Wall clock time and date at job start Tue Mar 31 2020 10:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00003 * 2 1 4 4 C 1.50706 * 109.47023 * 66.04468 * 3 2 1 5 5 O 1.21283 * 119.99775 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00055 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00218 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.46962 * 179.97438 * 7 6 4 9 9 H 1.07992 * 120.00375 * 0.02562 * 8 7 6 10 10 C 1.37886 * 119.99487 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00213 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99754 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47226 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47318 * 120.00091 * 12 10 8 15 15 H 1.48498 * 109.47025 * 240.00254 * 12 10 8 16 16 C 1.46900 * 111.00273 * 236.04550 * 2 1 3 17 17 C 1.52997 * 109.47077 * 185.12983 * 16 2 1 18 18 C 1.53002 * 109.47023 * 65.12607 * 16 2 1 19 19 C 1.52996 * 109.47091 * 305.13108 * 16 2 1 20 20 N 1.46901 * 109.47233 * 307.69504 * 19 16 2 21 21 C 1.47010 * 110.99894 * 271.18220 * 20 19 16 22 22 C 1.53104 * 109.25772 * 177.60616 * 21 20 19 23 23 O 1.43020 * 109.25513 * 56.84855 * 22 21 20 24 24 C 1.43013 * 113.73699 * 301.32692 * 23 22 21 25 25 C 1.47014 * 111.00266 * 147.54620 * 20 19 16 26 26 H 1.08998 * 109.46987 * 186.27459 * 1 2 3 27 27 H 1.08998 * 109.47397 * 306.27983 * 1 2 3 28 28 H 1.08998 * 109.46806 * 66.28234 * 1 2 3 29 29 H 1.08998 * 109.47480 * 186.04357 * 3 2 1 30 30 H 1.08994 * 109.47053 * 306.04495 * 3 2 1 31 31 H 0.97005 * 120.00068 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.46882 * 300.00374 * 7 6 4 33 33 H 1.09009 * 109.46582 * 60.00105 * 7 6 4 34 34 H 0.97004 * 120.00167 * 179.97438 * 11 10 8 35 35 H 1.09009 * 109.46638 * 149.07070 * 17 16 2 36 36 H 1.09005 * 109.47267 * 269.06235 * 17 16 2 37 37 H 1.08990 * 109.47291 * 29.07199 * 17 16 2 38 38 H 1.09002 * 109.47417 * 300.00515 * 18 16 2 39 39 H 1.09008 * 109.47001 * 60.00201 * 18 16 2 40 40 H 1.09001 * 109.47132 * 179.97438 * 18 16 2 41 41 H 1.08999 * 109.47501 * 187.69508 * 19 16 2 42 42 H 1.09007 * 109.47293 * 67.69677 * 19 16 2 43 43 H 1.09001 * 109.50736 * 297.53455 * 21 20 19 44 44 H 1.09000 * 109.50876 * 57.67374 * 21 20 19 45 45 H 1.09003 * 109.50813 * 296.91613 * 22 21 20 46 46 H 1.08995 * 109.54064 * 176.80174 * 22 21 20 47 47 H 1.08996 * 109.51229 * 298.73881 * 24 23 22 48 48 H 1.09003 * 109.53978 * 178.63027 * 24 23 22 49 49 H 1.09004 * 109.50521 * 302.32965 * 25 20 19 50 50 H 1.08999 * 109.50737 * 62.41028 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0054 1.4453 2.1411 6 7 2.0188 3.3198 1.5238 7 6 1.6698 3.9769 2.7858 8 6 2.2110 5.3833 2.7863 9 1 2.7597 5.7511 1.9320 10 6 2.0057 6.2006 3.8777 11 7 1.3380 5.7525 4.9183 12 14 2.6760 7.9442 3.8781 13 1 3.3849 8.2023 2.5991 14 1 1.5540 8.9058 4.0256 15 1 3.6224 8.1103 5.0103 16 6 1.9955 -0.7660 -1.1376 17 6 3.5195 -0.8513 -1.0333 18 6 1.6118 -0.0678 -2.4438 19 6 1.4034 -2.1766 -1.1203 20 7 1.6128 -2.7795 0.2028 21 6 2.9028 -3.4818 0.2635 22 6 3.1067 -4.0423 1.6736 23 8 2.0088 -4.8969 2.0048 24 6 0.7369 -4.2450 1.9563 25 6 0.5090 -3.6867 0.5491 26 1 -0.3633 -1.0215 0.1123 27 1 -0.3634 0.6081 0.8284 28 1 -0.3633 0.4134 -0.9409 29 1 3.0797 1.3445 -0.1082 30 1 1.5611 1.9273 -0.8309 31 1 2.5242 3.8011 0.8500 32 1 0.5855 4.0044 2.8933 33 1 2.1034 3.4207 3.6170 34 1 1.1938 6.3274 5.6863 35 1 3.8620 -1.7876 -1.4741 36 1 3.9678 -0.0132 -1.5671 37 1 3.8147 -0.8140 0.0152 38 1 0.5261 -0.0070 -2.5180 39 1 2.0337 0.9373 -2.4561 40 1 2.0029 -0.6359 -3.2879 41 1 1.8943 -2.7861 -1.8791 42 1 0.3351 -2.1249 -1.3311 43 1 2.9064 -4.2995 -0.4571 44 1 3.7078 -2.7853 0.0288 45 1 3.1568 -3.2207 2.3882 46 1 4.0351 -4.6123 1.7086 47 1 0.7180 -3.4294 2.6790 48 1 -0.0492 -4.9613 2.1953 49 1 -0.4336 -3.1397 0.5228 50 1 0.4737 -4.5072 -0.1675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839673307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:29 Heat of formation + Delta-G solvation = -83.196532 kcal Electronic energy + Delta-G solvation = -27904.499402 eV Core-core repulsion = 24159.411893 eV Total energy + Delta-G solvation = -3745.087509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21350 -40.36108 -39.11848 -36.34144 -35.96064 -34.30622 -33.14846 -32.06357 -30.44678 -29.31696 -28.48697 -27.73583 -25.58191 -25.16385 -24.81180 -24.05890 -21.34189 -21.30368 -19.64874 -18.91521 -17.86131 -17.36526 -17.16529 -16.98664 -16.67020 -16.35913 -16.18957 -15.98414 -15.78248 -15.52517 -15.43936 -14.83471 -14.71096 -14.47939 -14.21324 -13.98600 -13.90042 -13.56310 -13.16415 -13.03100 -12.98805 -12.83643 -12.74711 -12.74246 -12.44859 -12.34462 -12.26949 -12.20900 -12.05963 -11.87276 -11.45120 -11.43280 -11.34450 -10.79743 -10.57929 -10.51940 -9.74258 -9.10398 -8.94533 -8.28022 -6.44507 1.43311 1.44611 1.58036 1.89441 2.31046 2.51082 2.80269 2.99238 3.06770 3.26087 3.79535 3.92514 4.00511 4.05244 4.14324 4.21499 4.26064 4.27126 4.32923 4.40644 4.42185 4.55364 4.61954 4.62902 4.68312 4.71901 4.75393 4.77594 4.84031 4.91877 5.00308 5.02236 5.05476 5.09762 5.14719 5.26095 5.27181 5.28927 5.47346 5.52901 5.75292 5.87883 6.07797 6.09728 6.19204 6.22177 6.47001 6.67656 7.02660 7.25477 7.61833 8.84409 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.002912 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.243665 B = 9614.482427 C =10301.768996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.504 5.504 3 C 0.048 3.952 4 C 0.494 3.506 5 O -0.581 6.581 6 N -0.713 5.713 7 C 0.270 3.730 8 C -0.554 4.554 9 H 0.084 0.916 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.985 3.015 13 H -0.252 1.252 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.113 3.887 17 C -0.141 4.141 18 C -0.180 4.180 19 C 0.071 3.929 20 N -0.531 5.531 21 C 0.018 3.982 22 C 0.060 3.940 23 O -0.405 6.405 24 C 0.062 3.938 25 C 0.026 3.974 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.406 0.594 32 H -0.016 1.016 33 H -0.017 1.017 34 H 0.268 0.732 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.102 0.898 45 H 0.042 0.958 46 H 0.113 0.887 47 H 0.041 0.959 48 H 0.112 0.888 49 H 0.085 0.915 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -17.991 -18.612 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.227 5.227 3 C -0.083 4.083 4 C 0.281 3.719 5 O -0.461 6.461 6 N -0.364 5.364 7 C 0.147 3.853 8 C -0.591 4.591 9 H 0.102 0.898 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.808 3.192 13 H -0.175 1.175 14 H -0.205 1.205 15 H -0.205 1.205 16 C 0.023 3.977 17 C -0.198 4.198 18 C -0.239 4.239 19 C -0.057 4.057 20 N -0.256 5.256 21 C -0.110 4.110 22 C -0.017 4.017 23 O -0.324 6.324 24 C -0.015 4.015 25 C -0.102 4.102 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.137 0.863 30 H 0.096 0.904 31 H 0.241 0.759 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.120 0.880 45 H 0.060 0.940 46 H 0.131 0.869 47 H 0.060 0.940 48 H 0.129 0.871 49 H 0.103 0.897 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.128 -18.433 -17.003 25.272 hybrid contribution -0.287 1.178 -0.746 1.423 sum 2.841 -17.255 -17.749 24.917 Atomic orbital electron populations 1.22356 0.87815 1.02120 0.99365 1.61784 1.07813 1.10359 1.42784 1.21943 1.03005 0.90731 0.92634 1.21431 0.79006 0.81450 0.90049 1.90618 1.41743 1.65090 1.48681 1.46201 1.56505 1.13395 1.20312 1.18457 0.93483 0.91861 0.81471 1.21659 1.36538 0.97238 1.03714 0.89823 1.26083 0.94997 1.04108 0.94534 1.70151 1.41173 1.38776 1.06944 0.85111 0.77957 0.77243 0.78894 1.17535 1.20490 1.20499 1.21200 0.95861 0.92856 0.87786 1.22073 0.93154 1.02523 1.02090 1.22505 1.01912 1.01543 0.97971 1.22253 1.00783 0.93619 0.89002 1.61971 1.01707 1.32468 1.29432 1.23034 0.93400 0.97526 0.97034 1.22765 0.89912 0.93919 0.95112 1.87916 1.15797 1.38285 1.90352 1.22705 0.85662 0.97222 0.95870 1.22739 0.95390 0.95161 0.96935 0.90945 0.93758 0.95150 0.86348 0.90437 0.75873 0.99818 0.99886 0.92313 0.90714 0.91681 0.92693 0.92592 0.91732 0.90224 0.92035 0.91055 0.93907 0.87975 0.93991 0.86933 0.94039 0.87050 0.89707 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 8.42 127.69 1.08 1.95 16 2 N -0.50 -13.31 3.91 -877.17 -3.43 -16.74 16 3 C 0.05 1.31 4.55 85.56 0.39 1.70 16 4 C 0.49 20.11 7.50 87.66 0.66 20.77 16 5 O -0.58 -29.45 14.35 -3.04 -0.04 -29.49 16 6 N -0.71 -30.61 5.55 -466.78 -2.59 -33.20 16 7 C 0.27 15.14 5.43 85.63 0.46 15.60 16 8 C -0.55 -30.45 9.28 25.60 0.24 -30.22 16 9 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 10 C 0.00 0.12 5.46 84.66 0.46 0.58 16 11 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 12 Si 0.98 42.63 29.54 68.60 2.03 44.65 16 13 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 14 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 16 C 0.11 2.04 0.47 3.53 0.00 2.04 16 17 C -0.14 -2.27 6.24 71.98 0.45 -1.82 16 18 C -0.18 -2.58 7.61 71.98 0.55 -2.03 16 19 C 0.07 1.20 3.43 86.30 0.30 1.50 16 20 N -0.53 -10.94 4.05 -895.21 -3.63 -14.56 16 21 C 0.02 0.32 5.15 86.32 0.44 0.77 16 22 C 0.06 1.24 7.01 72.02 0.50 1.75 16 23 O -0.40 -9.72 10.83 -148.98 -1.61 -11.33 16 24 C 0.06 1.34 7.01 72.01 0.50 1.85 16 25 C 0.03 0.50 5.41 86.31 0.47 0.97 16 26 H 0.07 1.86 5.41 -2.39 -0.01 1.85 16 27 H 0.04 1.63 5.80 -2.39 -0.01 1.62 16 28 H 0.03 0.72 6.33 -2.39 -0.02 0.70 16 29 H 0.12 2.75 6.60 -2.39 -0.02 2.73 16 30 H 0.08 1.79 6.85 -2.39 -0.02 1.78 16 31 H 0.41 14.30 8.32 -92.70 -0.77 13.53 16 32 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.07 0.93 6.47 -2.38 -0.02 0.92 16 36 H 0.06 0.89 7.53 -2.38 -0.02 0.87 16 37 H 0.05 1.15 7.42 -2.39 -0.02 1.13 16 38 H 0.06 0.85 6.48 -2.39 -0.02 0.84 16 39 H 0.06 0.93 6.59 -2.38 -0.02 0.91 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.83 7.56 -2.39 -0.02 0.82 16 42 H 0.07 1.19 6.37 -2.38 -0.02 1.17 16 43 H 0.04 0.71 8.11 -2.39 -0.02 0.69 16 44 H 0.10 1.70 4.60 -2.39 -0.01 1.69 16 45 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.08 1.59 7.13 -2.38 -0.02 1.58 16 50 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -74.66 374.40 -2.33 -76.99 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.16 Total: 24.97 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.50 Total: 15.40 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -9.36 Total: -121.19 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.66 Total: -40.82 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -74.66 -2.33 -76.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839673307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.211 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds