Wall clock time and date at job start Tue Mar 31 2020 10:59:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53005 * 109.47367 * 2 1
4 4 C 1.53007 * 109.47163 * 240.00071 * 2 1 3
5 5 Si 1.86295 * 109.47215 * 119.99993 * 2 1 3
6 6 C 1.86300 * 109.47037 * 300.00214 * 5 2 1
7 7 C 1.86298 * 109.47593 * 180.02562 * 5 2 1
8 8 O 1.63098 * 109.47225 * 59.99984 * 5 2 1
9 9 C 1.42897 * 114.00462 * 180.02562 * 8 5 2
10 10 C 1.52999 * 109.47373 * 179.97438 * 9 8 5
11 11 N 1.46500 * 109.47027 * 65.00503 * 10 9 8
12 12 C 1.36940 * 119.99642 * 269.99897 * 11 10 9
13 13 H 1.08000 * 119.99793 * 141.49739 * 12 11 10
14 14 C 1.38809 * 120.00209 * 321.49343 * 12 11 10
15 15 N 1.31617 * 120.00018 * 339.45120 * 14 12 11
16 16 Si 1.86798 * 120.00175 * 159.44705 * 14 12 11
17 17 H 1.48496 * 109.47233 * 0.02562 * 16 14 12
18 18 H 1.48500 * 109.47200 * 120.00154 * 16 14 12
19 19 H 1.48503 * 109.47261 * 240.00373 * 16 14 12
20 20 C 1.46497 * 120.00373 * 89.99462 * 11 10 9
21 21 C 1.54267 * 110.03572 * 242.54271 * 20 11 10
22 22 C 1.54963 * 104.15967 * 217.13814 * 21 20 11
23 23 C 1.54892 * 102.78087 * 37.88532 * 22 21 20
24 24 C 1.53872 * 110.03099 * 125.32310 * 20 11 10
25 25 H 1.08995 * 109.47066 * 300.00214 * 1 2 3
26 26 H 1.09003 * 109.47213 * 59.99994 * 1 2 3
27 27 H 1.08999 * 109.47024 * 179.97438 * 1 2 3
28 28 H 1.08993 * 109.47296 * 179.97438 * 3 2 1
29 29 H 1.09003 * 109.46959 * 300.00162 * 3 2 1
30 30 H 1.09005 * 109.46989 * 59.99390 * 3 2 1
31 31 H 1.08999 * 109.46928 * 300.00032 * 4 2 1
32 32 H 1.09000 * 109.47053 * 60.00632 * 4 2 1
33 33 H 1.09004 * 109.46725 * 179.97438 * 4 2 1
34 34 H 1.09003 * 109.47026 * 179.97438 * 6 5 2
35 35 H 1.08999 * 109.47401 * 299.99678 * 6 5 2
36 36 H 1.08996 * 109.47654 * 59.99877 * 6 5 2
37 37 H 1.09001 * 109.47089 * 300.00546 * 7 5 2
38 38 H 1.09009 * 109.47051 * 59.99773 * 7 5 2
39 39 H 1.08996 * 109.47234 * 179.97438 * 7 5 2
40 40 H 1.09003 * 109.46750 * 59.99822 * 9 8 5
41 41 H 1.09001 * 109.47218 * 300.00175 * 9 8 5
42 42 H 1.08996 * 109.47320 * 305.00128 * 10 9 8
43 43 H 1.09000 * 109.47376 * 185.00016 * 10 9 8
44 44 H 0.97003 * 120.00451 * 175.02820 * 15 14 12
45 45 H 1.09003 * 110.01696 * 3.93859 * 20 11 10
46 46 H 1.09003 * 110.48332 * 335.78383 * 21 20 11
47 47 H 1.08991 * 110.48620 * 98.42654 * 21 20 11
48 48 H 1.09006 * 110.71762 * 279.57391 * 22 21 20
49 49 H 1.08999 * 110.92342 * 156.29391 * 22 21 20
50 50 H 1.08995 * 110.48932 * 203.40777 * 23 22 21
51 51 H 1.08999 * 110.59717 * 80.81447 * 23 22 21
52 52 H 1.09001 * 110.03513 * 238.57106 * 24 20 11
53 53 H 1.09006 * 110.03701 * 0.02562 * 24 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2493
5 14 2.1510 -0.8782 1.5211
6 6 1.5299 0.0000 3.0422
7 6 4.0139 -0.8776 1.5216
8 8 1.6073 -2.4159 1.5211
9 6 2.0285 -3.1813 2.6519
10 6 1.4626 -4.5990 2.5476
11 7 2.0454 -5.2730 1.3847
12 6 1.4320 -5.1846 0.1636
13 1 2.0259 -5.0883 -0.7333
14 6 0.0469 -5.2189 0.0785
15 7 -0.6606 -5.7282 1.0645
16 14 -0.8129 -4.5419 -1.4354
17 1 0.2003 -4.0302 -2.3929
18 1 -1.6022 -5.6216 -2.0807
19 1 -1.7203 -3.4361 -1.0364
20 6 3.2844 -6.0415 1.5281
21 6 4.3972 -5.4166 0.6616
22 6 5.1876 -6.6356 0.1226
23 6 4.0713 -7.6740 -0.1511
24 6 3.0774 -7.4762 1.0120
25 1 -0.3633 0.5138 0.8899
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 3.1300 1.4425 0.0005
29 1 1.6767 1.9564 -0.8900
30 1 1.6766 1.9564 0.8900
31 1 1.6766 -1.7489 -1.2493
32 1 1.6767 -0.2074 -2.1393
33 1 3.1300 -0.7208 -1.2495
34 1 1.8929 -0.5141 3.9322
35 1 1.8932 1.0277 3.0423
36 1 0.4400 0.0000 3.0423
37 1 4.3777 -1.3911 0.6316
38 1 4.3770 0.1503 1.5218
39 1 4.3772 -1.3910 2.4118
40 1 1.6636 -2.7112 3.5651
41 1 3.1173 -3.2252 2.6759
42 1 0.3796 -4.5506 2.4345
43 1 1.7090 -5.1561 3.4515
44 1 -1.6294 -5.6872 1.0381
45 1 3.5921 -6.0616 2.5736
46 1 3.9654 -4.8478 -0.1619
47 1 5.0418 -4.7811 1.2686
48 1 5.8842 -7.0066 0.8745
49 1 5.7137 -6.3824 -0.7978
50 1 4.4788 -8.6848 -0.1371
51 1 3.5859 -7.4724 -1.1060
52 1 3.2855 -8.1926 1.8068
53 1 2.0552 -7.6007 0.6544
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000808729301.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:59:36
Heat of formation + Delta-G solvation = -96.096254 kcal
Electronic energy + Delta-G solvation = -26805.534023 eV
Core-core repulsion = 23526.633931 eV
Total energy + Delta-G solvation = -3278.900093 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 313.218 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-39.35840 -37.59965 -36.78950 -35.49509 -32.82482 -29.91799 -29.24803 -29.23077
-29.01400 -27.96677 -27.77592 -27.36107 -25.21272 -22.45985 -21.27888 -20.62817
-20.35682 -18.06855 -17.45050 -16.74102 -16.51739 -15.97444 -15.78335 -15.68347
-15.04131 -14.83182 -14.76248 -14.47257 -14.26113 -13.97878 -13.85947 -13.48205
-13.45122 -13.22574 -13.11787 -12.96741 -12.93390 -12.86643 -12.77184 -12.60935
-12.39081 -12.22327 -12.06321 -11.81581 -11.77818 -11.71026 -11.66563 -11.62505
-11.58839 -11.21958 -11.14999 -11.08404 -10.85075 -10.27558 -10.01870 -9.94500
-8.32267 -7.55662 -5.18943 1.44295 1.49980 1.56023 1.81510 1.92041
2.29727 2.64898 2.77200 3.49006 3.76252 4.06242 4.11501 4.16253
4.16571 4.34971 4.51110 4.56322 4.73319 4.76213 4.79942 4.81059
4.83022 4.84189 4.84946 4.86055 4.87787 4.93883 4.98569 5.00699
5.01291 5.07282 5.07648 5.09376 5.11718 5.23566 5.29166 5.30943
5.34520 5.40893 5.41936 5.52401 5.61248 5.65122 5.67113 5.72261
5.77200 5.88044 5.99968 6.12124 6.71269 7.42245 8.13233 8.62180
9.35290
Molecular weight = 313.22amu
Principal moments of inertia in cm(-1)
A = 0.012282 B = 0.006021 C = 0.005095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2279.135252 B = 4649.522094 C = 5494.446434
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.374 4.374
3 C -0.131 4.131
4 C -0.132 4.132
5 Si 1.260 2.740
6 C -0.499 4.499
7 C -0.494 4.494
8 O -0.625 6.625
9 C 0.081 3.919
10 C 0.135 3.865
11 N -0.580 5.580
12 C -0.191 4.191
13 H 0.041 0.959
14 C -0.025 4.025
15 N -0.919 5.919
16 Si 0.918 3.082
17 H -0.273 1.273
18 H -0.304 1.304
19 H -0.295 1.295
20 C 0.160 3.840
21 C -0.129 4.129
22 C -0.112 4.112
23 C -0.114 4.114
24 C -0.129 4.129
25 H 0.066 0.934
26 H 0.052 0.948
27 H 0.028 0.972
28 H 0.067 0.933
29 H 0.054 0.946
30 H 0.067 0.933
31 H 0.031 0.969
32 H 0.051 0.949
33 H 0.064 0.936
34 H 0.068 0.932
35 H 0.085 0.915
36 H 0.062 0.938
37 H 0.060 0.940
38 H 0.084 0.916
39 H 0.066 0.934
40 H 0.050 0.950
41 H 0.046 0.954
42 H 0.066 0.934
43 H 0.042 0.958
44 H 0.240 0.760
45 H 0.059 0.941
46 H 0.046 0.954
47 H 0.061 0.939
48 H 0.078 0.922
49 H 0.066 0.934
50 H 0.071 0.929
51 H 0.042 0.958
52 H 0.054 0.946
53 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.350 10.264 2.883 14.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.417 4.417
3 C -0.188 4.188
4 C -0.189 4.189
5 Si 1.392 2.608
6 C -0.602 4.602
7 C -0.597 4.597
8 O -0.585 6.585
9 C 0.003 3.997
10 C 0.009 3.991
11 N -0.299 5.299
12 C -0.322 4.322
13 H 0.059 0.941
14 C -0.220 4.220
15 N -0.567 5.567
16 Si 0.750 3.250
17 H -0.198 1.198
18 H -0.232 1.232
19 H -0.223 1.223
20 C 0.053 3.947
21 C -0.168 4.168
22 C -0.150 4.150
23 C -0.152 4.152
24 C -0.168 4.168
25 H 0.085 0.915
26 H 0.071 0.929
27 H 0.047 0.953
28 H 0.086 0.914
29 H 0.073 0.927
30 H 0.086 0.914
31 H 0.051 0.949
32 H 0.070 0.930
33 H 0.082 0.918
34 H 0.087 0.913
35 H 0.104 0.896
36 H 0.081 0.919
37 H 0.079 0.921
38 H 0.103 0.897
39 H 0.085 0.915
40 H 0.068 0.932
41 H 0.064 0.936
42 H 0.084 0.916
43 H 0.060 0.940
44 H 0.050 0.950
45 H 0.077 0.923
46 H 0.065 0.935
47 H 0.080 0.920
48 H 0.097 0.903
49 H 0.084 0.916
50 H 0.089 0.911
51 H 0.061 0.939
52 H 0.073 0.927
53 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 10.024 9.994 2.718 14.414
hybrid contribution -1.087 0.496 -0.874 1.480
sum 8.937 10.490 1.844 13.904
Atomic orbital electron populations
1.21485 0.95180 1.00419 1.01918 1.25748 0.99583 1.03717 1.12649
1.21539 1.01343 0.93477 1.02398 1.21470 1.01011 0.99195 0.97229
0.77264 0.64030 0.54418 0.65116 1.26882 1.06222 1.09637 1.17449
1.26833 1.24316 1.04626 1.03904 1.85481 1.78901 1.45850 1.48244
1.22615 0.97296 0.94217 0.85538 1.21071 1.00570 0.89321 0.88179
1.43923 1.24858 1.55218 1.05948 1.18635 0.88191 1.39585 0.85834
0.94100 1.25289 0.98126 1.00558 0.98071 1.70137 1.04453 1.47122
1.34942 0.85972 0.79009 0.77661 0.82377 1.19814 1.23235 1.22265
1.21299 0.86805 0.89899 0.96662 1.22746 0.96916 0.97587 0.99583
1.22408 0.96728 0.95085 1.00754 1.22214 0.96219 0.99133 0.97611
1.22470 0.99001 0.97767 0.97587 0.91507 0.92874 0.95286 0.91432
0.92730 0.91373 0.94943 0.93011 0.91753 0.91272 0.89571 0.91908
0.92100 0.89740 0.91499 0.93162 0.93572 0.91641 0.93965 0.95005
0.92280 0.93498 0.91996 0.90297 0.91573 0.91056 0.93921 0.92720
0.94183
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.03 7.85 71.98 0.56 -3.47 16
2 C -0.37 -10.35 0.53 -10.79 -0.01 -10.36 16
3 C -0.13 -2.72 7.85 71.98 0.56 -2.15 16
4 C -0.13 -4.08 7.85 71.98 0.56 -3.51 16
5 Si 1.26 35.23 8.45 68.60 0.58 35.81 16
6 C -0.50 -12.03 8.50 113.37 0.96 -11.07 16
7 C -0.49 -12.28 8.50 113.37 0.96 -11.32 16
8 O -0.63 -24.51 8.03 -148.98 -1.20 -25.70 16
9 C 0.08 2.98 5.47 71.98 0.39 3.37 16
10 C 0.13 6.08 5.71 86.38 0.49 6.57 16
11 N -0.58 -27.33 2.36 -674.03 -1.59 -28.92 16
12 C -0.19 -10.21 7.26 84.03 0.61 -9.60 16
13 H 0.04 2.28 6.94 -2.91 -0.02 2.26 16
14 C -0.02 -1.41 4.97 84.86 0.42 -0.98 16
15 N -0.92 -54.20 11.48 21.65 0.25 -53.95 16
16 Si 0.92 47.00 29.60 68.60 2.03 49.03 16
17 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16
18 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16
19 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16
20 C 0.16 6.35 3.42 45.72 0.16 6.51 16
21 C -0.13 -4.50 6.43 31.70 0.20 -4.30 16
22 C -0.11 -3.24 6.91 31.91 0.22 -3.02 16
23 C -0.11 -3.77 6.83 31.67 0.22 -3.55 16
24 C -0.13 -5.08 6.25 31.32 0.20 -4.88 16
25 H 0.07 1.75 7.79 -2.39 -0.02 1.73 16
26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
27 H 0.03 1.07 7.97 -2.39 -0.02 1.05 16
28 H 0.07 1.21 7.79 -2.39 -0.02 1.19 16
29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.07 1.20 7.79 -2.38 -0.02 1.19 16
31 H 0.03 1.22 7.97 -2.39 -0.02 1.21 16
32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16
33 H 0.06 1.76 7.79 -2.38 -0.02 1.74 16
34 H 0.07 1.60 7.48 -2.39 -0.02 1.58 16
35 H 0.09 1.68 7.79 -2.39 -0.02 1.66 16
36 H 0.06 1.60 7.79 -2.39 -0.02 1.58 16
37 H 0.06 1.65 7.79 -2.39 -0.02 1.63 16
38 H 0.08 1.69 7.79 -2.38 -0.02 1.68 16
39 H 0.07 1.61 7.48 -2.39 -0.02 1.59 16
40 H 0.05 1.59 7.21 -2.39 -0.02 1.57 16
41 H 0.05 1.55 7.22 -2.39 -0.02 1.53 16
42 H 0.07 3.50 5.55 -2.39 -0.01 3.49 16
43 H 0.04 1.76 7.90 -2.39 -0.02 1.74 16
44 H 0.24 14.01 8.32 -92.71 -0.77 13.24 16
45 H 0.06 2.16 7.81 -2.39 -0.02 2.15 16
46 H 0.05 1.90 6.64 -2.39 -0.02 1.89 16
47 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16
48 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16
49 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
50 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16
51 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
52 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
53 H 0.04 1.95 7.17 -2.38 -0.02 1.93 16
Total: -1.00 -62.75 406.80 7.41 -55.33
By element:
Atomic # 1 Polarization: 19.36 SS G_CDS: 0.81 Total: 20.18 kcal
Atomic # 6 Polarization: -58.29 SS G_CDS: 6.53 Total: -51.77 kcal
Atomic # 7 Polarization: -81.54 SS G_CDS: -1.34 Total: -82.88 kcal
Atomic # 8 Polarization: -24.51 SS G_CDS: -1.20 Total: -25.70 kcal
Atomic # 14 Polarization: 82.23 SS G_CDS: 2.61 Total: 84.84 kcal
Total: -62.75 7.41 -55.33 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000808729301.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.762 kcal
(2) G-P(sol) polarization free energy of solvation -62.747 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.509 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.413 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.335 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds