Wall clock time and date at job start Tue Mar 31 2020 11:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.50412 * 2 1 4 4 C 1.53097 * 109.50446 * 239.91579 * 2 1 3 5 5 N 1.47016 * 109.25580 * 183.21355 * 4 2 1 6 6 C 1.46898 * 110.99994 * 182.38964 * 5 4 2 7 7 C 1.53006 * 109.46953 * 169.99953 * 6 5 4 8 8 N 1.46498 * 109.47063 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00139 * 180.02562 * 8 7 6 10 10 O 1.21593 * 119.99825 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00083 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99795 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46864 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47060 * 299.99684 * 13 12 11 15 15 C 1.52995 * 109.47119 * 59.99819 * 13 12 11 16 16 C 1.50701 * 109.46908 * 179.97438 * 13 12 11 17 17 H 1.07999 * 120.00103 * 0.02562 * 16 13 12 18 18 C 1.37868 * 119.99832 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00230 * 359.97438 * 18 16 13 20 20 Si 1.86809 * 120.00061 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46663 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47415 * 119.99620 * 20 18 16 23 23 H 1.48502 * 109.46994 * 240.00092 * 20 18 16 24 24 C 1.47015 * 110.75095 * 58.61926 * 5 4 2 25 25 C 1.53098 * 109.25723 * 301.38182 * 24 5 4 26 26 O 1.43014 * 109.50279 * 120.13386 * 2 1 3 27 27 H 1.09007 * 109.47314 * 180.08300 * 1 2 3 28 28 H 1.08994 * 109.47558 * 300.08423 * 1 2 3 29 29 H 1.09003 * 109.46974 * 60.08343 * 1 2 3 30 30 H 1.09000 * 109.50984 * 63.28479 * 4 2 1 31 31 H 1.08995 * 109.51315 * 303.14867 * 4 2 1 32 32 H 1.08994 * 109.47795 * 290.00356 * 6 5 4 33 33 H 1.08996 * 109.47199 * 50.00736 * 6 5 4 34 34 H 1.08994 * 109.47199 * 300.00767 * 7 6 5 35 35 H 1.09009 * 109.46751 * 60.00423 * 7 6 5 36 36 H 0.96998 * 120.00018 * 0.02562 * 8 7 6 37 37 H 0.97005 * 120.00351 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.47112 * 300.00235 * 12 11 9 39 39 H 1.08993 * 109.47342 * 60.00454 * 12 11 9 40 40 H 1.09001 * 109.47029 * 60.00377 * 14 13 12 41 41 H 1.08997 * 109.46981 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.47169 * 300.00549 * 14 13 12 43 43 H 1.09007 * 109.47361 * 60.00190 * 15 13 12 44 44 H 1.08999 * 109.47034 * 179.97438 * 15 13 12 45 45 H 1.09001 * 109.47367 * 299.99866 * 15 13 12 46 46 H 0.97002 * 119.99968 * 180.02562 * 19 18 16 47 47 H 1.08999 * 109.50673 * 61.31448 * 24 5 4 48 48 H 1.09004 * 109.50788 * 181.44864 * 24 5 4 49 49 H 1.08997 * 109.51060 * 296.91507 * 25 24 5 50 50 H 1.08998 * 109.54334 * 176.80599 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5093 -0.7879 -1.2048 6 6 4.0446 -1.4258 -2.4149 7 6 5.5645 -1.2536 -2.4524 8 7 6.0983 -1.8893 -3.6595 9 6 7.4233 -1.8637 -3.9049 10 8 8.1756 -1.3134 -3.1241 11 7 7.9143 -2.4481 -5.0156 12 6 9.3547 -2.4207 -5.2820 13 6 9.6441 -3.1485 -6.5965 14 6 9.1726 -4.6001 -6.4903 15 6 8.9009 -2.4531 -7.7388 16 6 11.1257 -3.1198 -6.8708 17 1 11.7940 -2.6318 -6.1769 18 6 11.6280 -3.7175 -8.0071 19 7 10.8143 -4.3131 -8.8514 20 14 13.4646 -3.6826 -8.3469 21 1 14.1568 -2.9569 -7.2517 22 1 13.9804 -5.0730 -8.4233 23 1 13.7164 -2.9896 -9.6359 24 6 3.9639 -1.4884 0.0051 25 6 3.4334 -0.7573 1.2412 26 8 2.0075 -0.6768 1.1659 27 1 -0.3634 -1.0277 0.0015 28 1 -0.3634 0.5151 0.8892 29 1 -0.3633 0.5126 -0.8908 30 1 1.7273 -0.1786 -2.1391 31 1 1.6332 -1.7337 -1.2768 32 1 3.7994 -2.4878 -2.4047 33 1 3.6044 -0.9598 -3.2964 34 1 5.8096 -0.1916 -2.4627 35 1 6.0048 -1.7197 -1.5709 36 1 5.4982 -2.3286 -4.2822 37 1 7.3141 -2.8868 -5.6388 38 1 9.6906 -1.3866 -5.3581 39 1 9.8842 -2.9158 -4.4681 40 1 8.1009 -4.6204 -6.2921 41 1 9.3783 -5.1184 -7.4268 42 1 9.7020 -5.0955 -5.6764 43 1 9.2368 -1.4188 -7.8145 44 1 9.1074 -2.9712 -8.6752 45 1 7.8292 -2.4734 -7.5406 46 1 11.1678 -4.7339 -9.6507 47 1 3.5866 -2.5109 -0.0029 48 1 5.0536 -1.5020 0.0300 49 1 3.8533 0.2478 1.2778 50 1 3.7201 -1.3044 2.1394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838114598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:23 Heat of formation + Delta-G solvation = -77.620919 kcal Electronic energy + Delta-G solvation = -26367.779648 eV Core-core repulsion = 22622.933915 eV Total energy + Delta-G solvation = -3744.845733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.16342 -39.51070 -36.93335 -36.25634 -34.24193 -33.25951 -33.16556 -30.93783 -29.73874 -28.40324 -25.77423 -25.71527 -25.30171 -24.47055 -23.67883 -21.68707 -20.81050 -20.57517 -18.77151 -18.10303 -16.86066 -16.68299 -16.08135 -15.87485 -15.80340 -15.31855 -15.10151 -14.92563 -14.71879 -14.22793 -13.90508 -13.79314 -13.42189 -13.05930 -12.85829 -12.81371 -12.74624 -12.36581 -12.23487 -12.16242 -11.83586 -11.55964 -11.40167 -11.25634 -11.19585 -10.88608 -10.84806 -10.64974 -10.37546 -10.20320 -9.99588 -9.78715 -9.62155 -9.30006 -8.97656 -8.83134 -8.77225 -8.41024 -8.17964 -6.01502 -4.11170 2.86656 3.27757 3.36111 3.36583 3.41418 3.58519 3.65392 4.32623 4.39750 4.49797 4.54734 4.71621 4.75828 4.76681 4.85095 4.90356 5.05408 5.13865 5.18886 5.21810 5.25412 5.25668 5.43821 5.50388 5.62675 5.70534 5.73985 5.83525 6.22354 6.38078 6.45449 6.50628 6.52007 6.66915 6.81136 6.81778 6.83599 6.91777 7.04253 7.10869 7.30507 7.42173 7.56861 7.70940 8.02106 8.13554 8.39156 8.48993 8.89049 9.05304 9.54592 10.99974 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.001949 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.954286 B =14359.834689 C =14681.670522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.025 3.975 5 N -0.533 5.533 6 C 0.045 3.955 7 C 0.145 3.855 8 N -0.755 5.755 9 C 0.699 3.301 10 O -0.599 6.599 11 N -0.733 5.733 12 C 0.150 3.850 13 C 0.055 3.945 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.503 4.503 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.011 3.989 25 C 0.065 3.935 26 O -0.384 6.384 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.392 0.608 37 H 0.393 0.607 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.005 0.995 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.005 0.995 46 H 0.259 0.741 47 H 0.045 0.955 48 H 0.094 0.906 49 H 0.061 0.939 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.905 5.202 13.803 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.103 4.103 5 N -0.258 5.258 6 C -0.083 4.083 7 C 0.020 3.980 8 N -0.412 5.412 9 C 0.398 3.602 10 O -0.478 6.478 11 N -0.387 5.387 12 C 0.027 3.973 13 C 0.054 3.946 14 C -0.187 4.187 15 C -0.187 4.187 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.117 4.117 25 C -0.012 4.012 26 O -0.303 6.303 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.225 0.775 37 H 0.228 0.772 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.024 0.976 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.103 0.897 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.112 0.888 49 H 0.079 0.921 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.095 6.021 14.509 25.506 hybrid contribution 0.339 -1.218 -1.123 1.691 sum -19.755 4.803 13.385 24.341 Atomic orbital electron populations 1.21754 0.92737 1.02990 1.02774 1.22160 0.94840 0.95736 0.84215 0.91382 1.22832 0.87424 1.00412 0.99663 1.62066 1.08905 1.52865 1.01989 1.22265 0.95240 0.97650 0.93136 1.20977 0.91196 0.98762 0.87095 1.45007 1.06725 1.62890 1.26624 1.16022 0.81640 0.79932 0.82573 1.90889 1.57399 1.50528 1.48936 1.45503 1.10744 1.59384 1.23097 1.21585 0.76231 1.00357 0.99087 1.18379 0.95930 0.91600 0.88686 1.21816 0.94965 0.99361 1.02576 1.21816 0.94604 0.99221 1.03078 1.21026 0.91045 1.35412 1.06701 0.92337 1.24886 0.97780 0.95007 0.95947 1.69816 1.33859 1.36720 1.12132 0.86514 0.85524 0.77666 0.78174 1.19736 1.21096 1.21090 1.22927 1.01945 0.96296 0.90525 1.22658 0.80754 1.00587 0.97208 1.87988 1.21230 1.78348 1.42778 0.91874 0.91483 0.90838 0.89478 0.93791 0.93955 0.89854 0.90912 0.91922 0.77460 0.77225 0.92940 0.92973 0.97585 0.89653 0.95464 0.95443 0.89668 0.97564 0.93103 0.93715 0.88820 0.92056 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.57 37.16 0.36 -0.46 16 2 C 0.09 0.67 3.43 -26.68 -0.09 0.58 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.02 0.19 4.93 -3.71 -0.02 0.17 16 5 N -0.53 -4.63 4.73 -234.31 -1.11 -5.74 16 6 C 0.05 0.39 5.07 -3.82 -0.02 0.37 16 7 C 0.14 1.67 5.61 -4.04 -0.02 1.64 16 8 N -0.75 -9.75 5.56 -65.22 -0.36 -10.12 16 9 C 0.70 12.53 8.57 -86.92 -0.74 11.79 16 10 O -0.60 -13.21 16.34 5.28 0.09 -13.12 16 11 N -0.73 -13.22 4.96 -65.22 -0.32 -13.54 16 12 C 0.15 3.25 4.50 -4.03 -0.02 3.23 16 13 C 0.05 1.27 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 15 C -0.13 -2.91 8.08 37.15 0.30 -2.61 16 16 C -0.50 -13.22 8.01 -34.44 -0.28 -13.49 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.71 5.15 -17.82 -0.09 1.61 16 19 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 20 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 25 C 0.06 0.51 7.01 37.21 0.26 0.77 16 26 O -0.38 -3.59 10.47 -35.23 -0.37 -3.96 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.35 8.12 -51.93 -0.42 -0.08 16 33 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.78 6.52 -51.92 -0.34 0.44 16 36 H 0.39 3.94 8.49 -40.82 -0.35 3.59 16 37 H 0.39 6.30 6.18 -40.82 -0.25 6.05 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 41 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 44 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 45 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 46 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.80 6.38 -51.93 -0.33 0.46 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -30.45 385.78 -9.84 -40.28 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.91 Total: 5.47 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.16 Total: 2.25 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -1.28 Total: -52.48 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.28 Total: -17.08 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.45 -9.84 -40.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838114598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.338 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds