Wall clock time and date at job start Tue Mar 31 2020 11:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47204 * 2 1 4 4 O 1.42902 * 109.46862 * 119.99610 * 2 1 3 5 5 C 1.42895 * 114.00019 * 150.00241 * 4 2 1 6 6 C 1.53003 * 109.47163 * 179.97438 * 5 4 2 7 7 O 1.42900 * 109.47060 * 65.00100 * 6 5 4 8 8 C 1.42900 * 114.00054 * 179.97438 * 7 6 5 9 9 C 1.53116 * 109.52268 * 209.99809 * 8 7 6 10 10 C 1.53040 * 109.27607 * 182.37542 * 9 8 7 11 11 N 1.46853 * 109.52044 * 59.18022 * 10 9 8 12 12 C 1.46898 * 110.99552 * 174.15636 * 11 10 9 13 13 C 1.53006 * 109.47025 * 176.22316 * 12 11 10 14 14 H 1.09011 * 109.46853 * 301.94935 * 13 12 11 15 15 C 1.53002 * 109.47145 * 61.94494 * 13 12 11 16 16 C 1.52992 * 109.47290 * 181.94775 * 13 12 11 17 17 C 1.50698 * 109.47069 * 174.99569 * 16 13 12 18 18 H 1.07997 * 120.00232 * 0.02562 * 17 16 13 19 19 C 1.37889 * 120.00230 * 179.97438 * 17 16 13 20 20 N 1.31512 * 119.99366 * 359.72767 * 19 17 16 21 21 Si 1.86792 * 119.99968 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46823 * 179.72751 * 21 19 17 23 23 H 1.48503 * 109.47128 * 299.71943 * 21 19 17 24 24 H 1.48495 * 109.47637 * 59.72353 * 21 19 17 25 25 C 1.46838 * 111.19851 * 298.25803 * 11 10 9 26 26 C 1.53032 * 109.52628 * 61.74563 * 25 11 10 27 27 H 1.08998 * 109.47515 * 300.00663 * 1 2 3 28 28 H 1.09005 * 109.47165 * 60.00289 * 1 2 3 29 29 H 1.08998 * 109.47510 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47380 * 239.99872 * 2 1 3 31 31 H 1.08998 * 109.47425 * 59.99282 * 3 2 1 32 32 H 1.08999 * 109.47546 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46823 * 299.99920 * 3 2 1 34 34 H 1.09004 * 109.47163 * 60.00253 * 5 4 2 35 35 H 1.09000 * 109.47115 * 299.99891 * 5 4 2 36 36 H 1.09000 * 109.47195 * 304.99859 * 6 5 4 37 37 H 1.09006 * 109.47040 * 184.99909 * 6 5 4 38 38 H 1.08997 * 109.52368 * 330.12938 * 8 7 6 39 39 H 1.09004 * 109.50275 * 62.44114 * 9 8 7 40 40 H 1.08990 * 109.53935 * 302.33743 * 9 8 7 41 41 H 1.09000 * 109.46840 * 299.16903 * 10 9 8 42 42 H 1.09001 * 109.45035 * 179.18974 * 10 9 8 43 43 H 1.08999 * 109.47594 * 56.22550 * 12 11 10 44 44 H 1.08999 * 109.47830 * 296.22071 * 12 11 10 45 45 H 1.08995 * 109.47121 * 180.02562 * 15 13 12 46 46 H 1.08996 * 109.46939 * 300.00301 * 15 13 12 47 47 H 1.08999 * 109.46860 * 60.00105 * 15 13 12 48 48 H 1.09004 * 109.47196 * 55.00411 * 16 13 12 49 49 H 1.08996 * 109.47636 * 295.00191 * 16 13 12 50 50 H 0.96998 * 120.00518 * 0.27602 * 20 19 17 51 51 H 1.09001 * 109.45909 * 181.76128 * 25 11 10 52 52 H 1.09004 * 109.46457 * 301.72412 * 25 11 10 53 53 H 1.09002 * 109.50627 * 180.88158 * 26 25 11 54 54 H 1.08995 * 109.50565 * 60.75804 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2659 -1.3244 0.9888 6 6 3.6759 -2.0079 2.2948 7 8 2.7495 -3.0533 2.5965 8 6 3.0433 -3.7599 3.8034 9 6 2.5528 -5.2053 3.6825 10 6 2.8166 -5.9401 4.9988 11 7 2.1145 -5.2558 6.0921 12 6 2.2312 -6.0108 7.3467 13 6 1.5702 -5.2230 8.4795 14 1 2.0431 -4.2446 8.5658 15 6 0.0813 -5.0447 8.1755 16 6 1.7342 -5.9865 9.7951 17 6 1.1925 -5.1551 10.9293 18 1 0.7728 -4.1799 10.7315 19 6 1.2318 -5.6399 12.2196 20 7 1.7371 -6.8301 12.4596 21 14 0.5597 -4.6096 13.6253 22 1 0.7125 -5.3537 14.9014 23 1 1.3108 -3.3310 13.7050 24 1 -0.8781 -4.3251 13.3872 25 6 2.6023 -3.8807 6.2579 26 6 2.3321 -3.0844 4.9793 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 4.0199 -0.5873 0.7127 35 1 3.1808 -2.0706 0.1989 36 1 3.6748 -1.2769 3.1034 37 1 4.6757 -2.4285 2.1865 38 1 4.1195 -3.7536 3.9764 39 1 3.0868 -5.7043 2.8738 40 1 1.4837 -5.2109 3.4706 41 1 3.8873 -5.9467 5.2029 42 1 2.4553 -6.9655 4.9207 43 1 3.2844 -6.1677 7.5798 44 1 1.7357 -6.9755 7.2378 45 1 -0.3896 -4.4831 8.9823 46 1 -0.0356 -4.5008 7.2383 47 1 -0.3916 -6.0230 8.0892 48 1 2.7910 -6.1911 9.9672 49 1 1.1863 -6.9271 9.7402 50 1 2.0858 -7.3652 11.7296 51 1 2.0856 -3.4106 7.0946 52 1 3.6741 -3.8970 6.4560 53 1 2.7084 -2.0682 5.0970 54 1 1.2594 -3.0560 4.7881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602683352.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:13 Heat of formation + Delta-G solvation = -140.232524 kcal Electronic energy + Delta-G solvation = -26832.132696 eV Core-core repulsion = 23188.112263 eV Total energy + Delta-G solvation = -3644.020432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.65700 -39.50438 -38.53735 -36.81725 -34.71253 -33.83328 -32.47819 -31.87342 -30.13749 -28.43880 -28.09336 -27.20159 -25.16946 -24.38897 -23.67254 -23.22369 -22.22755 -21.05033 -20.45609 -18.93016 -18.18383 -17.75722 -17.03135 -16.30284 -16.28428 -16.13190 -16.01792 -15.70403 -15.61215 -15.30529 -15.03538 -14.90987 -14.31624 -14.24814 -13.78093 -13.72411 -13.45092 -13.37071 -13.33020 -13.24259 -13.04580 -13.00462 -12.81507 -12.52163 -12.44758 -12.26795 -12.18184 -12.07523 -11.95806 -11.84737 -11.77157 -11.58351 -11.44855 -11.39724 -11.27177 -10.56867 -10.52056 -10.50624 -10.36719 -9.27892 -8.65141 -6.33911 1.52064 1.60676 1.79576 2.57402 2.61818 2.74136 2.90498 3.18627 3.74637 3.77204 3.92430 4.00524 4.05423 4.08496 4.12725 4.23007 4.23494 4.26901 4.29790 4.35258 4.36493 4.39654 4.47094 4.52207 4.54433 4.66810 4.74464 4.76754 4.79118 4.80894 4.82198 4.89745 4.91978 4.93253 4.94509 4.97669 5.02586 5.08599 5.18351 5.28542 5.29181 5.32427 5.32761 5.36286 5.46054 5.63823 6.00909 6.09900 6.18385 6.23459 6.26207 6.39548 6.62626 7.46489 8.75442 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.002164 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.504213 B =12934.628157 C =13756.512951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 C -0.172 4.172 4 O -0.402 6.402 5 C 0.063 3.937 6 C 0.056 3.944 7 O -0.390 6.390 8 C 0.094 3.906 9 C -0.103 4.103 10 C 0.057 3.943 11 N -0.539 5.539 12 C 0.073 3.927 13 C -0.071 4.071 14 H 0.056 0.944 15 C -0.112 4.112 16 C 0.017 3.983 17 C -0.603 4.603 18 H 0.051 0.949 19 C -0.044 4.044 20 N -0.941 5.941 21 Si 1.116 2.884 22 H -0.285 1.285 23 H -0.269 1.269 24 H -0.270 1.270 25 C 0.054 3.946 26 C -0.126 4.126 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.022 0.978 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.036 0.964 48 H -0.018 1.018 49 H -0.013 1.013 50 H 0.254 0.746 51 H 0.073 0.927 52 H 0.031 0.969 53 H 0.071 0.929 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 12.808 -29.154 32.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 C -0.229 4.229 4 O -0.323 6.323 5 C -0.013 4.013 6 C -0.020 4.020 7 O -0.309 6.309 8 C 0.036 3.964 9 C -0.141 4.141 10 C -0.070 4.070 11 N -0.264 5.264 12 C -0.055 4.055 13 C -0.090 4.090 14 H 0.075 0.925 15 C -0.169 4.169 16 C -0.020 4.020 17 C -0.641 4.641 18 H 0.069 0.931 19 C -0.241 4.241 20 N -0.579 5.579 21 Si 0.937 3.063 22 H -0.210 1.210 23 H -0.194 1.194 24 H -0.195 1.195 25 C -0.074 4.074 26 C -0.164 4.164 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.040 0.960 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.001 0.999 49 H 0.006 0.994 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.049 0.951 53 H 0.090 0.910 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.491 12.803 -27.623 30.645 hybrid contribution 1.503 -0.372 -1.061 1.877 sum 4.994 12.431 -28.684 31.658 Atomic orbital electron populations 1.21878 0.93597 1.02343 1.02897 1.22269 0.95347 0.92952 0.87924 1.22281 1.01623 0.96081 1.02912 1.88004 1.37336 1.70257 1.36673 1.22662 0.86369 0.95588 0.96684 1.22750 0.92796 0.89568 0.96882 1.87964 1.52816 1.48532 1.41608 1.22128 0.98309 0.91968 0.84006 1.21556 1.02643 0.93193 0.96659 1.22107 0.96196 0.98425 0.90305 1.61964 1.56996 1.02315 1.05099 1.22027 0.97739 0.97065 0.88666 1.21023 0.96904 0.98102 0.92979 0.92535 1.21463 0.94851 1.00481 1.00094 1.19175 0.93877 0.95039 0.93935 1.22411 1.42801 1.04597 0.94320 0.93074 1.27404 0.95389 0.97922 1.03358 1.70914 1.39935 1.11523 1.35509 0.82954 0.76693 0.74080 0.72579 1.21025 1.19446 1.19499 1.22108 0.97652 0.89334 0.98309 1.21974 1.01880 0.98720 0.93843 0.92844 0.89321 0.92914 0.91207 0.92816 0.92151 0.90060 0.89910 0.92251 0.93020 0.89849 0.91513 0.89359 0.91411 0.94507 0.89675 0.95999 0.91195 0.94477 0.91685 0.94433 0.99932 0.99429 0.93680 0.90875 0.95084 0.91004 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.56 71.98 0.69 -1.40 16 2 C 0.07 1.04 3.34 30.59 0.10 1.14 16 3 C -0.17 -1.92 9.53 71.98 0.69 -1.24 16 4 O -0.40 -8.14 9.95 -144.34 -1.44 -9.58 16 5 C 0.06 0.95 6.13 71.98 0.44 1.39 16 6 C 0.06 0.94 6.13 71.98 0.44 1.38 16 7 O -0.39 -8.80 9.96 -144.34 -1.44 -10.24 16 8 C 0.09 2.01 2.68 30.67 0.08 2.09 16 9 C -0.10 -2.18 5.75 30.65 0.18 -2.00 16 10 C 0.06 1.36 5.46 86.33 0.47 1.83 16 11 N -0.54 -15.91 4.08 -896.36 -3.66 -19.57 16 12 C 0.07 2.55 4.55 86.31 0.39 2.95 16 13 C -0.07 -3.00 1.85 -10.79 -0.02 -3.02 16 14 H 0.06 2.41 6.07 -2.38 -0.01 2.39 16 15 C -0.11 -4.46 8.79 71.98 0.63 -3.83 16 16 C 0.02 0.91 3.76 29.84 0.11 1.03 16 17 C -0.60 -34.92 8.41 25.60 0.22 -34.70 16 18 H 0.05 2.89 7.06 -2.91 -0.02 2.87 16 19 C -0.04 -2.60 5.46 84.66 0.46 -2.14 16 20 N -0.94 -59.64 13.65 21.45 0.29 -59.35 16 21 Si 1.12 51.43 29.90 68.60 2.05 53.48 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 C 0.05 1.52 4.97 86.33 0.43 1.95 16 26 C -0.13 -3.10 5.72 30.65 0.18 -2.93 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.81 7.79 -2.39 -0.02 0.79 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.60 7.87 -2.39 -0.02 0.58 16 33 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.08 0.83 7.87 -2.39 -0.02 0.81 16 35 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.05 0.91 7.96 -2.39 -0.02 0.89 16 37 H 0.08 0.99 8.09 -2.38 -0.02 0.98 16 38 H 0.07 1.27 7.79 -2.39 -0.02 1.25 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.04 1.58 6.95 -2.39 -0.02 1.57 16 46 H 0.06 2.31 7.54 -2.39 -0.02 2.30 16 47 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 48 H -0.02 -1.00 8.01 -2.38 -0.02 -1.01 16 49 H -0.01 -0.71 8.00 -2.39 -0.02 -0.73 16 50 H 0.25 16.30 7.22 -92.71 -0.67 15.63 16 51 H 0.07 2.31 5.70 -2.39 -0.01 2.30 16 52 H 0.03 0.85 8.14 -2.38 -0.02 0.84 16 53 H 0.07 1.64 7.96 -2.39 -0.02 1.62 16 54 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.11 414.87 2.20 -66.91 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.91 Total: 15.85 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 5.49 Total: -37.50 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -3.37 Total: -78.91 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -2.87 Total: -19.82 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -69.11 2.20 -66.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602683352.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.324 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds