Wall clock time and date at job start Tue Mar 31 2020 11:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.50412 * 2 1 4 4 C 1.53097 * 109.50446 * 239.91579 * 2 1 3 5 5 N 1.47016 * 109.25580 * 183.21355 * 4 2 1 6 6 C 1.46898 * 110.99994 * 182.38964 * 5 4 2 7 7 C 1.53006 * 109.46953 * 169.99953 * 6 5 4 8 8 N 1.46498 * 109.47063 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00139 * 180.02562 * 8 7 6 10 10 O 1.21593 * 119.99825 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00083 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99795 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46864 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47060 * 299.99684 * 13 12 11 15 15 C 1.52995 * 109.47119 * 59.99819 * 13 12 11 16 16 C 1.50701 * 109.46908 * 179.97438 * 13 12 11 17 17 H 1.07999 * 120.00103 * 0.02562 * 16 13 12 18 18 C 1.37868 * 119.99832 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00230 * 359.97438 * 18 16 13 20 20 Si 1.86809 * 120.00061 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46663 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47415 * 119.99620 * 20 18 16 23 23 H 1.48502 * 109.46994 * 240.00092 * 20 18 16 24 24 C 1.47015 * 110.75095 * 58.61926 * 5 4 2 25 25 C 1.53098 * 109.25723 * 301.38182 * 24 5 4 26 26 O 1.43014 * 109.50279 * 120.13386 * 2 1 3 27 27 H 1.09007 * 109.47314 * 180.08300 * 1 2 3 28 28 H 1.08994 * 109.47558 * 300.08423 * 1 2 3 29 29 H 1.09003 * 109.46974 * 60.08343 * 1 2 3 30 30 H 1.09000 * 109.50984 * 63.28479 * 4 2 1 31 31 H 1.08995 * 109.51315 * 303.14867 * 4 2 1 32 32 H 1.08994 * 109.47795 * 290.00356 * 6 5 4 33 33 H 1.08996 * 109.47199 * 50.00736 * 6 5 4 34 34 H 1.08994 * 109.47199 * 300.00767 * 7 6 5 35 35 H 1.09009 * 109.46751 * 60.00423 * 7 6 5 36 36 H 0.96998 * 120.00018 * 0.02562 * 8 7 6 37 37 H 0.97005 * 120.00351 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.47112 * 300.00235 * 12 11 9 39 39 H 1.08993 * 109.47342 * 60.00454 * 12 11 9 40 40 H 1.09001 * 109.47029 * 60.00377 * 14 13 12 41 41 H 1.08997 * 109.46981 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.47169 * 300.00549 * 14 13 12 43 43 H 1.09007 * 109.47361 * 60.00190 * 15 13 12 44 44 H 1.08999 * 109.47034 * 179.97438 * 15 13 12 45 45 H 1.09001 * 109.47367 * 299.99866 * 15 13 12 46 46 H 0.97002 * 119.99968 * 180.02562 * 19 18 16 47 47 H 1.08999 * 109.50673 * 61.31448 * 24 5 4 48 48 H 1.09004 * 109.50788 * 181.44864 * 24 5 4 49 49 H 1.08997 * 109.51060 * 296.91507 * 25 24 5 50 50 H 1.08998 * 109.54334 * 176.80599 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5093 -0.7879 -1.2048 6 6 4.0446 -1.4258 -2.4149 7 6 5.5645 -1.2536 -2.4524 8 7 6.0983 -1.8893 -3.6595 9 6 7.4233 -1.8637 -3.9049 10 8 8.1756 -1.3134 -3.1241 11 7 7.9143 -2.4481 -5.0156 12 6 9.3547 -2.4207 -5.2820 13 6 9.6441 -3.1485 -6.5965 14 6 9.1726 -4.6001 -6.4903 15 6 8.9009 -2.4531 -7.7388 16 6 11.1257 -3.1198 -6.8708 17 1 11.7940 -2.6318 -6.1769 18 6 11.6280 -3.7175 -8.0071 19 7 10.8143 -4.3131 -8.8514 20 14 13.4646 -3.6826 -8.3469 21 1 14.1568 -2.9569 -7.2517 22 1 13.9804 -5.0730 -8.4233 23 1 13.7164 -2.9896 -9.6359 24 6 3.9639 -1.4884 0.0051 25 6 3.4334 -0.7573 1.2412 26 8 2.0075 -0.6768 1.1659 27 1 -0.3634 -1.0277 0.0015 28 1 -0.3634 0.5151 0.8892 29 1 -0.3633 0.5126 -0.8908 30 1 1.7273 -0.1786 -2.1391 31 1 1.6332 -1.7337 -1.2768 32 1 3.7994 -2.4878 -2.4047 33 1 3.6044 -0.9598 -3.2964 34 1 5.8096 -0.1916 -2.4627 35 1 6.0048 -1.7197 -1.5709 36 1 5.4982 -2.3286 -4.2822 37 1 7.3141 -2.8868 -5.6388 38 1 9.6906 -1.3866 -5.3581 39 1 9.8842 -2.9158 -4.4681 40 1 8.1009 -4.6204 -6.2921 41 1 9.3783 -5.1184 -7.4268 42 1 9.7020 -5.0955 -5.6764 43 1 9.2368 -1.4188 -7.8145 44 1 9.1074 -2.9712 -8.6752 45 1 7.8292 -2.4734 -7.5406 46 1 11.1678 -4.7339 -9.6507 47 1 3.5866 -2.5109 -0.0029 48 1 5.0536 -1.5020 0.0300 49 1 3.8533 0.2478 1.2778 50 1 3.7201 -1.3044 2.1394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838114598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:22 Heat of formation + Delta-G solvation = -99.561455 kcal Electronic energy + Delta-G solvation = -26368.731061 eV Core-core repulsion = 22622.933915 eV Total energy + Delta-G solvation = -3745.797146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12116 -40.62720 -38.34247 -37.39348 -35.38596 -34.95186 -33.76224 -32.71270 -30.63302 -29.11287 -27.54428 -27.43205 -26.75563 -25.62870 -24.42481 -22.44696 -22.05747 -21.36960 -20.57647 -19.51179 -17.77928 -17.62287 -17.38203 -16.98671 -16.87653 -16.57709 -16.23989 -16.02776 -15.77874 -15.29821 -15.16616 -15.02477 -14.69677 -14.50545 -14.29076 -13.97624 -13.58810 -13.23327 -13.19915 -13.09417 -13.02469 -12.81128 -12.72633 -12.58772 -12.55669 -12.23672 -12.13175 -12.12154 -11.97761 -11.50621 -11.46816 -11.38419 -11.14063 -10.68481 -10.61915 -10.40501 -10.29396 -9.65542 -9.47912 -8.01504 -6.16685 1.41819 1.45999 1.55257 1.71784 2.20686 2.46463 2.71902 2.85978 3.22143 3.50094 3.69644 3.86398 3.91818 4.05340 4.15590 4.22066 4.25454 4.40410 4.43881 4.53106 4.55070 4.61518 4.70576 4.72295 4.73919 4.80808 4.88035 4.91436 4.97765 5.02548 5.07860 5.09753 5.12493 5.21986 5.28498 5.39702 5.47232 5.64003 5.68880 5.69042 5.86533 5.88283 6.08044 6.17083 6.22481 6.23605 6.45227 6.87711 7.17180 7.50905 7.64152 8.97575 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.001949 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.954286 B =14359.834689 C =14681.670522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.064 0.936 4 C 0.028 3.972 5 N -0.544 5.544 6 C 0.057 3.943 7 C 0.148 3.852 8 N -0.732 5.732 9 C 0.697 3.303 10 O -0.642 6.642 11 N -0.725 5.725 12 C 0.168 3.832 13 C 0.050 3.950 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.526 4.526 17 H 0.044 0.956 18 C 0.027 3.973 19 N -0.899 5.899 20 Si 0.945 3.055 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.012 3.988 25 C 0.064 3.936 26 O -0.402 6.402 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.411 0.589 37 H 0.406 0.594 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.037 0.963 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.260 0.740 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.059 0.941 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.776 5.097 13.632 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.082 0.918 4 C -0.100 4.100 5 N -0.269 5.269 6 C -0.071 4.071 7 C 0.023 3.977 8 N -0.390 5.390 9 C 0.397 3.603 10 O -0.525 6.525 11 N -0.380 5.380 12 C 0.043 3.957 13 C 0.050 3.950 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.565 4.565 17 H 0.062 0.938 18 C -0.173 4.173 19 N -0.538 5.538 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.116 4.116 25 C -0.013 4.013 26 O -0.321 6.321 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.247 0.753 37 H 0.243 0.757 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.107 0.893 49 H 0.077 0.923 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.036 5.899 14.322 26.935 hybrid contribution 0.884 -1.157 -1.028 1.782 sum -21.152 4.742 13.294 25.429 Atomic orbital electron populations 1.21755 0.91333 1.03092 1.03641 1.22321 0.95975 0.95383 0.83814 0.91757 1.22864 0.86391 1.00568 1.00204 1.62052 1.09868 1.53039 1.01978 1.22144 0.92739 0.98452 0.93790 1.21012 0.93314 0.97463 0.85930 1.44784 1.05080 1.61944 1.27201 1.16156 0.82867 0.79428 0.81888 1.90866 1.59018 1.52316 1.50269 1.45181 1.09442 1.59753 1.23662 1.21119 0.78198 0.98721 0.97650 1.18380 0.94621 0.92426 0.89612 1.21654 0.96878 0.98228 1.00936 1.21655 0.96480 0.98042 1.01522 1.21292 0.92773 1.35638 1.06755 0.93778 1.25449 1.00976 0.94916 0.95917 1.69912 1.34892 1.36780 1.12188 0.85709 0.81740 0.77573 0.77787 1.20063 1.20746 1.20740 1.22899 1.01623 0.96233 0.90802 1.22724 0.80329 1.00628 0.97612 1.87972 1.21794 1.78623 1.43731 0.92097 0.91608 0.89021 0.87963 0.93862 0.92993 0.88283 0.92488 0.92908 0.75258 0.75723 0.94705 0.94716 0.94377 0.91905 0.96394 0.96374 0.91920 0.94347 0.93054 0.93912 0.89325 0.92299 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.57 71.98 0.69 -0.65 16 2 C 0.08 1.13 3.43 30.63 0.10 1.23 16 3 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 4 C 0.03 0.35 4.93 86.31 0.43 0.78 16 5 N -0.54 -8.50 4.73 -895.22 -4.23 -12.73 16 6 C 0.06 0.83 5.07 86.31 0.44 1.27 16 7 C 0.15 3.18 5.61 86.38 0.48 3.67 16 8 N -0.73 -17.36 5.56 -478.52 -2.66 -20.02 16 9 C 0.70 24.17 8.57 179.06 1.53 25.70 16 10 O -0.64 -28.36 16.34 -4.01 -0.07 -28.43 16 11 N -0.72 -25.04 4.96 -478.52 -2.37 -27.41 16 12 C 0.17 7.23 4.50 86.38 0.39 7.62 16 13 C 0.05 2.32 0.50 -52.93 -0.03 2.30 16 14 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 15 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 16 C -0.53 -27.88 8.01 25.60 0.21 -27.67 16 17 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 18 C 0.03 1.42 5.15 84.65 0.44 1.86 16 19 N -0.90 -47.70 9.35 21.44 0.20 -47.50 16 20 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C 0.01 0.20 5.44 86.31 0.47 0.67 16 25 C 0.06 0.96 7.01 72.01 0.50 1.47 16 26 O -0.40 -7.11 10.47 -148.98 -1.56 -8.67 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 33 H 0.10 1.17 8.04 -2.39 -0.02 1.15 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.27 6.52 -2.38 -0.02 1.26 16 36 H 0.41 6.87 8.49 -92.71 -0.79 6.09 16 37 H 0.41 11.84 6.18 -92.70 -0.57 11.27 16 38 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 41 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 45 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 46 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 47 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.09 1.47 6.38 -2.38 -0.02 1.45 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -65.53 385.78 -2.29 -67.82 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.43 Total: 23.32 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.81 Total: 8.91 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -9.07 Total: -107.67 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.63 Total: -37.10 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -65.53 -2.29 -67.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838114598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.744 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds