Wall clock time and date at job start Tue Mar 31 2020 11:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52995 * 109.46818 * 2 1 4 4 O 1.42894 * 109.47261 * 120.00427 * 2 1 3 5 5 C 1.42900 * 114.00142 * 150.00211 * 4 2 1 6 6 C 1.52997 * 109.47322 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47078 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46902 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99698 * 179.97438 * 8 7 6 10 10 O 1.21577 * 120.00491 * 354.92447 * 9 8 7 11 11 N 1.34779 * 119.99724 * 174.91875 * 9 8 7 12 12 C 1.47077 * 120.88116 * 184.71934 * 11 9 8 13 13 C 1.53694 * 108.28002 * 128.75922 * 12 11 9 14 14 N 1.46902 * 109.25585 * 54.07963 * 13 12 11 15 15 C 1.46906 * 110.99796 * 172.61479 * 14 13 12 16 16 C 1.50705 * 109.46502 * 294.30051 * 15 14 13 17 17 H 1.07994 * 120.00387 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99140 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00555 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99592 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47538 * 89.99609 * 20 18 16 22 22 H 1.48504 * 109.47004 * 210.00132 * 20 18 16 23 23 H 1.48507 * 109.47060 * 329.99535 * 20 18 16 24 24 C 1.46894 * 111.26942 * 296.76144 * 14 13 12 25 25 C 1.47079 * 120.88359 * 5.00108 * 11 9 8 26 26 H 1.09001 * 109.46724 * 299.99284 * 1 2 3 27 27 H 1.08992 * 109.46956 * 59.99664 * 1 2 3 28 28 H 1.09002 * 109.46667 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46724 * 240.00716 * 2 1 3 30 30 H 1.09002 * 109.47279 * 60.00451 * 3 2 1 31 31 H 1.08995 * 109.47487 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47428 * 300.00648 * 3 2 1 33 33 H 1.09001 * 109.46943 * 59.99467 * 5 4 2 34 34 H 1.08997 * 109.46436 * 299.99845 * 5 4 2 35 35 H 1.09001 * 109.47273 * 60.00004 * 6 5 4 36 36 H 1.09005 * 109.47083 * 299.99981 * 6 5 4 37 37 H 1.08992 * 109.47311 * 299.99807 * 7 6 5 38 38 H 1.08996 * 109.47284 * 60.00181 * 7 6 5 39 39 H 0.96995 * 119.99930 * 0.02562 * 8 7 6 40 40 H 1.09002 * 109.63307 * 248.52579 * 12 11 9 41 41 H 1.08998 * 109.62919 * 9.10886 * 12 11 9 42 42 H 1.09002 * 109.64637 * 294.08218 * 13 12 11 43 43 H 1.08993 * 109.42829 * 173.95100 * 13 12 11 44 44 H 1.08994 * 109.47151 * 54.29915 * 15 14 13 45 45 H 1.08999 * 109.46938 * 174.30879 * 15 14 13 46 46 H 0.97005 * 120.00001 * 180.02562 * 19 18 16 47 47 H 1.09007 * 109.49598 * 303.14255 * 24 14 13 48 48 H 1.09005 * 109.49388 * 183.06457 * 24 14 13 49 49 H 1.09000 * 109.62549 * 350.89650 * 25 11 9 50 50 H 1.09003 * 109.62960 * 111.47040 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9885 6 6 3.6762 -2.0081 2.2943 7 6 5.0246 -2.7054 2.1033 8 7 5.4176 -3.3596 3.3539 9 6 6.5784 -4.0409 3.4221 10 8 7.2548 -4.1912 2.4231 11 7 6.9896 -4.5555 4.5980 12 6 8.3001 -5.2124 4.7175 13 6 9.0431 -4.5923 5.9114 14 7 8.1947 -4.6778 7.1076 15 6 8.9314 -4.2568 8.3068 16 6 10.0472 -5.2325 8.5791 17 1 10.1941 -6.0807 7.9269 18 6 10.8799 -5.0428 9.6615 19 7 10.7007 -4.0102 10.4561 20 14 12.2634 -6.2517 9.9987 21 1 13.4916 -5.8084 9.2915 22 1 12.5263 -6.3084 11.4592 23 1 11.8722 -7.5997 9.5136 24 6 6.9629 -3.8943 6.9443 25 6 6.1372 -4.4804 5.7942 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 4.0200 -0.5873 0.7123 34 1 3.1809 -2.0706 0.1985 35 1 2.9224 -2.7453 2.5709 36 1 3.7614 -1.2617 3.0841 37 1 4.9390 -3.4519 1.3137 38 1 5.7787 -1.9687 1.8266 39 1 4.8419 -3.3029 4.1325 40 1 8.1605 -6.2805 4.8840 41 1 8.8741 -5.0532 3.8047 42 1 9.2690 -3.5471 5.6998 43 1 9.9710 -5.1375 6.0839 44 1 9.3489 -3.2629 8.1464 45 1 8.2534 -4.2329 9.1600 46 1 11.2868 -3.8766 11.2174 47 1 7.2177 -2.8588 6.7183 48 1 6.3821 -3.9334 7.8659 49 1 5.2805 -3.8372 5.5935 50 1 5.7936 -5.4796 6.0623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601544659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:02 Heat of formation + Delta-G solvation = -73.846293 kcal Electronic energy + Delta-G solvation = -26003.020846 eV Core-core repulsion = 22258.338793 eV Total energy + Delta-G solvation = -3744.682053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23322 -38.88823 -37.70593 -35.71332 -34.40661 -33.45997 -32.40594 -31.45441 -30.48540 -28.20919 -27.68039 -25.90415 -25.06350 -23.17164 -22.16512 -22.09514 -21.59277 -20.71291 -19.22207 -17.92795 -17.30710 -16.50896 -16.39868 -16.10388 -15.52215 -15.31204 -14.89048 -14.60224 -14.54745 -14.31642 -13.96817 -13.78365 -13.61372 -13.49476 -13.21269 -13.04201 -12.74179 -12.58536 -12.24439 -12.04683 -11.98410 -11.93830 -11.71078 -11.37607 -11.27715 -11.13893 -11.07899 -10.82618 -10.74612 -10.61940 -10.50809 -10.00323 -9.96176 -9.85090 -9.27647 -9.16962 -8.48570 -8.32194 -7.32438 -6.06152 -4.07926 2.63058 3.26067 3.30467 3.30803 3.37066 3.41211 3.93736 4.39283 4.41671 4.52295 4.62502 4.68811 4.71970 4.76995 4.83923 5.04439 5.14789 5.17032 5.21895 5.28784 5.30642 5.34294 5.36784 5.38338 5.41556 5.45618 5.64801 5.72373 5.73436 5.77989 5.79200 5.84195 5.94802 6.04469 6.19862 6.40309 6.43254 6.56288 6.69020 6.84812 7.05277 7.22037 7.28307 7.74461 7.99337 8.01852 8.12494 8.47728 8.67342 8.99423 9.56723 11.04626 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.031591 B = 0.001915 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.118746 B =14618.011249 C =15043.293922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 C -0.176 4.176 4 O -0.383 6.383 5 C 0.067 3.933 6 C -0.131 4.131 7 C 0.143 3.857 8 N -0.751 5.751 9 C 0.708 3.292 10 O -0.597 6.597 11 N -0.625 5.625 12 C 0.133 3.867 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.193 3.807 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.272 1.272 24 C 0.040 3.960 25 C 0.118 3.882 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.396 0.604 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.024 0.976 43 H 0.097 0.903 44 H -0.009 1.009 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.026 0.974 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.120 7.106 -18.996 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.234 4.234 4 O -0.303 6.303 5 C -0.010 4.010 6 C -0.169 4.169 7 C 0.018 3.982 8 N -0.409 5.409 9 C 0.409 3.591 10 O -0.476 6.476 11 N -0.362 5.362 12 C 0.010 3.990 13 C -0.079 4.079 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.548 4.548 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.089 4.089 25 C -0.005 4.005 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.115 0.885 44 H 0.009 0.991 45 H 0.050 0.950 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.768 6.605 -19.327 27.738 hybrid contribution 0.843 0.444 0.485 1.069 sum -17.925 7.049 -18.841 26.944 Atomic orbital electron populations 1.21869 0.93567 1.02750 1.02564 1.22085 0.95030 0.92477 0.88098 1.22310 1.01663 0.96766 1.02653 1.87908 1.36555 1.70049 1.35771 1.22350 0.85770 0.95599 0.97318 1.21675 0.96647 1.00473 0.98062 1.20953 0.94755 0.96257 0.86239 1.45197 1.22830 1.57802 1.15111 1.15797 0.81220 0.78474 0.83581 1.90883 1.57059 1.65220 1.34420 1.47415 1.20032 1.60779 1.07984 1.21836 0.81736 0.96414 0.98987 1.22455 0.97191 0.98870 0.89337 1.62080 1.05533 1.54205 1.04163 1.19732 0.92874 0.94642 0.85900 1.21147 1.12565 1.10012 1.11071 0.91743 1.24992 0.97910 0.95672 0.96004 1.69957 1.38908 1.28667 1.16226 0.86490 0.82093 0.81483 0.77309 1.20724 1.21277 1.19724 1.22384 0.94026 0.95025 0.97502 1.21773 0.92311 1.01518 0.84936 0.91733 0.91258 0.91970 0.92201 0.91694 0.92401 0.91653 0.92954 0.92920 0.90351 0.90314 0.91487 0.91648 0.76715 0.91127 0.89377 0.95749 0.88478 0.99119 0.95042 0.92896 0.95540 0.90101 0.91251 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.56 37.16 0.36 -0.47 16 2 C 0.08 0.53 3.34 -26.73 -0.09 0.44 16 3 C -0.18 -1.04 9.53 37.16 0.35 -0.68 16 4 O -0.38 -3.32 9.99 -35.23 -0.35 -3.67 16 5 C 0.07 0.49 5.75 37.16 0.21 0.70 16 6 C -0.13 -0.98 5.70 -26.73 -0.15 -1.14 16 7 C 0.14 1.39 5.68 -4.04 -0.02 1.37 16 8 N -0.75 -8.70 5.47 -65.23 -0.36 -9.06 16 9 C 0.71 11.11 8.31 -86.92 -0.72 10.39 16 10 O -0.60 -11.41 15.83 5.30 0.08 -11.33 16 11 N -0.63 -9.68 3.00 -177.92 -0.53 -10.21 16 12 C 0.13 2.23 6.61 -3.37 -0.02 2.20 16 13 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 14 N -0.53 -11.05 4.62 -235.46 -1.09 -12.13 16 15 C 0.19 4.90 4.72 -4.97 -0.02 4.88 16 16 C -0.51 -13.96 8.41 -34.44 -0.29 -14.25 16 17 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 20 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.04 0.67 5.62 -3.71 -0.02 0.65 16 25 C 0.12 1.58 6.59 -3.61 -0.02 1.56 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 7.79 -51.93 -0.40 -0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.40 3.71 5.97 -40.82 -0.24 3.46 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.49 7.09 -51.93 -0.37 1.12 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 1.99 6.67 -51.93 -0.35 1.65 16 44 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 45 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 49 H 0.07 0.69 5.63 -51.93 -0.29 0.40 16 50 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -32.75 396.14 -10.27 -43.02 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -9.15 Total: -1.41 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.56 Total: 8.07 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -1.24 Total: -56.99 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.27 Total: -15.00 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.75 -10.27 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601544659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.830 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds