Wall clock time and date at job start Tue Mar 31 2020 11:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00121 * 2 1 4 4 H 1.48495 * 109.47359 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47520 * 119.99601 * 3 2 1 6 6 H 1.48503 * 109.47102 * 239.99527 * 3 2 1 7 7 C 1.37882 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 181.78218 * 7 2 1 9 9 C 1.50701 * 120.00138 * 1.77437 * 7 2 1 10 10 O 1.45199 * 112.84965 * 298.52756 * 9 7 2 11 11 C 1.34899 * 116.99698 * 294.87810 * 10 9 7 12 12 O 1.21623 * 120.00414 * 2.99283 * 11 10 9 13 13 C 1.46467 * 119.99687 * 182.98849 * 11 10 9 14 14 C 1.36648 * 125.98622 * 179.72056 * 13 11 10 15 15 C 1.40357 * 106.70652 * 179.90976 * 14 13 11 16 16 Br 1.89098 * 126.44767 * 180.13530 * 15 14 13 17 17 C 1.35228 * 107.10976 * 0.34955 * 15 14 13 18 18 O 1.33952 * 108.77097 * 359.78416 * 17 15 14 19 19 C 1.53778 * 113.61327 * 167.32517 * 9 7 2 20 20 C 1.53949 * 87.02190 * 220.05220 * 19 9 7 21 21 C 1.53781 * 113.60837 * 69.72216 * 9 7 2 22 22 H 0.97002 * 120.00268 * 175.06947 * 1 2 3 23 23 H 1.08005 * 126.64996 * 0.02562 * 14 13 11 24 24 H 1.07996 * 125.61493 * 179.80286 * 17 15 14 25 25 H 1.09003 * 113.61443 * 334.57536 * 19 9 7 26 26 H 1.09004 * 113.61304 * 105.47406 * 19 9 7 27 27 H 1.09006 * 113.53745 * 270.81585 * 20 19 9 28 28 H 1.09002 * 113.74816 * 139.94391 * 20 19 9 29 29 H 1.09002 * 113.61382 * 254.52675 * 21 9 7 30 30 H 1.09000 * 113.62030 * 25.34519 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0841 -1.1944 0.0296 9 6 1.2515 -2.4989 -0.0393 10 8 0.3850 -2.6852 1.1108 11 6 0.9821 -2.8029 2.3147 12 8 2.1901 -2.6969 2.4074 13 6 0.1755 -3.0584 3.5103 14 6 0.6504 -3.2039 4.7833 15 6 -0.4638 -3.4307 5.6062 16 35 -0.4415 -3.7039 7.4772 17 6 -1.5558 -3.4217 4.8086 18 8 -1.1662 -3.1972 3.5468 19 6 2.1422 -3.7151 -0.3430 20 6 0.9941 -4.2339 -1.2277 21 6 0.5564 -2.7680 -1.3844 22 1 -0.4850 -0.8369 -0.0722 23 1 1.6829 -3.1524 5.0960 24 1 -2.5743 -3.5707 5.1353 25 1 3.0452 -3.4666 -0.9007 26 1 2.3400 -4.3399 0.5281 27 1 0.2736 -4.8496 -0.6891 28 1 1.3294 -4.6913 -2.1585 29 1 -0.5243 -2.6293 -1.3529 30 1 1.0240 -2.2590 -2.2272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838878103.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:50 Heat of formation + Delta-G solvation = -44.118465 kcal Electronic energy + Delta-G solvation = -18574.310453 eV Core-core repulsion = 15383.855183 eV Total energy + Delta-G solvation = -3190.455270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.999 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.72166 -39.58499 -37.24123 -34.50407 -33.63787 -32.46891 -30.95323 -29.42518 -26.15423 -24.86737 -24.08143 -22.40502 -21.53646 -20.32706 -18.64542 -17.99302 -17.30436 -16.37521 -15.99135 -15.40837 -14.79148 -13.98694 -13.78526 -13.65252 -13.30457 -13.17569 -13.05542 -12.43641 -12.24937 -11.74419 -11.49683 -10.90387 -10.65691 -10.51330 -10.47608 -10.28816 -10.22083 -10.07461 -9.86649 -9.60833 -9.15601 -8.70316 -8.53926 -8.24058 -6.45341 -4.25196 1.09822 1.41521 2.02025 2.70150 3.39391 3.42365 3.54096 3.61022 3.65745 4.45842 4.65030 4.82280 5.21826 5.33964 5.46320 5.48994 5.60123 5.68421 5.88021 6.03082 6.18150 6.26793 6.59597 6.63085 6.73232 6.79739 7.02021 7.22351 7.45227 7.98637 8.31684 8.69360 8.78609 9.51402 10.92274 Molecular weight = 314.00amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.004177 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.546365 B = 6701.343952 C = 7397.728443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.031 3.969 3 Si 1.065 2.935 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.596 4.596 8 H 0.062 0.938 9 C 0.207 3.793 10 O -0.340 6.340 11 C 0.547 3.453 12 O -0.471 6.471 13 C -0.022 4.022 14 C -0.110 4.110 15 C -0.200 4.200 16 Br -0.012 7.012 17 C 0.031 3.969 18 O -0.134 6.134 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.108 4.108 22 H 0.280 0.720 23 H 0.170 0.830 24 H 0.218 0.782 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 -8.688 11.482 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.177 4.177 3 Si 0.892 3.108 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.633 4.633 8 H 0.080 0.920 9 C 0.174 3.826 10 O -0.257 6.257 11 C 0.389 3.611 12 O -0.360 6.360 13 C -0.074 4.074 14 C -0.131 4.131 15 C -0.281 4.281 16 Br 0.072 6.928 17 C -0.043 4.043 18 O -0.027 6.027 19 C -0.182 4.182 20 C -0.186 4.186 21 C -0.146 4.146 22 H 0.092 0.908 23 H 0.187 0.813 24 H 0.235 0.765 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.860 -7.089 11.900 14.380 hybrid contribution 0.293 -1.579 -0.124 1.610 sum -3.567 -8.668 11.777 15.052 Atomic orbital electron populations 1.70703 1.06804 1.32136 1.42581 1.25909 0.96487 1.02709 0.92600 0.83608 0.75080 0.75205 0.76873 1.20628 1.21246 1.21060 1.22046 0.94528 0.90226 1.56454 0.92023 1.21040 0.87076 0.94277 0.80199 1.86587 1.43615 1.80468 1.15012 1.18828 0.85122 0.74775 0.82382 1.90881 1.13358 1.45548 1.86184 1.21693 0.80249 1.10261 0.95170 1.21713 1.00365 1.01215 0.89799 1.22023 0.95949 1.17071 0.93017 1.96639 1.99155 1.96073 1.00928 1.24378 0.99603 0.99794 0.80487 1.84305 1.22859 1.66957 1.28569 1.23375 0.97701 0.98237 0.98920 1.22999 0.98937 0.97298 0.99413 1.22959 1.00184 0.94086 0.97353 0.90831 0.81289 0.76546 0.89681 0.92795 0.91185 0.92401 0.92182 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.51 55.43 0.75 -25.26 16 2 C 0.03 0.88 5.40 -17.82 -0.10 0.78 16 3 Si 1.06 25.03 29.90 -169.99 -5.08 19.95 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.60 -16.50 7.36 -34.44 -0.25 -16.75 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.21 5.15 0.11 -90.96 -0.01 5.14 16 10 O -0.34 -8.52 9.11 -42.49 -0.39 -8.91 16 11 C 0.55 12.89 7.31 34.04 0.25 13.14 16 12 O -0.47 -11.90 15.02 -19.36 -0.29 -12.20 16 13 C -0.02 -0.43 7.18 -36.84 -0.26 -0.69 16 14 C -0.11 -1.81 10.61 -39.36 -0.42 -2.23 16 15 C -0.20 -2.75 6.58 -39.86 -0.26 -3.01 16 16 Br -0.01 -0.13 34.10 -68.01 -2.32 -2.45 16 17 C 0.03 0.40 12.05 29.66 0.36 0.76 16 18 O -0.13 -2.32 10.67 4.65 0.05 -2.27 16 19 C -0.14 -3.13 6.91 -25.83 -0.18 -3.31 16 20 C -0.15 -2.82 8.03 -25.83 -0.21 -3.03 16 21 C -0.11 -2.38 6.67 -25.92 -0.17 -2.55 16 22 H 0.28 8.18 5.76 -40.82 -0.24 7.94 16 23 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 24 H 0.22 1.76 8.06 -52.49 -0.42 1.33 16 25 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 26 H 0.05 1.16 7.32 -51.93 -0.38 0.78 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.33 7.77 -51.93 -0.40 0.92 16 30 H 0.09 1.99 8.09 -51.93 -0.42 1.57 16 LS Contribution 289.09 15.07 4.36 4.36 Total: -1.00 -31.08 289.09 -6.94 -38.02 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -2.76 Total: 0.51 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.26 Total: -11.74 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.75 Total: -25.26 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.63 Total: -23.38 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -2.32 Total: -2.45 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.08 -6.94 -38.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838878103.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.099 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds