Wall clock time and date at job start Tue Mar 31 2020 10:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46806 * 2 1 4 4 C 1.53004 * 109.47000 * 240.00110 * 2 1 3 5 5 Si 1.86304 * 109.47277 * 119.99856 * 2 1 3 6 6 C 1.86295 * 109.47127 * 300.00105 * 5 2 1 7 7 C 1.86301 * 109.46762 * 179.97438 * 5 2 1 8 8 O 1.63103 * 109.46698 * 60.00255 * 5 2 1 9 9 C 1.42898 * 113.99619 * 179.97438 * 8 5 2 10 10 H 1.08999 * 109.53801 * 30.09633 * 9 8 5 11 11 C 1.53124 * 109.50233 * 270.00024 * 9 8 5 12 12 C 1.53126 * 109.15878 * 182.40634 * 11 9 8 13 13 C 1.53037 * 109.27801 * 57.65645 * 12 11 9 14 14 N 1.46854 * 109.51886 * 300.81620 * 13 12 11 15 15 C 1.46897 * 110.99665 * 185.84309 * 14 13 12 16 16 C 1.52998 * 109.47268 * 293.95495 * 15 14 13 17 17 C 1.50705 * 109.47560 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99702 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00373 * 179.97438 * 17 16 15 20 20 N 1.31522 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00167 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46798 * 60.00494 * 21 19 17 23 23 H 1.48502 * 109.47217 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46909 * 300.00534 * 21 19 17 25 25 C 1.46844 * 111.19703 * 61.74789 * 14 13 12 26 26 H 1.09006 * 109.47179 * 299.99571 * 1 2 3 27 27 H 1.08999 * 109.47846 * 60.00090 * 1 2 3 28 28 H 1.09006 * 109.47429 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46979 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47379 * 299.99979 * 3 2 1 31 31 H 1.08998 * 109.47065 * 60.00539 * 3 2 1 32 32 H 1.08997 * 109.47188 * 299.99653 * 4 2 1 33 33 H 1.08998 * 109.46713 * 59.99745 * 4 2 1 34 34 H 1.08996 * 109.46628 * 179.97438 * 4 2 1 35 35 H 1.09008 * 109.46491 * 179.97438 * 6 5 2 36 36 H 1.08997 * 109.47246 * 300.00037 * 6 5 2 37 37 H 1.09002 * 109.47252 * 60.00461 * 6 5 2 38 38 H 1.08995 * 109.47608 * 300.00083 * 7 5 2 39 39 H 1.09005 * 109.46953 * 60.00654 * 7 5 2 40 40 H 1.08999 * 109.46869 * 179.97438 * 7 5 2 41 41 H 1.08998 * 109.52745 * 62.49962 * 11 9 8 42 42 H 1.08999 * 109.52030 * 302.30418 * 11 9 8 43 43 H 1.09000 * 109.49775 * 177.59563 * 12 11 9 44 44 H 1.09002 * 109.50346 * 297.67261 * 12 11 9 45 45 H 1.08994 * 109.46593 * 60.83220 * 13 12 11 46 46 H 1.09004 * 109.46132 * 180.80891 * 13 12 11 47 47 H 1.08998 * 109.47712 * 53.95369 * 15 14 13 48 48 H 1.09003 * 109.47441 * 173.95685 * 15 14 13 49 49 H 1.08999 * 109.47139 * 300.00315 * 16 15 14 50 50 H 1.09004 * 109.47207 * 59.99992 * 16 15 14 51 51 H 0.96998 * 119.99926 * 179.97438 * 20 19 17 52 52 H 1.09002 * 109.46133 * 58.27161 * 25 14 13 53 53 H 1.09002 * 109.46165 * 178.24800 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8788 1.5206 8 8 1.6074 -2.4160 1.5211 9 6 2.0295 -3.1817 2.6513 10 1 2.1579 -2.5231 3.5104 11 6 3.3588 -3.8721 2.3334 12 6 3.7735 -4.7376 3.5266 13 6 2.6673 -5.7526 3.8232 14 7 1.4170 -5.0426 4.1218 15 6 0.3682 -5.9793 4.5465 16 6 -0.0028 -6.8938 3.3773 17 6 -1.0784 -7.8553 3.8131 18 1 -1.4595 -7.8175 4.8229 19 6 -1.5765 -8.7823 2.9224 20 7 -1.1127 -8.8279 1.6926 21 14 -2.9102 -9.9736 3.4625 22 1 -4.1091 -9.2114 3.8949 23 1 -3.2702 -10.8612 2.3277 24 1 -2.4112 -10.7954 4.5942 25 6 0.9739 -4.2418 2.9734 26 1 -0.3634 0.5138 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6765 -0.2074 -2.1392 34 1 3.1299 -0.7208 -1.2495 35 1 1.8931 -0.5142 3.9322 36 1 1.8933 1.0277 3.0423 37 1 0.4400 -0.0001 3.0423 38 1 4.3770 -1.3928 0.6307 39 1 4.3777 0.1488 1.5205 40 1 4.3774 -1.3922 2.4108 41 1 4.1245 -3.1194 2.1458 42 1 3.2407 -4.5009 1.4510 43 1 4.6975 -5.2651 3.2897 44 1 3.9300 -4.1034 4.3993 45 1 2.5216 -6.3952 2.9550 46 1 2.9532 -6.3610 4.6813 47 1 0.7342 -6.5824 5.3774 48 1 -0.5120 -5.4199 4.8636 49 1 -0.3689 -6.2908 2.5464 50 1 0.8773 -7.4532 3.0601 51 1 -1.4629 -9.4804 1.0661 52 1 0.8362 -4.8915 2.1091 53 1 0.0300 -3.7528 3.2143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844336421.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:42 Heat of formation + Delta-G solvation = -122.520613 kcal Electronic energy + Delta-G solvation = -25577.551688 eV Core-core repulsion = 22297.505749 eV Total energy + Delta-G solvation = -3280.045939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.218 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.43120 -37.62814 -36.79633 -35.39459 -33.96796 -30.98154 -30.49042 -29.24138 -29.05800 -27.79937 -27.41801 -26.79744 -24.68389 -23.71216 -22.38229 -20.46581 -20.29232 -18.61408 -17.70856 -16.91344 -16.59269 -16.07935 -15.86994 -15.53369 -15.28984 -14.86532 -14.77561 -14.63818 -14.49812 -14.32282 -14.02636 -13.91797 -13.52836 -13.46082 -13.36354 -13.22051 -12.94201 -12.92383 -12.86195 -12.82140 -12.67846 -12.56476 -12.36839 -12.33682 -11.96441 -11.78937 -11.70155 -11.64977 -11.55665 -11.54024 -11.33582 -11.08588 -10.94321 -10.54981 -10.21306 -9.99289 -9.14083 -8.21199 -6.33880 1.38116 1.41576 1.49398 1.55193 1.84272 2.19129 2.38969 2.54602 3.11002 3.20340 3.84166 3.91330 4.03894 4.16263 4.16580 4.23324 4.30062 4.51673 4.53874 4.59763 4.63967 4.71544 4.80634 4.82247 4.84139 4.85362 4.86259 4.88876 4.92027 4.97121 5.02287 5.03343 5.07227 5.09831 5.11736 5.13320 5.15733 5.25142 5.36394 5.38627 5.44008 5.47539 5.51861 5.55699 5.65035 5.67050 5.71086 5.76247 6.01796 6.27111 6.32889 6.83856 7.35512 8.89626 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.017278 B = 0.003232 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.140463 B = 8660.614842 C = 9441.846395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.374 4.374 3 C -0.136 4.136 4 C -0.136 4.136 5 Si 1.278 2.722 6 C -0.511 4.511 7 C -0.505 4.505 8 O -0.646 6.646 9 C 0.130 3.870 10 H 0.083 0.917 11 C -0.156 4.156 12 C -0.106 4.106 13 C 0.044 3.956 14 N -0.527 5.527 15 C 0.071 3.929 16 C 0.002 3.998 17 C -0.543 4.543 18 H 0.064 0.936 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.265 1.265 25 C 0.054 3.946 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.010 0.990 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.065 0.935 49 H -0.011 1.011 50 H -0.010 1.010 51 H 0.263 0.737 52 H 0.015 0.985 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.730 21.013 -0.244 24.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.418 4.418 3 C -0.193 4.193 4 C -0.193 4.193 5 Si 1.411 2.589 6 C -0.613 4.613 7 C -0.608 4.608 8 O -0.605 6.605 9 C 0.074 3.926 10 H 0.100 0.900 11 C -0.194 4.194 12 C -0.144 4.144 13 C -0.084 4.084 14 N -0.252 5.252 15 C -0.057 4.057 16 C -0.037 4.037 17 C -0.581 4.581 18 H 0.082 0.918 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.189 1.189 25 C -0.075 4.075 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.028 0.972 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.007 0.993 50 H 0.008 0.992 51 H 0.071 0.929 52 H 0.033 0.967 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.641 21.073 -0.166 24.075 hybrid contribution -1.149 -1.350 -0.930 2.002 sum 10.492 19.723 -1.096 22.367 Atomic orbital electron populations 1.21544 0.94744 1.01189 1.02042 1.25751 0.99987 1.03550 1.12495 1.21575 1.01522 0.93795 1.02408 1.21530 1.01273 0.99509 0.97023 0.76926 0.64261 0.52720 0.64976 1.27009 1.06530 1.09967 1.17762 1.27072 1.23499 1.05462 1.04785 1.85333 1.79764 1.47260 1.48116 1.21423 0.92576 0.92183 0.86464 0.89977 1.22420 0.97359 1.00607 0.98996 1.21555 0.97102 0.97242 0.98460 1.22221 0.90404 0.96129 0.99621 1.62331 1.04388 1.24445 1.34002 1.22102 0.93506 0.92808 0.97297 1.19514 0.95094 0.94379 0.94686 1.21608 1.21321 1.17076 0.98140 0.91811 1.26015 0.99437 0.99578 0.94855 1.70116 1.44532 1.36974 1.05763 0.85481 0.79133 0.78437 0.77880 1.19111 1.20996 1.18935 1.22071 0.98366 0.95073 0.91950 0.91981 0.92654 0.93916 0.91280 0.92683 0.91663 0.93868 0.92753 0.91545 0.91309 0.89430 0.91726 0.90930 0.89434 0.90518 0.87943 0.92869 0.89265 0.89328 0.97179 0.90220 0.91023 0.91685 0.99268 0.99191 0.92878 0.96692 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.85 71.98 0.56 -2.23 16 2 C -0.37 -6.74 0.53 -10.79 -0.01 -6.75 16 3 C -0.14 -1.86 7.85 71.98 0.56 -1.29 16 4 C -0.14 -2.61 7.85 71.98 0.56 -2.04 16 5 Si 1.28 23.71 8.07 68.60 0.55 24.27 16 6 C -0.51 -9.15 8.56 113.37 0.97 -8.18 16 7 C -0.51 -7.72 7.45 113.37 0.84 -6.87 16 8 O -0.65 -17.82 8.28 -148.98 -1.23 -19.05 16 9 C 0.13 3.70 2.31 30.65 0.07 3.77 16 10 H 0.08 1.99 6.16 -2.39 -0.01 1.97 16 11 C -0.16 -3.98 5.37 30.68 0.16 -3.82 16 12 C -0.11 -2.59 6.09 30.65 0.19 -2.40 16 13 C 0.04 1.49 5.05 86.32 0.44 1.92 16 14 N -0.53 -19.37 4.86 -896.36 -4.35 -23.73 16 15 C 0.07 3.03 5.30 86.30 0.46 3.49 16 16 C 0.00 0.09 4.27 29.85 0.13 0.21 16 17 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 18 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 19 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 20 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 21 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.05 2.01 4.49 86.33 0.39 2.40 16 26 H 0.06 1.12 7.79 -2.38 -0.02 1.10 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 1.02 7.97 -2.38 -0.02 1.00 16 29 H 0.07 0.75 7.79 -2.38 -0.02 0.74 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.76 7.79 -2.39 -0.02 0.74 16 32 H 0.04 0.98 7.96 -2.39 -0.02 0.96 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.07 7.79 -2.39 -0.02 1.05 16 35 H 0.07 1.24 7.10 -2.38 -0.02 1.23 16 36 H 0.09 1.23 7.79 -2.39 -0.02 1.21 16 37 H 0.06 1.26 7.79 -2.39 -0.02 1.24 16 38 H 0.07 1.13 7.79 -2.39 -0.02 1.11 16 39 H 0.09 1.04 7.79 -2.38 -0.02 1.02 16 40 H 0.08 1.13 6.41 -2.39 -0.02 1.11 16 41 H 0.10 2.00 4.85 -2.39 -0.01 1.99 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.01 0.40 6.75 -2.39 -0.02 0.38 16 46 H 0.08 2.51 8.06 -2.39 -0.02 2.49 16 47 H 0.07 2.94 8.06 -2.39 -0.02 2.92 16 48 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 49 H -0.01 -0.66 6.51 -2.39 -0.02 -0.67 16 50 H -0.01 -0.60 6.68 -2.38 -0.02 -0.62 16 51 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 52 H 0.01 0.67 6.61 -2.39 -0.02 0.65 16 53 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 Total: -1.00 -67.96 399.52 4.13 -63.83 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.83 Total: 18.41 kcal Atomic # 6 Polarization: -58.70 SS G_CDS: 6.03 Total: -52.67 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -4.07 Total: -81.84 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.23 Total: -19.05 kcal Atomic # 14 Polarization: 68.74 SS G_CDS: 2.58 Total: 71.32 kcal Total: -67.96 4.13 -63.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844336421.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.694 kcal (2) G-P(sol) polarization free energy of solvation -67.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds