47 1 5.8298 -2.0266 0.9377
48 1 5.8705 -2.0248 -0.8420
49 1 3.8533 0.2479 1.2778
50 1 3.7200 -1.3050 2.1390
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000596265203.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:35
Heat of formation + Delta-G solvation = -112.994308 kcal
Electronic energy + Delta-G solvation = -25717.137060 eV
Core-core repulsion = 21970.757422 eV
Total energy + Delta-G solvation = -3746.379638 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 313.215 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.20597 -40.78043 -37.76316 -36.95808 -35.65202 -35.17854 -34.37318 -33.02897
-31.63931 -29.78879 -28.39123 -26.99791 -26.24795 -24.88208 -23.12320 -22.61493
-22.29708 -21.88012 -21.06831 -19.25225 -18.53315 -17.80929 -17.42906 -17.11912
-16.83967 -16.56724 -16.47239 -16.10560 -15.74325 -15.65816 -15.39914 -15.06716
-14.91102 -14.46964 -14.24688 -13.94054 -13.71874 -13.66680 -13.48118 -13.15989
-12.89019 -12.80293 -12.76903 -12.71806 -12.53668 -12.44071 -12.32707 -12.01489
-11.81261 -11.67949 -11.65973 -11.45928 -11.31065 -11.13618 -10.55929 -10.55372
-10.40366 -9.77629 -9.47265 -8.18751 -6.30163 1.42315 1.42449 1.55484
1.61405 2.13166 2.42346 2.66652 2.80862 3.15064 3.40044 3.64625
3.78519 3.82240 4.00607 4.10253 4.15589 4.17445 4.20432 4.24773
4.31523 4.40284 4.55625 4.57507 4.64971 4.68736 4.71309 4.78093
4.86537 4.87340 4.91423 4.97303 4.99456 5.03661 5.08531 5.18349
5.23451 5.31491 5.43024 5.47875 5.55374 5.72432 5.85462 5.88377
5.91336 6.00581 6.20513 6.23540 6.87499 7.10790 7.39397 7.56999
8.93560
Molecular weight = 313.22amu
Principal moments of inertia in cm(-1)
A = 0.033348 B = 0.001692 C = 0.001638
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 839.426991 B =16541.104648 C =17089.445224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.087 3.913
3 H 0.063 0.937
4 C 0.021 3.979
5 N -0.538 5.538
6 C 0.051 3.949
7 C 0.147 3.853
8 N -0.730 5.730
9 C 0.698 3.302
10 O -0.641 6.641
11 N -0.729 5.729
12 C 0.149 3.851
13 C -0.100 4.100
14 C 0.022 3.978
15 C -0.539 4.539
16 H 0.067 0.933
17 C -0.005 4.005
18 N -0.935 5.935
19 Si 0.968 3.032
20 H -0.258 1.258
21 H -0.281 1.281
22 H -0.280 1.280
23 C 0.047 3.953
24 H 0.048 0.952
25 C -0.144 4.144
26 C 0.066 3.934
27 O -0.401 6.401
28 H 0.061 0.939
29 H 0.068 0.932
30 H 0.083 0.917
31 H 0.088 0.912
32 H 0.042 0.958
33 H 0.051 0.949
34 H 0.104 0.896
35 H 0.057 0.943
36 H 0.052 0.948
37 H 0.413 0.587
38 H 0.413 0.587
39 H 0.046 0.954
40 H 0.046 0.954
41 H 0.069 0.931
42 H 0.068 0.932
43 H -0.008 1.008
44 H -0.008 1.008
45 H 0.263 0.737
46 H 0.062 0.938
47 H 0.079 0.921
48 H 0.067 0.933
49 H 0.059 0.941
50 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.874 -6.837 33.473 34.215
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.029 3.971
3 H 0.081 0.919
4 C -0.107 4.107
5 N -0.264 5.264
6 C -0.077 4.077
7 C 0.022 3.978
8 N -0.387 5.387
9 C 0.397 3.603
10 O -0.522 6.522
11 N -0.385 5.385
12 C 0.025 3.975
13 C -0.138 4.138
14 C -0.016 4.016
15 C -0.577 4.577
16 H 0.086 0.914
17 C -0.203 4.203
18 N -0.576 5.576
19 Si 0.793 3.207
20 H -0.181 1.181
21 H -0.206 1.206
22 H -0.206 1.206
23 C -0.062 4.062
24 H 0.066 0.934
25 C -0.202 4.202
26 C -0.011 4.011
27 O -0.320 6.320
28 H 0.080 0.920
29 H 0.087 0.913
30 H 0.102 0.898
31 H 0.106 0.894
32 H 0.060 0.940
33 H 0.069 0.931
34 H 0.122 0.878
35 H 0.076 0.924
36 H 0.070 0.930
37 H 0.250 0.750
38 H 0.249 0.751
39 H 0.064 0.936
40 H 0.064 0.936
41 H 0.087 0.913
42 H 0.087 0.913
43 H 0.011 0.989
44 H 0.011 0.989
45 H 0.072 0.928
46 H 0.081 0.919
47 H 0.098 0.902
48 H 0.086 0.914
49 H 0.077 0.923
50 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -2.364 -5.363 33.442 33.952
hybrid contribution 0.328 -1.355 -1.328 1.926
sum -2.035 -6.717 32.114 32.872
Atomic orbital electron populations
1.21758 0.91763 1.03082 1.03460 1.22227 0.95727 0.95309 0.83799
0.91856 1.22904 0.87716 1.00303 0.99776 1.62092 1.08921 1.53342
1.02053 1.22242 1.02381 0.95135 0.87915 1.21018 0.98267 0.96355
0.82145 1.44761 1.63381 1.25819 1.04754 1.16130 0.79382 0.83424
0.81328 1.90899 1.50563 1.24268 1.86512 1.45003 1.62136 1.25857
1.05469 1.21076 0.99794 0.95827 0.80836 1.21585 1.00528 0.98527
0.93139 1.18961 0.95305 0.95186 0.92136 1.21716 1.36705 1.06462
0.92849 0.91449 1.26039 0.96043 0.96509 1.01662 1.70120 1.45718
1.22805 1.18908 0.85354 0.78008 0.78928 0.78451 1.18149 1.20647
1.20620 1.22358 0.97636 0.95996 0.90174 0.93444 1.21848 0.91965
1.03083 1.03253 1.22852 0.80013 1.00634 0.97580 1.87970 1.22152
1.78516 1.43361 0.92016 0.91276 0.89797 0.89414 0.94003 0.93126
0.87793 0.92450 0.92971 0.75017 0.75074 0.93593 0.93555 0.91263
0.91307 0.98937 0.98925 0.92845 0.91854 0.90216 0.91449 0.92298
0.86714
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.73 9.57 71.98 0.69 -1.04 16
2 C 0.09 1.30 3.43 30.63 0.10 1.41 16
3 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
4 C 0.02 0.31 4.72 86.32 0.41 0.72 16
5 N -0.54 -7.55 4.54 -870.01 -3.95 -11.50 16
6 C 0.05 0.64 4.85 86.30 0.42 1.06 16
7 C 0.15 2.77 5.60 86.38 0.48 3.25 16
8 N -0.73 -14.27 5.56 -478.53 -2.66 -16.93 16
9 C 0.70 20.84 8.57 179.05 1.53 22.37 16
10 O -0.64 -25.85 16.34 -3.98 -0.06 -25.91 16
11 N -0.73 -20.08 5.56 -478.53 -2.66 -22.74 16
12 C 0.15 5.35 5.67 86.38 0.49 5.84 16
13 C -0.10 -3.82 5.27 30.59 0.16 -3.65 16
14 C 0.02 1.14 4.97 29.85 0.15 1.29 16
15 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16
16 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16
17 C -0.01 -0.29 5.46 84.65 0.46 0.18 16
18 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16
19 Si 0.97 43.72 29.54 68.60 2.03 45.75 16
20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16
21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16
22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16
23 C 0.05 0.53 2.59 44.93 0.12 0.65 16
24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16
25 C -0.14 -1.13 8.92 71.98 0.64 -0.49 16
26 C 0.07 0.80 6.29 72.01 0.45 1.25 16
27 O -0.40 -6.72 10.47 -148.98 -1.56 -8.28 16
28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
29 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16
30 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16
31 H 0.09 1.37 6.37 -2.39 -0.02 1.36 16
32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16
33 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16
34 H 0.10 1.01 5.77 -2.39 -0.01 1.00 16
35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
36 H 0.05 1.13 6.51 -2.39 -0.02 1.12 16
37 H 0.41 4.95 8.49 -92.71 -0.79 4.17 16
38 H 0.41 8.21 8.49 -92.71 -0.79 7.42 16
39 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16
40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16
42 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16
43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16
44 H -0.01 -0.44 8.14 -2.38 -0.02 -0.45 16
45 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16
46 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
47 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16
48 H 0.07 0.48 6.17 -2.39 -0.01 0.46 16
49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
50 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16
Total: -1.00 -74.52 396.01 -2.90 -77.41
By element:
Atomic # 1 Polarization: 16.76 SS G_CDS: -0.65 Total: 16.11 kcal
Atomic # 6 Polarization: -3.30 SS G_CDS: 6.34 Total: 3.04 kcal
Atomic # 7 Polarization: -99.13 SS G_CDS: -8.99 Total: -108.11 kcal
Atomic # 8 Polarization: -32.57 SS G_CDS: -1.62 Total: -34.19 kcal
Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal
Total: -74.52 -2.90 -77.41 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596265203.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.583 kcal
(2) G-P(sol) polarization free energy of solvation -74.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.895 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.411 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.994 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds