Wall clock time and date at job start Tue Mar 31 2020 10:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00003 * 2 1 4 4 C 1.50706 * 109.47023 * 66.04468 * 3 2 1 5 5 O 1.21283 * 119.99775 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00055 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00218 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.46962 * 179.97438 * 7 6 4 9 9 H 1.07992 * 120.00375 * 0.02562 * 8 7 6 10 10 C 1.37886 * 119.99487 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00213 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99754 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47226 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47318 * 120.00091 * 12 10 8 15 15 H 1.48498 * 109.47025 * 240.00254 * 12 10 8 16 16 C 1.46900 * 111.00273 * 236.04550 * 2 1 3 17 17 C 1.52997 * 109.47077 * 185.12983 * 16 2 1 18 18 C 1.53002 * 109.47023 * 65.12607 * 16 2 1 19 19 C 1.52996 * 109.47091 * 305.13108 * 16 2 1 20 20 N 1.46901 * 109.47233 * 307.69504 * 19 16 2 21 21 C 1.47010 * 110.99894 * 271.18220 * 20 19 16 22 22 C 1.53104 * 109.25772 * 177.60616 * 21 20 19 23 23 O 1.43020 * 109.25513 * 56.84855 * 22 21 20 24 24 C 1.43013 * 113.73699 * 301.32692 * 23 22 21 25 25 C 1.47014 * 111.00266 * 147.54620 * 20 19 16 26 26 H 1.08998 * 109.46987 * 186.27459 * 1 2 3 27 27 H 1.08998 * 109.47397 * 306.27983 * 1 2 3 28 28 H 1.08998 * 109.46806 * 66.28234 * 1 2 3 29 29 H 1.08998 * 109.47480 * 186.04357 * 3 2 1 30 30 H 1.08994 * 109.47053 * 306.04495 * 3 2 1 31 31 H 0.97005 * 120.00068 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.46882 * 300.00374 * 7 6 4 33 33 H 1.09009 * 109.46582 * 60.00105 * 7 6 4 34 34 H 0.97004 * 120.00167 * 179.97438 * 11 10 8 35 35 H 1.09009 * 109.46638 * 149.07070 * 17 16 2 36 36 H 1.09005 * 109.47267 * 269.06235 * 17 16 2 37 37 H 1.08990 * 109.47291 * 29.07199 * 17 16 2 38 38 H 1.09002 * 109.47417 * 300.00515 * 18 16 2 39 39 H 1.09008 * 109.47001 * 60.00201 * 18 16 2 40 40 H 1.09001 * 109.47132 * 179.97438 * 18 16 2 41 41 H 1.08999 * 109.47501 * 187.69508 * 19 16 2 42 42 H 1.09007 * 109.47293 * 67.69677 * 19 16 2 43 43 H 1.09001 * 109.50736 * 297.53455 * 21 20 19 44 44 H 1.09000 * 109.50876 * 57.67374 * 21 20 19 45 45 H 1.09003 * 109.50813 * 296.91613 * 22 21 20 46 46 H 1.08995 * 109.54064 * 176.80174 * 22 21 20 47 47 H 1.08996 * 109.51229 * 298.73881 * 24 23 22 48 48 H 1.09003 * 109.53978 * 178.63027 * 24 23 22 49 49 H 1.09004 * 109.50521 * 302.32965 * 25 20 19 50 50 H 1.08999 * 109.50737 * 62.41028 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0054 1.4453 2.1411 6 7 2.0188 3.3198 1.5238 7 6 1.6698 3.9769 2.7858 8 6 2.2110 5.3833 2.7863 9 1 2.7597 5.7511 1.9320 10 6 2.0057 6.2006 3.8777 11 7 1.3380 5.7525 4.9183 12 14 2.6760 7.9442 3.8781 13 1 3.3849 8.2023 2.5991 14 1 1.5540 8.9058 4.0256 15 1 3.6224 8.1103 5.0103 16 6 1.9955 -0.7660 -1.1376 17 6 3.5195 -0.8513 -1.0333 18 6 1.6118 -0.0678 -2.4438 19 6 1.4034 -2.1766 -1.1203 20 7 1.6128 -2.7795 0.2028 21 6 2.9028 -3.4818 0.2635 22 6 3.1067 -4.0423 1.6736 23 8 2.0088 -4.8969 2.0048 24 6 0.7369 -4.2450 1.9563 25 6 0.5090 -3.6867 0.5491 26 1 -0.3633 -1.0215 0.1123 27 1 -0.3634 0.6081 0.8284 28 1 -0.3633 0.4134 -0.9409 29 1 3.0797 1.3445 -0.1082 30 1 1.5611 1.9273 -0.8309 31 1 2.5242 3.8011 0.8500 32 1 0.5855 4.0044 2.8933 33 1 2.1034 3.4207 3.6170 34 1 1.1938 6.3274 5.6863 35 1 3.8620 -1.7876 -1.4741 36 1 3.9678 -0.0132 -1.5671 37 1 3.8147 -0.8140 0.0152 38 1 0.5261 -0.0070 -2.5180 39 1 2.0337 0.9373 -2.4561 40 1 2.0029 -0.6359 -3.2879 41 1 1.8943 -2.7861 -1.8791 42 1 0.3351 -2.1249 -1.3311 43 1 2.9064 -4.2995 -0.4571 44 1 3.7078 -2.7853 0.0288 45 1 3.1568 -3.2207 2.3882 46 1 4.0351 -4.6123 1.7086 47 1 0.7180 -3.4294 2.6790 48 1 -0.0492 -4.9613 2.1953 49 1 -0.4336 -3.1397 0.5228 50 1 0.4737 -4.5072 -0.1675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839673307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:30 Heat of formation + Delta-G solvation = -57.118833 kcal Electronic energy + Delta-G solvation = -27903.368588 eV Core-core repulsion = 24159.411893 eV Total energy + Delta-G solvation = -3743.956696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22722 -39.11655 -37.88701 -35.33692 -34.08110 -32.27963 -32.18978 -31.22498 -29.18987 -28.05178 -27.50779 -26.40418 -24.45671 -24.09671 -23.99060 -22.23412 -20.50476 -19.62163 -18.70798 -17.22186 -16.72866 -16.33644 -15.90698 -15.60937 -15.30530 -15.13604 -15.12500 -14.87653 -14.55043 -14.32069 -14.25939 -13.66671 -13.63628 -13.38382 -12.99539 -12.57790 -12.41054 -12.19932 -12.15211 -12.01131 -11.83321 -11.77940 -11.55438 -11.46099 -11.40533 -11.08322 -11.01828 -10.92053 -10.76782 -10.60393 -10.51169 -10.28387 -9.68686 -9.34329 -8.87122 -8.69878 -8.33229 -7.93330 -7.75880 -6.14125 -4.20619 3.24583 3.31596 3.34581 3.51015 3.54720 3.77673 3.86082 4.31690 4.54796 4.57032 4.70831 4.81047 4.90223 4.97949 5.05659 5.07169 5.20419 5.21913 5.30163 5.30490 5.36392 5.42692 5.45564 5.50262 5.52151 5.62149 5.67202 5.70199 5.71900 5.73489 5.75878 5.82992 5.90507 5.94525 6.01947 6.24122 6.43760 6.87080 6.89371 7.06190 7.20429 7.36675 7.42620 7.53552 7.57516 7.73033 8.01139 8.71442 8.84604 9.22742 9.46662 10.96107 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.002912 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.243665 B = 9614.482427 C =10301.768996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.484 5.484 3 C 0.031 3.969 4 C 0.499 3.501 5 O -0.536 6.536 6 N -0.718 5.718 7 C 0.252 3.748 8 C -0.541 4.541 9 H 0.062 0.938 10 C 0.063 3.937 11 N -0.885 5.885 12 Si 0.903 3.097 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.113 3.887 17 C -0.144 4.144 18 C -0.185 4.185 19 C 0.070 3.930 20 N -0.509 5.509 21 C 0.013 3.987 22 C 0.063 3.937 23 O -0.390 6.390 24 C 0.064 3.936 25 C 0.021 3.979 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.012 0.988 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.388 0.612 32 H 0.024 0.976 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.033 0.967 44 H 0.096 0.904 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 -18.211 -15.417 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.207 5.207 3 C -0.101 4.101 4 C 0.283 3.717 5 O -0.413 6.413 6 N -0.367 5.367 7 C 0.131 3.869 8 C -0.580 4.580 9 H 0.081 0.919 10 C -0.141 4.141 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.022 3.978 17 C -0.201 4.201 18 C -0.244 4.244 19 C -0.058 4.058 20 N -0.233 5.233 21 C -0.115 4.115 22 C -0.014 4.014 23 O -0.309 6.309 24 C -0.013 4.013 25 C -0.107 4.107 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.031 0.969 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.220 0.780 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.114 0.886 45 H 0.083 0.917 46 H 0.111 0.889 47 H 0.084 0.916 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.589 -18.638 -13.746 23.213 hybrid contribution 0.216 1.351 -1.774 2.241 sum 1.804 -17.287 -15.521 23.302 Atomic orbital electron populations 1.22549 0.87238 1.02450 1.00360 1.61851 1.08106 1.10644 1.40125 1.22073 1.01598 0.90367 0.96021 1.20335 0.80615 0.82255 0.88512 1.90630 1.39981 1.64189 1.46520 1.46453 1.55950 1.12643 1.21693 1.19049 0.96326 0.91412 0.80083 1.21276 1.36542 0.97287 1.02881 0.91937 1.24955 0.94995 0.98932 0.95180 1.69985 1.39663 1.36665 1.05962 0.86381 0.78698 0.83827 0.78111 1.19666 1.20844 1.20809 1.21071 0.95376 0.92957 0.88384 1.22093 0.93895 1.00942 1.03173 1.22555 1.02032 1.01425 0.98403 1.22230 1.00472 0.93940 0.89201 1.61992 1.01176 1.31788 1.28349 1.23069 0.93600 0.97239 0.97639 1.22662 0.89425 0.94334 0.94974 1.87939 1.15148 1.37668 1.90132 1.22642 0.85474 0.97434 0.95754 1.22798 0.95500 0.94978 0.97423 0.91701 0.89411 0.96923 0.88633 0.92899 0.78012 0.95761 0.95621 0.92546 0.92542 0.92877 0.90526 0.92267 0.91846 0.92236 0.93880 0.91174 0.94877 0.88625 0.91714 0.88937 0.91610 0.88886 0.89785 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.42 60.06 0.51 0.81 16 2 N -0.48 -6.66 3.91 -228.60 -0.89 -7.55 16 3 C 0.03 0.44 4.55 -4.97 -0.02 0.42 16 4 C 0.50 9.95 7.50 -10.98 -0.08 9.87 16 5 O -0.54 -12.85 14.35 5.56 0.08 -12.77 16 6 N -0.72 -15.16 5.55 -61.47 -0.34 -15.50 16 7 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 8 C -0.54 -14.77 9.28 -34.44 -0.32 -15.08 16 9 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 12 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.11 1.17 0.47 -131.60 -0.06 1.11 16 17 C -0.14 -1.37 6.24 37.16 0.23 -1.14 16 18 C -0.18 -1.67 7.61 37.16 0.28 -1.39 16 19 C 0.07 0.68 3.43 -3.83 -0.01 0.67 16 20 N -0.51 -5.55 4.05 -234.31 -0.95 -6.50 16 21 C 0.01 0.12 5.15 -3.71 -0.02 0.10 16 22 C 0.06 0.67 7.01 37.21 0.26 0.93 16 23 O -0.39 -4.73 10.83 -35.23 -0.38 -5.11 16 24 C 0.06 0.68 7.01 37.21 0.26 0.95 16 25 C 0.02 0.21 5.41 -3.71 -0.02 0.19 16 26 H 0.06 0.84 5.41 -51.93 -0.28 0.56 16 27 H 0.09 1.55 5.80 -51.93 -0.30 1.25 16 28 H 0.01 0.16 6.33 -51.93 -0.33 -0.17 16 29 H 0.10 1.23 6.60 -51.93 -0.34 0.89 16 30 H 0.05 0.69 6.85 -51.93 -0.36 0.33 16 31 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 32 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.06 0.46 6.47 -51.92 -0.34 0.12 16 36 H 0.05 0.46 7.53 -51.93 -0.39 0.07 16 37 H 0.08 0.87 7.42 -51.93 -0.39 0.49 16 38 H 0.06 0.55 6.48 -51.93 -0.34 0.22 16 39 H 0.06 0.58 6.59 -51.92 -0.34 0.24 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.37 7.56 -51.93 -0.39 -0.02 16 42 H 0.07 0.67 6.37 -51.93 -0.33 0.34 16 43 H 0.03 0.32 8.11 -51.93 -0.42 -0.10 16 44 H 0.10 0.89 4.60 -51.93 -0.24 0.65 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.08 0.81 7.13 -51.93 -0.37 0.44 16 50 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -32.61 374.40 -8.66 -41.27 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.41 Total: 4.34 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 0.88 Total: 5.80 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -1.45 Total: -55.07 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.30 Total: -17.88 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.61 -8.66 -41.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839673307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.854 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds