Wall clock time and date at job start Tue Mar 31 2020 11:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.46761 * 2 1 4 4 C 1.42909 * 113.99754 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46948 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47369 * 64.99881 * 5 4 3 7 7 C 1.46497 * 120.00249 * 269.99784 * 6 5 4 8 8 C 1.52999 * 109.47067 * 269.99936 * 7 6 5 9 9 C 1.34778 * 119.99545 * 90.00214 * 6 5 4 10 10 O 1.21585 * 120.00569 * 359.97438 * 9 6 5 11 11 N 1.34781 * 119.99776 * 180.02562 * 9 6 5 12 12 C 1.46500 * 119.99994 * 179.97438 * 11 9 6 13 13 C 1.53076 * 109.43981 * 84.79590 * 12 11 9 14 14 C 1.53183 * 109.29478 * 181.23571 * 13 12 11 15 15 N 1.46930 * 108.89468 * 305.57480 * 14 13 12 16 16 C 1.36937 * 120.63259 * 233.51494 * 15 14 13 17 17 H 1.08000 * 119.99761 * 151.83401 * 16 15 14 18 18 C 1.38806 * 120.00219 * 331.83653 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46925 * 118.73328 * 53.53726 * 15 14 13 25 25 C 1.53033 * 109.45902 * 204.99610 * 12 11 9 26 26 H 1.09002 * 109.47170 * 60.00195 * 1 2 3 27 27 H 1.09006 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47324 * 299.99927 * 1 2 3 29 29 H 1.08997 * 109.47324 * 240.00073 * 2 1 3 30 30 H 1.09006 * 109.46798 * 120.00126 * 2 1 3 31 31 H 1.08995 * 109.46956 * 59.99878 * 4 3 2 32 32 H 1.09005 * 109.47019 * 300.00026 * 4 3 2 33 33 H 1.09000 * 109.47291 * 305.00122 * 5 4 3 34 34 H 1.09005 * 109.47006 * 184.99895 * 5 4 3 35 35 H 1.08997 * 109.46802 * 30.00017 * 7 6 5 36 36 H 1.09001 * 109.46841 * 149.99845 * 7 6 5 37 37 H 1.08997 * 109.47376 * 299.99730 * 8 7 6 38 38 H 1.08996 * 109.46963 * 60.00478 * 8 7 6 39 39 H 1.09000 * 109.46788 * 179.97438 * 8 7 6 40 40 H 0.97007 * 119.99982 * 359.97438 * 11 9 6 41 41 H 1.08994 * 109.45870 * 324.97548 * 12 11 9 42 42 H 1.09005 * 109.39190 * 61.35477 * 13 12 11 43 43 H 1.09004 * 109.62337 * 301.25270 * 13 12 11 44 44 H 1.09005 * 109.58619 * 185.72200 * 14 13 12 45 45 H 1.08998 * 109.58733 * 65.43770 * 14 13 12 46 46 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.58688 * 66.18006 * 24 15 14 48 48 H 1.08996 * 109.58570 * 186.45714 * 24 15 14 49 49 H 1.09003 * 109.49897 * 58.68032 * 25 12 11 50 50 H 1.09000 * 109.52987 * 298.59684 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 7 3.3867 3.5604 1.2530 7 6 2.0567 4.1680 1.3424 8 6 2.1409 5.6413 0.9383 9 6 4.2070 3.5736 2.3223 10 8 5.3107 3.0690 2.2484 11 7 3.8033 4.1454 3.4742 12 6 4.6946 4.1593 4.6368 13 6 5.6412 5.3583 4.5387 14 6 6.5919 5.3523 5.7398 15 7 5.7976 5.3066 6.9750 16 6 5.9886 6.2363 7.9621 17 1 5.1734 6.5017 8.6190 18 6 7.2298 6.8376 8.1185 19 7 8.2962 6.2996 7.5654 20 14 7.3870 8.4105 9.1139 21 1 6.0509 8.8071 9.6269 22 1 8.3078 8.1832 10.2566 23 1 7.9269 9.4911 8.2503 24 6 4.7949 4.2441 7.1312 25 6 3.8619 4.2642 5.9164 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8340 0.9765 -0.8891 32 1 3.8333 0.9767 0.8909 33 1 3.3498 3.4417 -0.8406 34 1 4.9082 3.0255 -0.0879 35 1 1.3731 3.6461 0.6728 36 1 1.6908 4.0924 2.3664 37 1 2.8245 6.1632 1.6078 38 1 2.5067 5.7168 -0.0857 39 1 1.1512 6.0932 1.0044 40 1 2.9226 4.5477 3.5334 41 1 5.2784 3.2392 4.6577 42 1 5.0592 6.2800 4.5399 43 1 6.2193 5.2939 3.6168 44 1 7.1995 6.2572 5.7294 45 1 7.2393 4.4768 5.6890 46 1 9.1636 6.7196 7.6749 47 1 5.2939 3.2769 7.1926 48 1 4.2187 4.4162 8.0402 49 1 3.1733 3.4211 5.9725 50 1 3.2962 5.1959 5.9077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609356576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:09 Heat of formation + Delta-G solvation = -78.648761 kcal Electronic energy + Delta-G solvation = -27513.455205 eV Core-core repulsion = 23768.564902 eV Total energy + Delta-G solvation = -3744.890303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.45342 -39.40781 -38.77739 -36.89914 -36.05096 -33.98072 -32.91101 -31.75016 -31.50310 -31.21259 -29.23419 -26.85521 -24.47923 -24.28377 -23.89360 -23.62196 -23.09167 -21.20480 -20.53359 -19.15330 -18.59340 -17.82974 -17.44239 -17.11209 -16.75183 -16.48179 -15.88210 -15.55632 -15.37193 -15.30059 -15.09211 -14.81130 -14.75006 -14.44326 -14.18152 -13.99908 -13.69865 -13.44450 -13.18805 -13.02448 -12.97973 -12.76483 -12.66178 -12.57975 -12.55719 -12.24115 -12.13473 -12.09211 -12.01224 -11.89861 -11.79500 -11.53532 -11.38275 -11.10797 -10.58918 -10.54973 -10.10445 -9.48713 -8.71284 -7.86953 -5.33630 1.47189 1.48720 1.59743 1.67301 2.16763 2.51875 2.74775 2.97233 3.29347 3.66592 3.87556 4.03830 4.07058 4.10480 4.16411 4.20285 4.32116 4.34772 4.39983 4.44010 4.47777 4.50676 4.53140 4.66543 4.67538 4.79769 4.82682 4.86060 4.91005 4.97170 5.00314 5.05949 5.06466 5.08219 5.13381 5.29091 5.31507 5.37783 5.45252 5.60126 5.63065 5.65889 5.70162 5.97991 6.25720 6.39073 7.01903 7.13543 7.61615 7.84328 8.37616 9.20382 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.002706 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.753643 B =10343.237062 C =10436.951499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.395 6.395 4 C 0.052 3.948 5 C 0.135 3.865 6 N -0.619 5.619 7 C 0.109 3.891 8 C -0.168 4.168 9 C 0.698 3.302 10 O -0.637 6.637 11 N -0.726 5.726 12 C 0.181 3.819 13 C -0.127 4.127 14 C 0.184 3.816 15 N -0.609 5.609 16 C -0.259 4.259 17 H 0.075 0.925 18 C -0.056 4.056 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.143 3.857 25 C -0.120 4.120 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.407 0.593 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.054 0.946 45 H -0.012 1.012 46 H 0.249 0.751 47 H 0.011 0.989 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.601 -8.254 -18.028 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.315 6.315 4 C -0.026 4.026 5 C 0.012 3.988 6 N -0.355 5.355 7 C -0.013 4.013 8 C -0.226 4.226 9 C 0.400 3.600 10 O -0.519 6.519 11 N -0.382 5.382 12 C 0.075 3.925 13 C -0.168 4.168 14 C 0.057 3.943 15 N -0.333 5.333 16 C -0.389 4.389 17 H 0.092 0.908 18 C -0.251 4.251 19 N -0.586 5.586 20 Si 0.798 3.202 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.017 3.983 25 C -0.160 4.160 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.244 0.756 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.006 0.994 46 H 0.058 0.942 47 H 0.029 0.971 48 H 0.088 0.912 49 H 0.107 0.893 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.824 -8.410 -18.057 27.406 hybrid contribution 0.868 0.558 0.646 1.217 sum -17.956 -7.852 -17.411 26.214 Atomic orbital electron populations 1.21725 0.92523 1.03174 1.02842 1.22601 0.96511 0.83312 1.00179 1.87823 1.20806 1.27351 1.95488 1.22900 0.81585 0.97692 1.00399 1.21442 1.00700 0.91177 0.85510 1.47165 1.16700 1.60778 1.10905 1.21662 0.82781 0.93731 1.03112 1.22201 1.03025 0.95624 1.01786 1.16178 0.83681 0.78977 0.81185 1.90883 1.22793 1.54214 1.84037 1.45280 1.20106 1.62190 1.10637 1.20500 0.90534 0.97226 0.84239 1.22297 0.98332 0.98349 0.97805 1.20446 0.91377 0.98525 0.83919 1.44358 1.42524 1.30664 1.15729 1.19603 0.94280 1.14749 1.10286 0.90780 1.25897 0.94907 1.03147 1.01149 1.70220 0.98315 1.40094 1.49929 0.85172 0.77955 0.79489 0.77616 1.18535 1.22069 1.21917 1.21031 0.90407 0.90184 0.96718 1.22124 0.97852 1.03000 0.93006 0.91613 0.89717 0.92460 0.92448 0.94336 0.90632 0.95390 0.87358 0.89865 0.88066 0.90546 0.94079 0.92215 0.89432 0.75567 0.92886 0.92234 0.93920 0.92709 0.99405 0.94197 0.97114 0.91237 0.89285 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 71.98 0.74 -0.84 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.39 -7.17 9.17 -148.98 -1.37 -8.53 16 4 C 0.05 1.00 6.28 71.98 0.45 1.45 16 5 C 0.13 2.70 5.81 86.38 0.50 3.20 16 6 N -0.62 -14.28 2.44 -839.84 -2.05 -16.33 16 7 C 0.11 1.75 5.71 86.38 0.49 2.25 16 8 C -0.17 -2.43 10.24 71.98 0.74 -1.69 16 9 C 0.70 22.21 8.24 179.05 1.48 23.68 16 10 O -0.64 -26.31 15.58 -3.98 -0.06 -26.38 16 11 N -0.73 -21.12 4.94 -457.64 -2.26 -23.38 16 12 C 0.18 6.50 2.41 45.03 0.11 6.60 16 13 C -0.13 -5.36 5.66 30.68 0.17 -5.19 16 14 C 0.18 9.56 5.30 86.36 0.46 10.02 16 15 N -0.61 -31.26 3.00 -699.11 -2.09 -33.36 16 16 C -0.26 -14.32 9.58 84.03 0.81 -13.52 16 17 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 18 C -0.06 -3.19 4.92 84.86 0.42 -2.77 16 19 N -0.94 -57.59 11.20 21.65 0.24 -57.35 16 20 Si 0.97 45.39 29.59 68.60 2.03 47.42 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 C 0.14 5.86 6.52 86.36 0.56 6.42 16 25 C -0.12 -3.86 5.55 30.67 0.17 -3.69 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.11 1.57 8.07 -2.39 -0.02 1.56 16 34 H 0.08 1.95 7.42 -2.38 -0.02 1.93 16 35 H 0.10 1.43 7.11 -2.39 -0.02 1.41 16 36 H 0.08 1.13 6.36 -2.39 -0.02 1.11 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.41 9.18 6.33 -92.70 -0.59 8.59 16 41 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 42 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.05 3.19 6.06 -2.38 -0.01 3.18 16 45 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 46 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16 47 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 49 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -73.38 393.73 2.33 -71.06 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.31 Total: 19.72 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 7.57 Total: 27.13 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -6.16 Total: -130.42 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.43 Total: -34.91 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.38 2.33 -71.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609356576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.591 kcal (2) G-P(sol) polarization free energy of solvation -73.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds