Wall clock time and date at job start Tue Mar 31 2020 10:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47367 * 2 1 4 4 C 1.53007 * 109.47163 * 240.00071 * 2 1 3 5 5 Si 1.86295 * 109.47215 * 119.99993 * 2 1 3 6 6 C 1.86300 * 109.47037 * 300.00214 * 5 2 1 7 7 C 1.86298 * 109.47593 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47225 * 59.99984 * 5 2 1 9 9 C 1.42897 * 114.00462 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47373 * 179.97438 * 9 8 5 11 11 N 1.46500 * 109.47027 * 65.00503 * 10 9 8 12 12 C 1.36940 * 119.99642 * 269.99897 * 11 10 9 13 13 H 1.08000 * 119.99793 * 141.49739 * 12 11 10 14 14 C 1.38809 * 120.00209 * 321.49343 * 12 11 10 15 15 N 1.31617 * 120.00018 * 339.45120 * 14 12 11 16 16 Si 1.86798 * 120.00175 * 159.44705 * 14 12 11 17 17 H 1.48496 * 109.47233 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47200 * 120.00154 * 16 14 12 19 19 H 1.48503 * 109.47261 * 240.00373 * 16 14 12 20 20 C 1.46497 * 120.00373 * 89.99462 * 11 10 9 21 21 C 1.54267 * 110.03572 * 242.54271 * 20 11 10 22 22 C 1.54963 * 104.15967 * 217.13814 * 21 20 11 23 23 C 1.54892 * 102.78087 * 37.88532 * 22 21 20 24 24 C 1.53872 * 110.03099 * 125.32310 * 20 11 10 25 25 H 1.08995 * 109.47066 * 300.00214 * 1 2 3 26 26 H 1.09003 * 109.47213 * 59.99994 * 1 2 3 27 27 H 1.08999 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47296 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46959 * 300.00162 * 3 2 1 30 30 H 1.09005 * 109.46989 * 59.99390 * 3 2 1 31 31 H 1.08999 * 109.46928 * 300.00032 * 4 2 1 32 32 H 1.09000 * 109.47053 * 60.00632 * 4 2 1 33 33 H 1.09004 * 109.46725 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47026 * 179.97438 * 6 5 2 35 35 H 1.08999 * 109.47401 * 299.99678 * 6 5 2 36 36 H 1.08996 * 109.47654 * 59.99877 * 6 5 2 37 37 H 1.09001 * 109.47089 * 300.00546 * 7 5 2 38 38 H 1.09009 * 109.47051 * 59.99773 * 7 5 2 39 39 H 1.08996 * 109.47234 * 179.97438 * 7 5 2 40 40 H 1.09003 * 109.46750 * 59.99822 * 9 8 5 41 41 H 1.09001 * 109.47218 * 300.00175 * 9 8 5 42 42 H 1.08996 * 109.47320 * 305.00128 * 10 9 8 43 43 H 1.09000 * 109.47376 * 185.00016 * 10 9 8 44 44 H 0.97003 * 120.00451 * 175.02820 * 15 14 12 45 45 H 1.09003 * 110.01696 * 3.93859 * 20 11 10 46 46 H 1.09003 * 110.48332 * 335.78383 * 21 20 11 47 47 H 1.08991 * 110.48620 * 98.42654 * 21 20 11 48 48 H 1.09006 * 110.71762 * 279.57391 * 22 21 20 49 49 H 1.08999 * 110.92342 * 156.29391 * 22 21 20 50 50 H 1.08995 * 110.48932 * 203.40777 * 23 22 21 51 51 H 1.08999 * 110.59717 * 80.81447 * 23 22 21 52 52 H 1.09001 * 110.03513 * 238.57106 * 24 20 11 53 53 H 1.09006 * 110.03701 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5299 0.0000 3.0422 7 6 4.0139 -0.8776 1.5216 8 8 1.6073 -2.4159 1.5211 9 6 2.0285 -3.1813 2.6519 10 6 1.4626 -4.5990 2.5476 11 7 2.0454 -5.2730 1.3847 12 6 1.4320 -5.1846 0.1636 13 1 2.0259 -5.0883 -0.7333 14 6 0.0469 -5.2189 0.0785 15 7 -0.6606 -5.7282 1.0645 16 14 -0.8129 -4.5419 -1.4354 17 1 0.2003 -4.0302 -2.3929 18 1 -1.6022 -5.6216 -2.0807 19 1 -1.7203 -3.4361 -1.0364 20 6 3.2844 -6.0415 1.5281 21 6 4.3972 -5.4166 0.6616 22 6 5.1876 -6.6356 0.1226 23 6 4.0713 -7.6740 -0.1511 24 6 3.0774 -7.4762 1.0120 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 1.8929 -0.5141 3.9322 35 1 1.8932 1.0277 3.0423 36 1 0.4400 0.0000 3.0423 37 1 4.3777 -1.3911 0.6316 38 1 4.3770 0.1503 1.5218 39 1 4.3772 -1.3910 2.4118 40 1 1.6636 -2.7112 3.5651 41 1 3.1173 -3.2252 2.6759 42 1 0.3796 -4.5506 2.4345 43 1 1.7090 -5.1561 3.4515 44 1 -1.6294 -5.6872 1.0381 45 1 3.5921 -6.0616 2.5736 46 1 3.9654 -4.8478 -0.1619 47 1 5.0418 -4.7811 1.2686 48 1 5.8842 -7.0066 0.8745 49 1 5.7137 -6.3824 -0.7978 50 1 4.4788 -8.6848 -0.1371 51 1 3.5859 -7.4724 -1.1060 52 1 3.2855 -8.1926 1.8068 53 1 2.0552 -7.6007 0.6544 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808729301.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:36 Heat of formation + Delta-G solvation = -96.096254 kcal Electronic energy + Delta-G solvation = -26805.534023 eV Core-core repulsion = 23526.633931 eV Total energy + Delta-G solvation = -3278.900093 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.218 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.35840 -37.59965 -36.78950 -35.49509 -32.82482 -29.91799 -29.24803 -29.23077 -29.01400 -27.96677 -27.77592 -27.36107 -25.21272 -22.45985 -21.27888 -20.62817 -20.35682 -18.06855 -17.45050 -16.74102 -16.51739 -15.97444 -15.78335 -15.68347 -15.04131 -14.83182 -14.76248 -14.47257 -14.26113 -13.97878 -13.85947 -13.48205 -13.45122 -13.22574 -13.11787 -12.96741 -12.93390 -12.86643 -12.77184 -12.60935 -12.39081 -12.22327 -12.06321 -11.81581 -11.77818 -11.71026 -11.66563 -11.62505 -11.58839 -11.21958 -11.14999 -11.08404 -10.85075 -10.27558 -10.01870 -9.94500 -8.32267 -7.55662 -5.18943 1.44295 1.49980 1.56023 1.81510 1.92041 2.29727 2.64898 2.77200 3.49006 3.76252 4.06242 4.11501 4.16253 4.16571 4.34971 4.51110 4.56322 4.73319 4.76213 4.79942 4.81059 4.83022 4.84189 4.84946 4.86055 4.87787 4.93883 4.98569 5.00699 5.01291 5.07282 5.07648 5.09376 5.11718 5.23566 5.29166 5.30943 5.34520 5.40893 5.41936 5.52401 5.61248 5.65122 5.67113 5.72261 5.77200 5.88044 5.99968 6.12124 6.71269 7.42245 8.13233 8.62180 9.35290 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.006021 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.135252 B = 4649.522094 C = 5494.446434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.374 4.374 3 C -0.131 4.131 4 C -0.132 4.132 5 Si 1.260 2.740 6 C -0.499 4.499 7 C -0.494 4.494 8 O -0.625 6.625 9 C 0.081 3.919 10 C 0.135 3.865 11 N -0.580 5.580 12 C -0.191 4.191 13 H 0.041 0.959 14 C -0.025 4.025 15 N -0.919 5.919 16 Si 0.918 3.082 17 H -0.273 1.273 18 H -0.304 1.304 19 H -0.295 1.295 20 C 0.160 3.840 21 C -0.129 4.129 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.129 4.129 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.240 0.760 45 H 0.059 0.941 46 H 0.046 0.954 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.042 0.958 52 H 0.054 0.946 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.350 10.264 2.883 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.417 4.417 3 C -0.188 4.188 4 C -0.189 4.189 5 Si 1.392 2.608 6 C -0.602 4.602 7 C -0.597 4.597 8 O -0.585 6.585 9 C 0.003 3.997 10 C 0.009 3.991 11 N -0.299 5.299 12 C -0.322 4.322 13 H 0.059 0.941 14 C -0.220 4.220 15 N -0.567 5.567 16 Si 0.750 3.250 17 H -0.198 1.198 18 H -0.232 1.232 19 H -0.223 1.223 20 C 0.053 3.947 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.168 4.168 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.097 0.903 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.061 0.939 52 H 0.073 0.927 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.024 9.994 2.718 14.414 hybrid contribution -1.087 0.496 -0.874 1.480 sum 8.937 10.490 1.844 13.904 Atomic orbital electron populations 1.21485 0.95180 1.00419 1.01918 1.25748 0.99583 1.03717 1.12649 1.21539 1.01343 0.93477 1.02398 1.21470 1.01011 0.99195 0.97229 0.77264 0.64030 0.54418 0.65116 1.26882 1.06222 1.09637 1.17449 1.26833 1.24316 1.04626 1.03904 1.85481 1.78901 1.45850 1.48244 1.22615 0.97296 0.94217 0.85538 1.21071 1.00570 0.89321 0.88179 1.43923 1.24858 1.55218 1.05948 1.18635 0.88191 1.39585 0.85834 0.94100 1.25289 0.98126 1.00558 0.98071 1.70137 1.04453 1.47122 1.34942 0.85972 0.79009 0.77661 0.82377 1.19814 1.23235 1.22265 1.21299 0.86805 0.89899 0.96662 1.22746 0.96916 0.97587 0.99583 1.22408 0.96728 0.95085 1.00754 1.22214 0.96219 0.99133 0.97611 1.22470 0.99001 0.97767 0.97587 0.91507 0.92874 0.95286 0.91432 0.92730 0.91373 0.94943 0.93011 0.91753 0.91272 0.89571 0.91908 0.92100 0.89740 0.91499 0.93162 0.93572 0.91641 0.93965 0.95005 0.92280 0.93498 0.91996 0.90297 0.91573 0.91056 0.93921 0.92720 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 7.85 71.98 0.56 -3.47 16 2 C -0.37 -10.35 0.53 -10.79 -0.01 -10.36 16 3 C -0.13 -2.72 7.85 71.98 0.56 -2.15 16 4 C -0.13 -4.08 7.85 71.98 0.56 -3.51 16 5 Si 1.26 35.23 8.45 68.60 0.58 35.81 16 6 C -0.50 -12.03 8.50 113.37 0.96 -11.07 16 7 C -0.49 -12.28 8.50 113.37 0.96 -11.32 16 8 O -0.63 -24.51 8.03 -148.98 -1.20 -25.70 16 9 C 0.08 2.98 5.47 71.98 0.39 3.37 16 10 C 0.13 6.08 5.71 86.38 0.49 6.57 16 11 N -0.58 -27.33 2.36 -674.03 -1.59 -28.92 16 12 C -0.19 -10.21 7.26 84.03 0.61 -9.60 16 13 H 0.04 2.28 6.94 -2.91 -0.02 2.26 16 14 C -0.02 -1.41 4.97 84.86 0.42 -0.98 16 15 N -0.92 -54.20 11.48 21.65 0.25 -53.95 16 16 Si 0.92 47.00 29.60 68.60 2.03 49.03 16 17 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 19 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 20 C 0.16 6.35 3.42 45.72 0.16 6.51 16 21 C -0.13 -4.50 6.43 31.70 0.20 -4.30 16 22 C -0.11 -3.24 6.91 31.91 0.22 -3.02 16 23 C -0.11 -3.77 6.83 31.67 0.22 -3.55 16 24 C -0.13 -5.08 6.25 31.32 0.20 -4.88 16 25 H 0.07 1.75 7.79 -2.39 -0.02 1.73 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.03 1.07 7.97 -2.39 -0.02 1.05 16 28 H 0.07 1.21 7.79 -2.39 -0.02 1.19 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.20 7.79 -2.38 -0.02 1.19 16 31 H 0.03 1.22 7.97 -2.39 -0.02 1.21 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.76 7.79 -2.38 -0.02 1.74 16 34 H 0.07 1.60 7.48 -2.39 -0.02 1.58 16 35 H 0.09 1.68 7.79 -2.39 -0.02 1.66 16 36 H 0.06 1.60 7.79 -2.39 -0.02 1.58 16 37 H 0.06 1.65 7.79 -2.39 -0.02 1.63 16 38 H 0.08 1.69 7.79 -2.38 -0.02 1.68 16 39 H 0.07 1.61 7.48 -2.39 -0.02 1.59 16 40 H 0.05 1.59 7.21 -2.39 -0.02 1.57 16 41 H 0.05 1.55 7.22 -2.39 -0.02 1.53 16 42 H 0.07 3.50 5.55 -2.39 -0.01 3.49 16 43 H 0.04 1.76 7.90 -2.39 -0.02 1.74 16 44 H 0.24 14.01 8.32 -92.71 -0.77 13.24 16 45 H 0.06 2.16 7.81 -2.39 -0.02 2.15 16 46 H 0.05 1.90 6.64 -2.39 -0.02 1.89 16 47 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 48 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 49 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 53 H 0.04 1.95 7.17 -2.38 -0.02 1.93 16 Total: -1.00 -62.75 406.80 7.41 -55.33 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.81 Total: 20.18 kcal Atomic # 6 Polarization: -58.29 SS G_CDS: 6.53 Total: -51.77 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -1.34 Total: -82.88 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -1.20 Total: -25.70 kcal Atomic # 14 Polarization: 82.23 SS G_CDS: 2.61 Total: 84.84 kcal Total: -62.75 7.41 -55.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808729301.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.762 kcal (2) G-P(sol) polarization free energy of solvation -62.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds