Wall clock time and date at job start Tue Mar 31 2020 11:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46728 * 180.02562 * 10 9 7 12 12 C 1.35905 * 116.99842 * 179.97438 * 11 10 9 13 13 C 1.38847 * 119.98036 * 359.97438 * 12 11 10 14 14 C 1.38331 * 120.24251 * 180.02562 * 13 12 11 15 15 Br 1.89101 * 119.90133 * 179.97438 * 14 13 12 16 16 C 1.38082 * 120.19177 * 359.97438 * 14 13 12 17 17 C 1.39600 * 119.95384 * 359.97438 * 16 14 13 18 18 C 1.47743 * 120.12526 * 179.97438 * 17 16 14 19 19 O 1.21465 * 120.00103 * 180.02562 * 18 17 16 20 20 O 1.34712 * 119.99285 * 359.97438 * 18 17 16 21 21 C 1.38452 * 119.97643 * 179.72005 * 12 11 10 22 22 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 24 24 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 25 25 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 26 26 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 27 27 H 1.08003 * 119.87633 * 359.97438 * 13 12 11 28 28 H 1.08005 * 120.02506 * 179.97438 * 16 14 13 29 29 H 0.96705 * 116.99492 * 180.02562 * 20 18 17 30 30 H 1.07994 * 120.09205 * 0.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4507 -2.6364 0.0021 12 6 6.0677 -3.8474 0.0027 13 6 5.3111 -5.0116 0.0028 14 6 5.9335 -6.2470 0.0039 15 35 4.8936 -7.8264 0.0046 16 6 7.3118 -6.3301 0.0045 17 6 8.0804 -5.1648 0.0034 18 6 9.5554 -5.2494 0.0046 19 8 10.2220 -4.2339 0.0041 20 8 10.1609 -6.4527 0.0073 21 6 7.4503 -3.9192 -0.0020 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 3.6586 -3.1502 -0.8892 26 1 3.6580 -3.1505 0.8908 27 1 4.2327 -4.9524 0.0027 28 1 7.7949 -7.2961 0.0058 29 1 11.1279 -6.4575 0.0083 30 1 8.0396 -3.0142 -0.0057 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700767827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:29 Heat of formation + Delta-G solvation = -128.247351 kcal Electronic energy + Delta-G solvation = -17214.819374 eV Core-core repulsion = 14020.716002 eV Total energy + Delta-G solvation = -3194.103372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.999 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.75705 -40.81114 -38.61131 -37.16488 -35.44568 -33.69394 -32.88744 -31.53655 -30.33027 -27.31863 -25.90976 -23.50965 -23.06618 -21.75879 -19.85677 -19.06816 -18.71620 -17.42430 -17.20649 -17.16790 -16.85506 -16.69965 -16.17185 -15.21529 -14.90933 -14.69745 -14.61309 -14.32229 -13.69080 -13.51459 -13.12224 -12.77324 -12.65851 -12.49986 -12.16416 -12.04451 -11.89383 -11.78411 -11.51433 -11.45498 -11.38073 -10.81098 -10.16714 -9.46886 -8.34353 -6.41106 -0.66609 -0.03721 0.39066 1.31225 1.36919 1.38794 1.50507 1.71577 2.30166 2.33453 2.41040 3.01205 3.62677 3.66698 3.86221 3.90001 4.05543 4.19746 4.23667 4.40664 4.63364 4.79227 4.89049 4.95787 5.06675 5.25716 5.29700 5.49136 5.52716 6.15534 6.24791 6.65348 6.89899 7.24356 8.81198 Molecular weight = 314.00amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.003878 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.146123 B = 7217.784813 C = 9150.482740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.536 4.536 8 H 0.045 0.955 9 C -0.008 4.008 10 C 0.080 3.920 11 O -0.323 6.323 12 C 0.121 3.879 13 C -0.151 4.151 14 C -0.069 4.069 15 Br -0.024 7.024 16 C -0.063 4.063 17 C -0.089 4.089 18 C 0.544 3.456 19 O -0.538 6.538 20 O -0.495 6.495 21 C -0.083 4.083 22 H 0.270 0.730 23 H 0.029 0.971 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.147 0.853 28 H 0.173 0.827 29 H 0.439 0.561 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.495 -18.499 0.013 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.769 3.231 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.173 1.173 7 C -0.574 4.574 8 H 0.063 0.937 9 C -0.045 4.045 10 C 0.006 3.994 11 O -0.237 6.237 12 C 0.075 3.925 13 C -0.171 4.171 14 C -0.148 4.148 15 Br 0.061 6.939 16 C -0.083 4.083 17 C -0.091 4.091 18 C 0.388 3.612 19 O -0.429 6.429 20 O -0.310 6.310 21 C -0.102 4.102 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.190 0.810 29 H 0.302 0.698 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 17.784 -18.537 0.016 25.688 hybrid contribution 0.293 1.160 -0.017 1.196 sum 18.078 -17.377 -0.001 25.075 Atomic orbital electron populations 1.70018 1.08109 1.28474 1.51588 1.25842 0.95553 1.03208 0.93717 0.85725 0.79500 0.78523 0.79369 1.19041 1.20692 1.17297 1.21111 0.90487 0.93941 1.51858 0.93675 1.19457 0.94362 0.92650 0.98058 1.22851 0.75072 1.00012 1.01438 1.86114 1.23383 1.26235 1.87935 1.18866 0.92056 0.84845 0.96780 1.21660 1.01760 0.90934 1.02763 1.21545 0.94679 0.92195 1.06431 1.96780 1.69927 1.29587 1.97565 1.21450 0.90869 0.99512 0.96462 1.18683 0.89991 0.93173 1.07302 1.20384 0.88182 0.81162 0.71426 1.90919 1.66784 1.37883 1.47338 1.84494 1.30671 1.30996 1.84802 1.20623 0.91412 0.98612 0.99590 0.92133 0.95245 0.95346 0.91569 0.91603 0.83529 0.80963 0.69841 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.28 13.96 21.45 0.30 -56.99 16 2 C 0.02 0.86 5.47 84.65 0.46 1.32 16 3 Si 0.95 43.24 27.47 68.60 1.88 45.13 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 7 C -0.54 -29.68 9.66 25.60 0.25 -29.43 16 8 H 0.04 2.69 7.99 -2.91 -0.02 2.67 16 9 C -0.01 -0.36 4.41 29.85 0.13 -0.22 16 10 C 0.08 3.04 4.68 71.98 0.34 3.38 16 11 O -0.32 -11.30 10.13 -92.49 -0.94 -12.24 16 12 C 0.12 3.54 6.68 22.47 0.15 3.69 16 13 C -0.15 -3.95 8.77 22.44 0.20 -3.75 16 14 C -0.07 -1.51 6.21 22.25 0.14 -1.37 16 15 Br -0.02 -0.48 33.69 -20.37 -0.69 -1.16 16 16 C -0.06 -1.20 9.35 22.56 0.21 -0.99 16 17 C -0.09 -1.93 5.87 -20.11 -0.12 -2.05 16 18 C 0.54 10.67 8.27 70.34 0.58 11.25 16 19 O -0.54 -13.95 17.13 19.95 0.34 -13.61 16 20 O -0.50 -5.61 12.68 -56.21 -0.71 -6.33 16 21 C -0.08 -2.16 9.53 22.65 0.22 -1.95 16 22 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 23 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 24 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 25 H 0.07 2.40 7.66 -2.39 -0.02 2.38 16 26 H 0.07 2.39 7.65 -2.39 -0.02 2.37 16 27 H 0.15 3.90 6.28 -2.91 -0.02 3.88 16 28 H 0.17 2.41 7.61 -2.91 -0.02 2.38 16 29 H 0.44 0.83 9.11 -74.05 -0.67 0.15 16 30 H 0.15 3.91 7.65 -2.91 -0.02 3.89 16 Total: -1.00 -66.69 291.74 3.21 -63.49 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 0.46 Total: 1.83 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 2.55 Total: -20.13 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.30 Total: -56.99 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.31 Total: -32.17 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.69 Total: -1.16 kcal Total: -66.69 3.21 -63.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700767827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.758 kcal (2) G-P(sol) polarization free energy of solvation -66.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds