Wall clock time and date at job start Tue Mar 31 2020 11:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.50933 * 2 1 4 4 C 1.53101 * 109.50604 * 239.91253 * 2 1 3 5 5 N 1.47011 * 109.25738 * 183.21641 * 4 2 1 6 6 C 1.46901 * 111.00387 * 182.39083 * 5 4 2 7 7 C 1.53003 * 109.46635 * 66.04457 * 6 5 4 8 8 N 1.46507 * 109.46968 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99876 * 180.02562 * 8 7 6 10 10 O 1.21583 * 120.00144 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72218 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15 22 22 H 1.48502 * 109.47342 * 239.99982 * 19 17 15 23 23 C 1.47013 * 110.75260 * 58.61582 * 5 4 2 24 24 H 1.09001 * 109.51075 * 61.32070 * 23 5 4 25 25 C 1.53002 * 109.50658 * 181.44715 * 23 5 4 26 26 C 1.53094 * 109.26161 * 301.38202 * 23 5 4 27 27 O 1.43016 * 109.25601 * 56.84842 * 26 23 5 28 28 H 1.08998 * 109.47308 * 180.08517 * 1 2 3 29 29 H 1.08999 * 109.47160 * 300.08654 * 1 2 3 30 30 H 1.09005 * 109.47074 * 60.09071 * 1 2 3 31 31 H 1.08999 * 109.50876 * 63.28336 * 4 2 1 32 32 H 1.09001 * 109.54198 * 303.17279 * 4 2 1 33 33 H 1.08998 * 109.46776 * 306.05187 * 6 5 4 34 34 H 1.08994 * 109.47731 * 186.04524 * 6 5 4 35 35 H 1.08998 * 109.46943 * 60.00832 * 7 6 5 36 36 H 1.08994 * 109.47547 * 300.00126 * 7 6 5 37 37 H 0.97000 * 119.99601 * 359.97438 * 8 7 6 38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 39 39 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 40 40 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 41 41 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 42 42 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 43 43 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 44 44 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 45 45 H 0.97000 * 120.00572 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.46977 * 60.00393 * 25 23 5 47 47 H 1.09002 * 109.47287 * 179.97438 * 25 23 5 48 48 H 1.08997 * 109.47491 * 300.00005 * 25 23 5 49 49 H 1.08997 * 109.50694 * 296.91912 * 26 23 5 50 50 H 1.08992 * 109.51122 * 176.78312 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2487 5 7 3.5092 -0.7880 -1.2048 6 6 4.0446 -1.4260 -2.4148 7 6 3.7553 -0.5407 -3.6287 8 7 4.2888 -1.1772 -4.8356 9 6 4.1502 -0.5740 -6.0329 10 8 3.5822 0.4981 -6.1114 11 7 4.6414 -1.1594 -7.1431 12 6 4.4855 -0.5067 -8.4453 13 6 5.1208 -1.3772 -9.5315 14 6 4.9574 -0.6959 -10.8916 15 6 5.5837 -1.5530 -11.9612 16 1 6.0511 -2.4902 -11.6974 17 6 5.5600 -1.1408 -13.2767 18 7 4.9912 0.0006 -13.5980 19 14 6.3356 -2.2036 -14.6027 20 1 6.9041 -3.4288 -13.9855 21 1 5.3022 -2.5854 -15.5985 22 1 7.4166 -1.4418 -15.2783 23 6 3.9638 -1.4884 0.0052 24 1 3.5866 -2.5110 -0.0027 25 6 5.4933 -1.5076 0.0401 26 6 3.4334 -0.7573 1.2413 27 8 2.0075 -0.6767 1.1659 28 1 -0.3634 -1.0276 0.0015 29 1 -0.3633 0.5152 0.8892 30 1 -0.3633 0.5124 -0.8908 31 1 1.7273 -0.1787 -2.1391 32 1 1.6331 -1.7338 -1.2774 33 1 3.5710 -2.3980 -2.5529 34 1 5.1214 -1.5581 -2.3099 35 1 4.2289 0.4313 -3.4905 36 1 2.6785 -0.4085 -3.7337 37 1 4.7423 -2.0323 -4.7728 38 1 5.0943 -2.0149 -7.0805 39 1 3.4252 -0.3736 -8.6605 40 1 4.9772 0.4659 -8.4256 41 1 6.1810 -1.5104 -9.3163 42 1 4.6291 -2.3499 -9.5514 43 1 3.8971 -0.5631 -11.1064 44 1 5.4488 0.2769 -10.8720 45 1 4.9748 0.2909 -14.5234 46 1 5.8694 -0.4846 0.0500 47 1 5.8298 -2.0266 0.9377 48 1 5.8705 -2.0248 -0.8420 49 1 3.8533 0.2479 1.2778 50 1 3.7200 -1.3050 2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596265203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:35 Heat of formation + Delta-G solvation = -112.994308 kcal Electronic energy + Delta-G solvation = -25717.137060 eV Core-core repulsion = 21970.757422 eV Total energy + Delta-G solvation = -3746.379638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.20597 -40.78043 -37.76316 -36.95808 -35.65202 -35.17854 -34.37318 -33.02897 -31.63931 -29.78879 -28.39123 -26.99791 -26.24795 -24.88208 -23.12320 -22.61493 -22.29708 -21.88012 -21.06831 -19.25225 -18.53315 -17.80929 -17.42906 -17.11912 -16.83967 -16.56724 -16.47239 -16.10560 -15.74325 -15.65816 -15.39914 -15.06716 -14.91102 -14.46964 -14.24688 -13.94054 -13.71874 -13.66680 -13.48118 -13.15989 -12.89019 -12.80293 -12.76903 -12.71806 -12.53668 -12.44071 -12.32707 -12.01489 -11.81261 -11.67949 -11.65973 -11.45928 -11.31065 -11.13618 -10.55929 -10.55372 -10.40366 -9.77629 -9.47265 -8.18751 -6.30163 1.42315 1.42449 1.55484 1.61405 2.13166 2.42346 2.66652 2.80862 3.15064 3.40044 3.64625 3.78519 3.82240 4.00607 4.10253 4.15589 4.17445 4.20432 4.24773 4.31523 4.40284 4.55625 4.57507 4.64971 4.68736 4.71309 4.78093 4.86537 4.87340 4.91423 4.97303 4.99456 5.03661 5.08531 5.18349 5.23451 5.31491 5.43024 5.47875 5.55374 5.72432 5.85462 5.88377 5.91336 6.00581 6.20513 6.23540 6.87499 7.10790 7.39397 7.56999 8.93560 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.001692 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.426991 B =16541.104648 C =17089.445224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.063 0.937 4 C 0.021 3.979 5 N -0.538 5.538 6 C 0.051 3.949 7 C 0.147 3.853 8 N -0.730 5.730 9 C 0.698 3.302 10 O -0.641 6.641 11 N -0.729 5.729 12 C 0.149 3.851 13 C -0.100 4.100 14 C 0.022 3.978 15 C -0.539 4.539 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.258 1.258 21 H -0.281 1.281 22 H -0.280 1.280 23 C 0.047 3.953 24 H 0.048 0.952 25 C -0.144 4.144 26 C 0.066 3.934 27 O -0.401 6.401 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.413 0.587 38 H 0.413 0.587 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.068 0.932 43 H -0.008 1.008 44 H -0.008 1.008 45 H 0.263 0.737 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 -6.837 33.473 34.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.081 0.919 4 C -0.107 4.107 5 N -0.264 5.264 6 C -0.077 4.077 7 C 0.022 3.978 8 N -0.387 5.387 9 C 0.397 3.603 10 O -0.522 6.522 11 N -0.385 5.385 12 C 0.025 3.975 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.062 4.062 24 H 0.066 0.934 25 C -0.202 4.202 26 C -0.011 4.011 27 O -0.320 6.320 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.250 0.750 38 H 0.249 0.751 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.364 -5.363 33.442 33.952 hybrid contribution 0.328 -1.355 -1.328 1.926 sum -2.035 -6.717 32.114 32.872 Atomic orbital electron populations 1.21758 0.91763 1.03082 1.03460 1.22227 0.95727 0.95309 0.83799 0.91856 1.22904 0.87716 1.00303 0.99776 1.62092 1.08921 1.53342 1.02053 1.22242 1.02381 0.95135 0.87915 1.21018 0.98267 0.96355 0.82145 1.44761 1.63381 1.25819 1.04754 1.16130 0.79382 0.83424 0.81328 1.90899 1.50563 1.24268 1.86512 1.45003 1.62136 1.25857 1.05469 1.21076 0.99794 0.95827 0.80836 1.21585 1.00528 0.98527 0.93139 1.18961 0.95305 0.95186 0.92136 1.21716 1.36705 1.06462 0.92849 0.91449 1.26039 0.96043 0.96509 1.01662 1.70120 1.45718 1.22805 1.18908 0.85354 0.78008 0.78928 0.78451 1.18149 1.20647 1.20620 1.22358 0.97636 0.95996 0.90174 0.93444 1.21848 0.91965 1.03083 1.03253 1.22852 0.80013 1.00634 0.97580 1.87970 1.22152 1.78516 1.43361 0.92016 0.91276 0.89797 0.89414 0.94003 0.93126 0.87793 0.92450 0.92971 0.75017 0.75074 0.93593 0.93555 0.91263 0.91307 0.98937 0.98925 0.92845 0.91854 0.90216 0.91449 0.92298 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.57 71.98 0.69 -1.04 16 2 C 0.09 1.30 3.43 30.63 0.10 1.41 16 3 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 4 C 0.02 0.31 4.72 86.32 0.41 0.72 16 5 N -0.54 -7.55 4.54 -870.01 -3.95 -11.50 16 6 C 0.05 0.64 4.85 86.30 0.42 1.06 16 7 C 0.15 2.77 5.60 86.38 0.48 3.25 16 8 N -0.73 -14.27 5.56 -478.53 -2.66 -16.93 16 9 C 0.70 20.84 8.57 179.05 1.53 22.37 16 10 O -0.64 -25.85 16.34 -3.98 -0.06 -25.91 16 11 N -0.73 -20.08 5.56 -478.53 -2.66 -22.74 16 12 C 0.15 5.35 5.67 86.38 0.49 5.84 16 13 C -0.10 -3.82 5.27 30.59 0.16 -3.65 16 14 C 0.02 1.14 4.97 29.85 0.15 1.29 16 15 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 16 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 18 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16 19 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 C 0.05 0.53 2.59 44.93 0.12 0.65 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 C -0.14 -1.13 8.92 71.98 0.64 -0.49 16 26 C 0.07 0.80 6.29 72.01 0.45 1.25 16 27 O -0.40 -6.72 10.47 -148.98 -1.56 -8.28 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.09 1.37 6.37 -2.39 -0.02 1.36 16 32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16 34 H 0.10 1.01 5.77 -2.39 -0.01 1.00 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.13 6.51 -2.39 -0.02 1.12 16 37 H 0.41 4.95 8.49 -92.71 -0.79 4.17 16 38 H 0.41 8.21 8.49 -92.71 -0.79 7.42 16 39 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H -0.01 -0.44 8.14 -2.38 -0.02 -0.45 16 45 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 46 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.07 0.48 6.17 -2.39 -0.01 0.46 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -74.52 396.01 -2.90 -77.41 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.65 Total: 16.11 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 6.34 Total: 3.04 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -8.99 Total: -108.11 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.62 Total: -34.19 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -74.52 -2.90 -77.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596265203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.583 kcal (2) G-P(sol) polarization free energy of solvation -74.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds