Wall clock time and date at job start Tue Mar 31 2020 10:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47367 * 2 1 4 4 C 1.53007 * 109.47163 * 240.00071 * 2 1 3 5 5 Si 1.86295 * 109.47215 * 119.99993 * 2 1 3 6 6 C 1.86300 * 109.47037 * 300.00214 * 5 2 1 7 7 C 1.86298 * 109.47593 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47225 * 59.99984 * 5 2 1 9 9 C 1.42897 * 114.00462 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47373 * 179.97438 * 9 8 5 11 11 N 1.46500 * 109.47027 * 65.00503 * 10 9 8 12 12 C 1.36940 * 119.99642 * 269.99897 * 11 10 9 13 13 H 1.08000 * 119.99793 * 141.49739 * 12 11 10 14 14 C 1.38809 * 120.00209 * 321.49343 * 12 11 10 15 15 N 1.31617 * 120.00018 * 339.45120 * 14 12 11 16 16 Si 1.86798 * 120.00175 * 159.44705 * 14 12 11 17 17 H 1.48496 * 109.47233 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47200 * 120.00154 * 16 14 12 19 19 H 1.48503 * 109.47261 * 240.00373 * 16 14 12 20 20 C 1.46497 * 120.00373 * 89.99462 * 11 10 9 21 21 C 1.54267 * 110.03572 * 242.54271 * 20 11 10 22 22 C 1.54963 * 104.15967 * 217.13814 * 21 20 11 23 23 C 1.54892 * 102.78087 * 37.88532 * 22 21 20 24 24 C 1.53872 * 110.03099 * 125.32310 * 20 11 10 25 25 H 1.08995 * 109.47066 * 300.00214 * 1 2 3 26 26 H 1.09003 * 109.47213 * 59.99994 * 1 2 3 27 27 H 1.08999 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47296 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46959 * 300.00162 * 3 2 1 30 30 H 1.09005 * 109.46989 * 59.99390 * 3 2 1 31 31 H 1.08999 * 109.46928 * 300.00032 * 4 2 1 32 32 H 1.09000 * 109.47053 * 60.00632 * 4 2 1 33 33 H 1.09004 * 109.46725 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47026 * 179.97438 * 6 5 2 35 35 H 1.08999 * 109.47401 * 299.99678 * 6 5 2 36 36 H 1.08996 * 109.47654 * 59.99877 * 6 5 2 37 37 H 1.09001 * 109.47089 * 300.00546 * 7 5 2 38 38 H 1.09009 * 109.47051 * 59.99773 * 7 5 2 39 39 H 1.08996 * 109.47234 * 179.97438 * 7 5 2 40 40 H 1.09003 * 109.46750 * 59.99822 * 9 8 5 41 41 H 1.09001 * 109.47218 * 300.00175 * 9 8 5 42 42 H 1.08996 * 109.47320 * 305.00128 * 10 9 8 43 43 H 1.09000 * 109.47376 * 185.00016 * 10 9 8 44 44 H 0.97003 * 120.00451 * 175.02820 * 15 14 12 45 45 H 1.09003 * 110.01696 * 3.93859 * 20 11 10 46 46 H 1.09003 * 110.48332 * 335.78383 * 21 20 11 47 47 H 1.08991 * 110.48620 * 98.42654 * 21 20 11 48 48 H 1.09006 * 110.71762 * 279.57391 * 22 21 20 49 49 H 1.08999 * 110.92342 * 156.29391 * 22 21 20 50 50 H 1.08995 * 110.48932 * 203.40777 * 23 22 21 51 51 H 1.08999 * 110.59717 * 80.81447 * 23 22 21 52 52 H 1.09001 * 110.03513 * 238.57106 * 24 20 11 53 53 H 1.09006 * 110.03701 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5299 0.0000 3.0422 7 6 4.0139 -0.8776 1.5216 8 8 1.6073 -2.4159 1.5211 9 6 2.0285 -3.1813 2.6519 10 6 1.4626 -4.5990 2.5476 11 7 2.0454 -5.2730 1.3847 12 6 1.4320 -5.1846 0.1636 13 1 2.0259 -5.0883 -0.7333 14 6 0.0469 -5.2189 0.0785 15 7 -0.6606 -5.7282 1.0645 16 14 -0.8129 -4.5419 -1.4354 17 1 0.2003 -4.0302 -2.3929 18 1 -1.6022 -5.6216 -2.0807 19 1 -1.7203 -3.4361 -1.0364 20 6 3.2844 -6.0415 1.5281 21 6 4.3972 -5.4166 0.6616 22 6 5.1876 -6.6356 0.1226 23 6 4.0713 -7.6740 -0.1511 24 6 3.0774 -7.4762 1.0120 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 1.8929 -0.5141 3.9322 35 1 1.8932 1.0277 3.0423 36 1 0.4400 0.0000 3.0423 37 1 4.3777 -1.3911 0.6316 38 1 4.3770 0.1503 1.5218 39 1 4.3772 -1.3910 2.4118 40 1 1.6636 -2.7112 3.5651 41 1 3.1173 -3.2252 2.6759 42 1 0.3796 -4.5506 2.4345 43 1 1.7090 -5.1561 3.4515 44 1 -1.6294 -5.6872 1.0381 45 1 3.5921 -6.0616 2.5736 46 1 3.9654 -4.8478 -0.1619 47 1 5.0418 -4.7811 1.2686 48 1 5.8842 -7.0066 0.8745 49 1 5.7137 -6.3824 -0.7978 50 1 4.4788 -8.6848 -0.1371 51 1 3.5859 -7.4724 -1.1060 52 1 3.2855 -8.1926 1.8068 53 1 2.0552 -7.6007 0.6544 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808729301.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:37 Heat of formation + Delta-G solvation = -85.687296 kcal Electronic energy + Delta-G solvation = -26805.082657 eV Core-core repulsion = 23526.633931 eV Total energy + Delta-G solvation = -3278.448726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.218 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -37.75006 -36.16512 -35.64413 -33.75273 -30.89584 -28.46142 -28.01289 -27.89446 -27.73108 -26.74962 -26.20265 -26.17813 -23.42515 -20.78062 -19.87174 -19.21976 -18.89611 -16.20916 -16.01784 -15.13562 -14.79106 -14.68698 -14.27972 -14.02415 -13.73398 -13.61361 -13.43620 -12.92007 -12.73716 -12.61136 -12.47332 -12.30874 -12.23403 -12.02761 -11.91100 -11.80007 -11.73590 -11.25475 -11.07221 -10.90118 -10.81504 -10.69548 -10.60127 -10.37325 -10.36698 -10.28036 -10.19805 -10.09166 -10.01978 -9.72550 -9.61533 -9.47164 -9.27797 -8.81346 -8.75721 -8.22304 -6.36371 -5.53611 -3.14113 2.96940 3.09728 3.40112 3.49958 3.58460 3.60910 3.94347 4.68132 5.26594 5.30676 5.39599 5.48040 5.51172 5.60035 5.63811 5.78865 5.80740 5.82799 5.87382 5.89275 5.91810 5.98359 6.07555 6.12631 6.17545 6.22034 6.24719 6.30905 6.31279 6.32774 6.37758 6.42822 6.48123 6.58703 6.60954 6.62499 6.65315 6.66810 6.70306 6.75401 6.77214 6.80418 6.95500 7.11186 7.25722 7.46914 7.50720 7.85136 8.04088 8.74856 9.40632 10.04669 10.60682 11.43670 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.006021 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.135252 B = 4649.522094 C = 5494.446434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.372 4.372 3 C -0.132 4.132 4 C -0.132 4.132 5 Si 1.268 2.732 6 C -0.508 4.508 7 C -0.503 4.503 8 O -0.583 6.583 9 C 0.074 3.926 10 C 0.141 3.859 11 N -0.569 5.569 12 C -0.216 4.216 13 H 0.055 0.945 14 C 0.018 3.982 15 N -0.893 5.893 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.289 1.289 20 C 0.169 3.831 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.131 4.131 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.032 0.968 42 H 0.103 0.897 43 H 0.033 0.967 44 H 0.248 0.752 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.043 0.957 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.045 0.955 51 H 0.061 0.939 52 H 0.038 0.962 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 8.525 2.056 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.415 4.415 3 C -0.189 4.189 4 C -0.189 4.189 5 Si 1.396 2.604 6 C -0.609 4.609 7 C -0.604 4.604 8 O -0.543 6.543 9 C -0.004 4.004 10 C 0.014 3.986 11 N -0.288 5.288 12 C -0.346 4.346 13 H 0.073 0.927 14 C -0.180 4.180 15 N -0.537 5.537 16 Si 0.713 3.287 17 H -0.202 1.202 18 H -0.226 1.226 19 H -0.215 1.215 20 C 0.062 3.938 21 C -0.175 4.175 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.170 4.170 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.121 0.879 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.080 0.920 52 H 0.057 0.943 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.120 8.259 1.914 11.071 hybrid contribution -0.226 1.058 -0.628 1.251 sum 6.894 9.316 1.286 11.661 Atomic orbital electron populations 1.21484 0.94139 1.02563 1.00747 1.25733 1.00444 1.01821 1.13506 1.21536 1.00394 0.95641 1.01312 1.21487 1.00193 1.01264 0.95998 0.77105 0.63096 0.56003 0.64176 1.27063 1.06723 1.08442 1.18651 1.26996 1.25938 1.03184 1.04265 1.85537 1.77707 1.43382 1.47666 1.22831 0.96805 0.96184 0.84551 1.21096 1.02520 0.86691 0.88263 1.43791 1.24110 1.54303 1.06609 1.18700 0.88464 1.42323 0.85087 0.92724 1.24928 0.97404 0.98998 0.96681 1.70041 1.05021 1.45008 1.33633 0.86571 0.79787 0.78571 0.83808 1.20209 1.22587 1.21543 1.21052 0.87565 0.89941 0.95266 1.22875 0.97242 0.96666 1.00706 1.22444 0.97206 0.97108 0.99375 1.22250 0.96429 0.97028 0.99803 1.22552 1.00959 0.97394 0.96103 0.93158 0.93537 0.91538 0.92901 0.93171 0.92996 0.91068 0.93686 0.93094 0.91778 0.91842 0.91231 0.91005 0.92048 0.91858 0.95514 0.94980 0.87931 0.94853 0.94188 0.93747 0.90639 0.93804 0.92880 0.93108 0.93624 0.92015 0.94315 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 7.85 37.16 0.29 -1.72 16 2 C -0.37 -5.37 0.53 -90.62 -0.05 -5.42 16 3 C -0.13 -1.57 7.85 37.16 0.29 -1.28 16 4 C -0.13 -2.05 7.85 37.16 0.29 -1.76 16 5 Si 1.27 18.71 8.45 -169.99 -1.44 17.27 16 6 C -0.51 -6.84 8.50 101.05 0.86 -5.99 16 7 C -0.50 -6.99 8.50 101.05 0.86 -6.13 16 8 O -0.58 -11.32 8.03 -35.23 -0.28 -11.60 16 9 C 0.07 1.38 5.47 37.16 0.20 1.59 16 10 C 0.14 3.12 5.71 -4.04 -0.02 3.09 16 11 N -0.57 -13.14 2.36 -164.40 -0.39 -13.53 16 12 C -0.22 -5.54 7.26 -15.06 -0.11 -5.65 16 13 H 0.06 1.45 6.94 -52.49 -0.36 1.09 16 14 C 0.02 0.50 4.97 -17.43 -0.09 0.41 16 15 N -0.89 -25.02 11.48 55.49 0.64 -24.38 16 16 Si 0.88 21.79 29.60 -169.99 -5.03 16.76 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 C 0.17 3.42 3.42 -66.81 -0.23 3.19 16 21 C -0.14 -2.48 6.43 -25.03 -0.16 -2.64 16 22 C -0.12 -1.97 6.91 -24.70 -0.17 -2.14 16 23 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 24 C -0.13 -2.59 6.25 -25.61 -0.16 -2.75 16 25 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.18 7.97 -51.93 -0.41 0.77 16 28 H 0.05 0.58 7.79 -51.93 -0.40 0.17 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.56 7.79 -51.93 -0.40 0.15 16 31 H 0.07 1.30 7.97 -51.93 -0.41 0.88 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 34 H 0.06 0.84 7.48 -51.93 -0.39 0.45 16 35 H 0.06 0.75 7.79 -51.93 -0.40 0.34 16 36 H 0.07 0.96 7.79 -51.93 -0.40 0.55 16 37 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 38 H 0.06 0.74 7.79 -51.92 -0.40 0.34 16 39 H 0.06 0.86 7.48 -51.93 -0.39 0.48 16 40 H 0.03 0.44 7.21 -51.93 -0.37 0.07 16 41 H 0.03 0.56 7.22 -51.93 -0.37 0.19 16 42 H 0.10 2.62 5.55 -51.93 -0.29 2.33 16 43 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 44 H 0.25 6.84 8.32 -40.82 -0.34 6.50 16 45 H 0.04 0.85 7.81 -51.93 -0.41 0.45 16 46 H 0.07 1.55 6.64 -51.93 -0.34 1.20 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 53 H 0.09 2.06 7.17 -51.93 -0.37 1.69 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -27.48 406.80 -9.45 -36.93 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -10.72 Total: 1.81 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 1.64 Total: -29.39 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.25 Total: -37.91 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.28 Total: -11.60 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: -6.47 Total: 34.03 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -27.48 -9.45 -36.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808729301.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.760 kcal (2) G-P(sol) polarization free energy of solvation -27.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds