Wall clock time and date at job start Tue Mar 31 2020 11:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.46761 * 2 1 4 4 C 1.42909 * 113.99754 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46948 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47369 * 64.99881 * 5 4 3 7 7 C 1.46497 * 120.00249 * 269.99784 * 6 5 4 8 8 C 1.52999 * 109.47067 * 269.99936 * 7 6 5 9 9 C 1.34778 * 119.99545 * 90.00214 * 6 5 4 10 10 O 1.21585 * 120.00569 * 359.97438 * 9 6 5 11 11 N 1.34781 * 119.99776 * 180.02562 * 9 6 5 12 12 C 1.46500 * 119.99994 * 179.97438 * 11 9 6 13 13 C 1.53076 * 109.43981 * 84.79590 * 12 11 9 14 14 C 1.53183 * 109.29478 * 181.23571 * 13 12 11 15 15 N 1.46930 * 108.89468 * 305.57480 * 14 13 12 16 16 C 1.36937 * 120.63259 * 233.51494 * 15 14 13 17 17 H 1.08000 * 119.99761 * 151.83401 * 16 15 14 18 18 C 1.38806 * 120.00219 * 331.83653 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46925 * 118.73328 * 53.53726 * 15 14 13 25 25 C 1.53033 * 109.45902 * 204.99610 * 12 11 9 26 26 H 1.09002 * 109.47170 * 60.00195 * 1 2 3 27 27 H 1.09006 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47324 * 299.99927 * 1 2 3 29 29 H 1.08997 * 109.47324 * 240.00073 * 2 1 3 30 30 H 1.09006 * 109.46798 * 120.00126 * 2 1 3 31 31 H 1.08995 * 109.46956 * 59.99878 * 4 3 2 32 32 H 1.09005 * 109.47019 * 300.00026 * 4 3 2 33 33 H 1.09000 * 109.47291 * 305.00122 * 5 4 3 34 34 H 1.09005 * 109.47006 * 184.99895 * 5 4 3 35 35 H 1.08997 * 109.46802 * 30.00017 * 7 6 5 36 36 H 1.09001 * 109.46841 * 149.99845 * 7 6 5 37 37 H 1.08997 * 109.47376 * 299.99730 * 8 7 6 38 38 H 1.08996 * 109.46963 * 60.00478 * 8 7 6 39 39 H 1.09000 * 109.46788 * 179.97438 * 8 7 6 40 40 H 0.97007 * 119.99982 * 359.97438 * 11 9 6 41 41 H 1.08994 * 109.45870 * 324.97548 * 12 11 9 42 42 H 1.09005 * 109.39190 * 61.35477 * 13 12 11 43 43 H 1.09004 * 109.62337 * 301.25270 * 13 12 11 44 44 H 1.09005 * 109.58619 * 185.72200 * 14 13 12 45 45 H 1.08998 * 109.58733 * 65.43770 * 14 13 12 46 46 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.58688 * 66.18006 * 24 15 14 48 48 H 1.08996 * 109.58570 * 186.45714 * 24 15 14 49 49 H 1.09003 * 109.49897 * 58.68032 * 25 12 11 50 50 H 1.09000 * 109.52987 * 298.59684 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 7 3.3867 3.5604 1.2530 7 6 2.0567 4.1680 1.3424 8 6 2.1409 5.6413 0.9383 9 6 4.2070 3.5736 2.3223 10 8 5.3107 3.0690 2.2484 11 7 3.8033 4.1454 3.4742 12 6 4.6946 4.1593 4.6368 13 6 5.6412 5.3583 4.5387 14 6 6.5919 5.3523 5.7398 15 7 5.7976 5.3066 6.9750 16 6 5.9886 6.2363 7.9621 17 1 5.1734 6.5017 8.6190 18 6 7.2298 6.8376 8.1185 19 7 8.2962 6.2996 7.5654 20 14 7.3870 8.4105 9.1139 21 1 6.0509 8.8071 9.6269 22 1 8.3078 8.1832 10.2566 23 1 7.9269 9.4911 8.2503 24 6 4.7949 4.2441 7.1312 25 6 3.8619 4.2642 5.9164 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8340 0.9765 -0.8891 32 1 3.8333 0.9767 0.8909 33 1 3.3498 3.4417 -0.8406 34 1 4.9082 3.0255 -0.0879 35 1 1.3731 3.6461 0.6728 36 1 1.6908 4.0924 2.3664 37 1 2.8245 6.1632 1.6078 38 1 2.5067 5.7168 -0.0857 39 1 1.1512 6.0932 1.0044 40 1 2.9226 4.5477 3.5334 41 1 5.2784 3.2392 4.6577 42 1 5.0592 6.2800 4.5399 43 1 6.2193 5.2939 3.6168 44 1 7.1995 6.2572 5.7294 45 1 7.2393 4.4768 5.6890 46 1 9.1636 6.7196 7.6749 47 1 5.2939 3.2769 7.1926 48 1 4.2187 4.4162 8.0402 49 1 3.1733 3.4211 5.9725 50 1 3.2962 5.1959 5.9077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609356576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:10 Heat of formation + Delta-G solvation = -58.150571 kcal Electronic energy + Delta-G solvation = -27512.566337 eV Core-core repulsion = 23768.564902 eV Total energy + Delta-G solvation = -3744.001435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.23610 -38.31692 -37.43906 -35.78573 -34.42692 -32.51592 -31.79514 -30.77493 -30.02211 -29.53499 -28.20352 -24.98924 -23.52574 -23.19328 -23.00617 -22.16282 -21.56342 -19.69690 -19.13963 -17.95479 -16.92060 -16.78535 -16.52403 -15.98758 -15.50382 -14.89751 -14.59005 -14.27542 -14.17828 -14.00551 -13.69130 -13.48903 -13.42968 -13.11851 -12.94190 -12.84231 -12.48363 -12.32264 -12.23558 -12.03038 -11.79232 -11.60761 -11.43426 -11.37511 -11.17815 -11.05785 -10.83942 -10.71180 -10.32165 -10.17329 -10.02602 -9.91631 -9.77751 -9.70748 -9.48311 -8.79767 -8.49945 -8.29791 -6.64269 -5.74981 -3.18064 2.77651 3.37163 3.39331 3.46910 3.49046 3.52105 4.08676 4.52249 4.73666 4.79920 4.83254 4.97601 4.98863 5.07346 5.13170 5.18827 5.27397 5.31434 5.37081 5.44890 5.51432 5.56792 5.59563 5.63571 5.64884 5.71540 5.74486 5.79733 5.90499 6.06961 6.15188 6.29459 6.40920 6.51180 6.53591 6.68236 6.70630 6.83610 6.92584 6.98043 7.04105 7.17744 7.44460 7.73743 7.83325 8.17467 8.48873 8.85062 9.24712 9.88128 10.45154 11.33507 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.002706 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.753643 B =10343.237062 C =10436.951499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.045 3.955 5 C 0.139 3.861 6 N -0.627 5.627 7 C 0.111 3.889 8 C -0.174 4.174 9 C 0.704 3.296 10 O -0.591 6.591 11 N -0.739 5.739 12 C 0.168 3.832 13 C -0.145 4.145 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.149 3.851 25 C -0.138 4.138 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.390 0.610 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.020 0.980 46 H 0.253 0.747 47 H 0.020 0.980 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 -8.577 -17.188 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.307 6.307 4 C -0.033 4.033 5 C 0.015 3.985 6 N -0.365 5.365 7 C -0.012 4.012 8 C -0.233 4.233 9 C 0.405 3.595 10 O -0.470 6.470 11 N -0.393 5.393 12 C 0.064 3.936 13 C -0.186 4.186 14 C 0.048 3.952 15 N -0.316 5.316 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.022 3.978 25 C -0.178 4.178 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.225 0.775 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.038 0.962 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.369 -8.729 -17.189 24.655 hybrid contribution -0.136 0.748 0.438 0.877 sum -15.505 -7.982 -16.752 24.181 Atomic orbital electron populations 1.21730 0.93844 1.02132 1.02995 1.22424 0.95441 0.84148 0.99929 1.87852 1.21257 1.26100 1.95450 1.23042 0.81228 0.98287 1.00726 1.21291 1.01196 0.90465 0.85501 1.47082 1.16240 1.61477 1.11667 1.21451 0.84361 0.93239 1.02183 1.22253 1.02199 0.96556 1.02243 1.15973 0.83844 0.79262 0.80383 1.90909 1.20530 1.52319 1.83197 1.45658 1.19957 1.62073 1.11621 1.20892 0.90443 0.99934 0.82333 1.22564 0.98752 0.96696 1.00551 1.20749 0.90954 1.01698 0.81849 1.44113 1.41822 1.29590 1.16030 1.19208 0.94154 1.14552 1.10291 0.91644 1.25068 0.95139 1.00029 0.99472 1.70048 0.97986 1.38577 1.47919 0.86240 0.77583 0.83593 0.79441 1.20284 1.21750 1.21591 1.20829 0.90778 0.91968 0.94229 1.22328 0.98668 1.00819 0.95991 0.91981 0.91288 0.91868 0.93662 0.93570 0.92680 0.92648 0.90103 0.88305 0.89403 0.91287 0.92223 0.92383 0.91658 0.77536 0.90227 0.92918 0.92837 0.89375 0.96175 0.93659 0.96235 0.92389 0.92753 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.39 -3.90 9.17 -35.23 -0.32 -4.22 16 4 C 0.05 0.46 6.28 37.16 0.23 0.69 16 5 C 0.14 1.48 5.81 -4.04 -0.02 1.46 16 6 N -0.63 -7.67 2.44 -179.42 -0.44 -8.11 16 7 C 0.11 1.05 5.71 -4.04 -0.02 1.03 16 8 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 9 C 0.70 11.36 8.24 -86.91 -0.72 10.64 16 10 O -0.59 -11.90 15.58 5.29 0.08 -11.82 16 11 N -0.74 -11.25 4.94 -58.62 -0.29 -11.54 16 12 C 0.17 3.06 2.41 -67.87 -0.16 2.90 16 13 C -0.15 -3.01 5.66 -26.60 -0.15 -3.16 16 14 C 0.17 4.33 5.30 -3.71 -0.02 4.31 16 15 N -0.59 -15.04 3.00 -172.33 -0.52 -15.56 16 16 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 17 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -26.66 11.20 55.49 0.62 -26.04 16 20 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 25 C -0.14 -2.37 5.55 -26.62 -0.15 -2.52 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.10 1.16 7.42 -51.93 -0.39 0.77 16 35 H 0.09 0.77 7.11 -51.93 -0.37 0.40 16 36 H 0.07 0.62 6.36 -51.93 -0.33 0.29 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.39 4.94 6.33 -40.82 -0.26 4.68 16 41 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 393.73 15.07 5.93 5.93 Total: -1.00 -32.66 393.73 -9.41 -42.07 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -9.20 Total: 2.18 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -0.26 Total: 10.28 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.62 Total: -61.26 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.24 Total: -16.04 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.66 -9.41 -42.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609356576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.084 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds