Wall clock time and date at job start Tue Mar 31 2020 11:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00121 * 2 1 4 4 H 1.48495 * 109.47359 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47520 * 119.99601 * 3 2 1 6 6 H 1.48503 * 109.47102 * 239.99527 * 3 2 1 7 7 C 1.37882 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 181.78218 * 7 2 1 9 9 C 1.50701 * 120.00138 * 1.77437 * 7 2 1 10 10 O 1.45199 * 112.84965 * 298.52756 * 9 7 2 11 11 C 1.34899 * 116.99698 * 294.87810 * 10 9 7 12 12 O 1.21623 * 120.00414 * 2.99283 * 11 10 9 13 13 C 1.46467 * 119.99687 * 182.98849 * 11 10 9 14 14 C 1.36648 * 125.98622 * 179.72056 * 13 11 10 15 15 C 1.40357 * 106.70652 * 179.90976 * 14 13 11 16 16 Br 1.89098 * 126.44767 * 180.13530 * 15 14 13 17 17 C 1.35228 * 107.10976 * 0.34955 * 15 14 13 18 18 O 1.33952 * 108.77097 * 359.78416 * 17 15 14 19 19 C 1.53778 * 113.61327 * 167.32517 * 9 7 2 20 20 C 1.53949 * 87.02190 * 220.05220 * 19 9 7 21 21 C 1.53781 * 113.60837 * 69.72216 * 9 7 2 22 22 H 0.97002 * 120.00268 * 175.06947 * 1 2 3 23 23 H 1.08005 * 126.64996 * 0.02562 * 14 13 11 24 24 H 1.07996 * 125.61493 * 179.80286 * 17 15 14 25 25 H 1.09003 * 113.61443 * 334.57536 * 19 9 7 26 26 H 1.09004 * 113.61304 * 105.47406 * 19 9 7 27 27 H 1.09006 * 113.53745 * 270.81585 * 20 19 9 28 28 H 1.09002 * 113.74816 * 139.94391 * 20 19 9 29 29 H 1.09002 * 113.61382 * 254.52675 * 21 9 7 30 30 H 1.09000 * 113.62030 * 25.34519 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0841 -1.1944 0.0296 9 6 1.2515 -2.4989 -0.0393 10 8 0.3850 -2.6852 1.1108 11 6 0.9821 -2.8029 2.3147 12 8 2.1901 -2.6969 2.4074 13 6 0.1755 -3.0584 3.5103 14 6 0.6504 -3.2039 4.7833 15 6 -0.4638 -3.4307 5.6062 16 35 -0.4415 -3.7039 7.4772 17 6 -1.5558 -3.4217 4.8086 18 8 -1.1662 -3.1972 3.5468 19 6 2.1422 -3.7151 -0.3430 20 6 0.9941 -4.2339 -1.2277 21 6 0.5564 -2.7680 -1.3844 22 1 -0.4850 -0.8369 -0.0722 23 1 1.6829 -3.1524 5.0960 24 1 -2.5743 -3.5707 5.1353 25 1 3.0452 -3.4666 -0.9007 26 1 2.3400 -4.3399 0.5281 27 1 0.2736 -4.8496 -0.6891 28 1 1.3294 -4.6913 -2.1585 29 1 -0.5243 -2.6293 -1.3529 30 1 1.0240 -2.2590 -2.2272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838878103.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:49 Heat of formation + Delta-G solvation = -61.974151 kcal Electronic energy + Delta-G solvation = -18575.084734 eV Core-core repulsion = 15383.855183 eV Total energy + Delta-G solvation = -3191.229550 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.999 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.99665 -41.40304 -39.02357 -36.30257 -34.87792 -34.55572 -32.18046 -30.61058 -28.10409 -26.61574 -25.73017 -24.15979 -22.78561 -21.84335 -20.37218 -19.71082 -19.04710 -17.75951 -17.47829 -17.13874 -16.56967 -15.72718 -15.68480 -15.35946 -14.67806 -14.44721 -14.36825 -14.21472 -14.01780 -13.25593 -12.79735 -12.77289 -12.48817 -12.35699 -12.10736 -11.95400 -11.94482 -11.65039 -11.41675 -10.99680 -10.81429 -10.62114 -10.21240 -9.88819 -8.63733 -6.43768 -0.28157 0.35544 0.83215 1.31037 1.49025 1.56086 1.75778 1.85718 2.12342 2.51274 3.13619 3.48536 3.59188 3.78353 3.82235 3.97579 4.09652 4.15475 4.41164 4.61483 4.71830 4.79869 4.87157 4.96317 5.03429 5.33790 5.38276 5.54619 5.60111 6.01015 6.12362 6.55512 6.89767 7.39172 8.73621 Molecular weight = 314.00amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.004177 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.546365 B = 6701.343952 C = 7397.728443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.012 4.012 3 Si 1.104 2.896 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.607 4.607 8 H 0.043 0.957 9 C 0.180 3.820 10 O -0.352 6.352 11 C 0.540 3.460 12 O -0.506 6.506 13 C -0.072 4.072 14 C -0.087 4.087 15 C -0.215 4.215 16 Br 0.019 6.981 17 C 0.067 3.933 18 O -0.151 6.151 19 C -0.143 4.143 20 C -0.122 4.122 21 C -0.108 4.108 22 H 0.270 0.730 23 H 0.173 0.827 24 H 0.270 0.730 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.721 -9.530 12.620 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.215 4.215 3 Si 0.926 3.074 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.645 4.645 8 H 0.062 0.938 9 C 0.147 3.853 10 O -0.268 6.268 11 C 0.385 3.615 12 O -0.397 6.397 13 C -0.123 4.123 14 C -0.108 4.108 15 C -0.296 4.296 16 Br 0.103 6.897 17 C -0.006 4.006 18 O -0.045 6.045 19 C -0.180 4.180 20 C -0.159 4.159 21 C -0.145 4.145 22 H 0.081 0.919 23 H 0.191 0.809 24 H 0.286 0.714 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.721 -7.952 13.033 15.980 hybrid contribution 0.507 -1.400 -0.263 1.512 sum -4.214 -9.352 12.770 16.379 Atomic orbital electron populations 1.70802 1.07448 1.31526 1.45030 1.27103 0.96642 1.05824 0.91914 0.83111 0.74432 0.72057 0.77776 1.20391 1.21101 1.18671 1.22250 0.93901 0.92090 1.56219 0.93833 1.21317 0.88508 0.94374 0.81146 1.86543 1.43625 1.80826 1.15848 1.19371 0.85469 0.73752 0.82951 1.90831 1.14708 1.47396 1.86729 1.21017 0.81357 1.15605 0.94319 1.21923 1.01428 0.98249 0.89158 1.22193 0.95079 1.17590 0.94710 1.96682 1.99100 1.95960 0.97963 1.25480 1.01422 0.95140 0.78539 1.84276 1.21768 1.67603 1.30886 1.23336 0.98319 0.97022 0.99367 1.22866 0.97241 0.95466 1.00296 1.22919 0.99423 0.96500 0.95704 0.91919 0.80912 0.71430 0.89576 0.93351 0.90206 0.88854 0.92913 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.73 13.51 21.45 0.29 -54.44 16 2 C -0.01 -0.69 5.40 84.66 0.46 -0.23 16 3 Si 1.10 51.09 29.90 68.60 2.05 53.15 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.61 -34.65 7.36 25.60 0.19 -34.46 16 8 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 9 C 0.18 9.17 0.11 -11.01 0.00 9.17 16 10 O -0.35 -18.19 9.11 -56.75 -0.52 -18.70 16 11 C 0.54 26.34 7.31 69.97 0.51 26.85 16 12 O -0.51 -26.63 15.02 19.43 0.29 -26.34 16 13 C -0.07 -2.84 7.18 24.04 0.17 -2.67 16 14 C -0.09 -2.79 10.61 22.41 0.24 -2.55 16 15 C -0.22 -5.38 6.58 22.09 0.15 -5.24 16 16 Br 0.02 0.37 34.10 -20.37 -0.69 -0.32 16 17 C 0.07 1.53 12.05 67.13 0.81 2.34 16 18 O -0.15 -5.10 10.67 -5.20 -0.06 -5.16 16 19 C -0.14 -6.20 6.91 31.18 0.22 -5.99 16 20 C -0.12 -4.42 8.03 31.18 0.25 -4.17 16 21 C -0.11 -4.77 6.67 31.12 0.21 -4.56 16 22 H 0.27 16.29 5.76 -92.71 -0.53 15.76 16 23 H 0.17 5.29 8.06 -2.91 -0.02 5.26 16 24 H 0.27 2.96 8.06 -2.91 -0.02 2.93 16 25 H 0.09 3.65 8.09 -2.39 -0.02 3.63 16 26 H 0.05 2.12 7.32 -2.38 -0.02 2.10 16 27 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 28 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.05 2.37 7.77 -2.39 -0.02 2.35 16 30 H 0.09 3.86 8.09 -2.39 -0.02 3.84 16 Total: -1.00 -70.02 289.09 5.96 -64.06 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.40 Total: 9.26 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 3.19 Total: -21.51 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.29 Total: -54.44 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.28 Total: -50.20 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.15 kcal Atomic # 35 Polarization: 0.37 SS G_CDS: -0.69 Total: -0.32 kcal Total: -70.02 5.96 -64.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838878103.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.087 kcal (2) G-P(sol) polarization free energy of solvation -70.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds