Wall clock time and date at job start Tue Mar 31 2020 10:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99868 * 2 1 4 4 C 1.53007 * 109.46938 * 199.88076 * 3 2 1 5 5 O 1.42893 * 109.46887 * 65.15603 * 4 3 2 6 6 Si 1.63110 * 113.99717 * 179.97438 * 5 4 3 7 7 C 1.86300 * 109.46799 * 60.00320 * 6 5 4 8 8 C 1.86298 * 109.47363 * 300.00374 * 6 5 4 9 9 C 1.86297 * 109.46898 * 180.02562 * 6 5 4 10 10 C 1.53003 * 109.47395 * 299.99909 * 9 6 5 11 11 C 1.53000 * 109.46949 * 180.02562 * 9 6 5 12 12 C 1.53000 * 109.47458 * 60.00332 * 9 6 5 13 13 C 1.46901 * 110.99874 * 123.95273 * 2 1 3 14 14 H 1.08995 * 110.01686 * 186.11044 * 13 2 1 15 15 C 1.53876 * 110.02916 * 307.49886 * 13 2 1 16 16 C 1.54267 * 106.59652 * 119.28770 * 15 13 2 17 17 C 1.54892 * 104.19832 * 23.60790 * 16 15 13 18 18 C 1.50697 * 110.75507 * 203.74605 * 17 16 15 19 19 N 1.27940 * 120.00505 * 93.54986 * 18 17 16 20 20 Si 1.86805 * 120.00008 * 273.54046 * 18 17 16 21 21 H 1.48503 * 109.46595 * 60.00440 * 20 18 17 22 22 H 1.48500 * 109.47193 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47187 * 300.00750 * 20 18 17 24 24 C 1.54260 * 110.03546 * 64.66536 * 13 2 1 25 25 H 1.09003 * 109.47278 * 66.34192 * 1 2 3 26 26 H 1.09002 * 109.47051 * 186.34071 * 1 2 3 27 27 H 1.09003 * 109.47544 * 306.33994 * 1 2 3 28 28 H 1.08997 * 109.47428 * 79.88342 * 3 2 1 29 29 H 1.09001 * 109.46960 * 319.87732 * 3 2 1 30 30 H 1.09001 * 109.46534 * 305.15599 * 4 3 2 31 31 H 1.09001 * 109.47090 * 185.15582 * 4 3 2 32 32 H 1.08997 * 109.47136 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47484 * 300.00004 * 7 6 5 34 34 H 1.09002 * 109.46766 * 59.99796 * 7 6 5 35 35 H 1.09004 * 109.46657 * 300.00081 * 8 6 5 36 36 H 1.09002 * 109.46796 * 59.99531 * 8 6 5 37 37 H 1.08997 * 109.46836 * 179.97438 * 8 6 5 38 38 H 1.09003 * 109.47316 * 300.00744 * 10 9 6 39 39 H 1.09010 * 109.46797 * 60.00238 * 10 9 6 40 40 H 1.09000 * 109.47618 * 180.02562 * 10 9 6 41 41 H 1.09002 * 109.47598 * 180.02562 * 11 9 6 42 42 H 1.09001 * 109.47236 * 299.99531 * 11 9 6 43 43 H 1.09000 * 109.47554 * 60.00223 * 11 9 6 44 44 H 1.09000 * 109.46840 * 299.99752 * 12 9 6 45 45 H 1.08992 * 109.46675 * 59.99856 * 12 9 6 46 46 H 1.09000 * 109.47271 * 180.02562 * 12 9 6 47 47 H 1.08998 * 110.03359 * 238.56927 * 15 13 2 48 48 H 1.08998 * 110.03570 * 0.02562 * 15 13 2 49 49 H 1.09000 * 110.49011 * 142.29009 * 16 15 13 50 50 H 1.09004 * 110.48902 * 264.79556 * 16 15 13 51 51 H 1.08994 * 110.75449 * 80.55730 * 17 16 15 52 52 H 0.97000 * 120.00545 * 179.97438 * 19 18 17 53 53 H 1.09002 * 110.48599 * 335.78694 * 24 13 2 54 54 H 1.09004 * 110.48941 * 98.42446 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4447 1.3614 -0.4906 5 8 3.4820 0.9454 -1.8571 6 14 4.9825 0.8960 -2.4947 7 6 6.0294 -0.3029 -1.5263 8 6 5.7473 2.5929 -2.4154 9 6 4.8846 0.3419 -4.2707 10 6 4.2564 -1.0516 -4.3364 11 6 6.2922 0.2949 -4.8685 12 6 4.0251 1.3269 -5.0656 13 6 1.9954 -0.7660 1.1376 14 1 3.0798 -0.6663 1.1847 15 6 1.3627 -0.2655 2.4479 16 6 0.6107 -1.4651 3.0605 17 6 1.3126 -2.7045 2.4517 18 6 0.3933 -3.8985 2.4638 19 7 -0.3238 -4.1643 1.4381 20 14 0.3008 -4.9908 3.9764 21 1 -0.1424 -4.1850 5.1424 22 1 -0.6695 -6.0889 3.7355 23 1 1.6411 -5.5670 4.2536 24 6 1.6058 -2.2522 0.9997 25 1 -0.3634 0.4124 -0.9413 26 1 -0.3633 -1.0214 0.1135 27 1 -0.3634 0.6090 0.8278 28 1 1.9571 1.7753 1.0116 29 1 1.3919 1.9922 -0.6623 30 1 4.0287 0.6693 0.1161 31 1 3.8644 2.3636 -0.4042 32 1 7.0320 -0.3363 -1.9526 33 1 6.0866 0.0216 -0.4873 34 1 5.5819 -1.2957 -1.5727 35 1 5.1347 3.2943 -2.9819 36 1 5.8044 2.9174 -1.3763 37 1 6.7502 2.5596 -2.8410 38 1 4.8688 -1.7533 -3.7700 39 1 3.2536 -1.0185 -3.9103 40 1 4.1995 -1.3760 -5.3754 41 1 6.2350 -0.0288 -5.9078 42 1 6.7402 1.2875 -4.8218 43 1 6.9043 -0.4071 -4.3022 44 1 3.0223 1.3600 -4.6395 45 1 4.4727 2.3195 -5.0188 46 1 3.9674 1.0025 -6.1046 47 1 2.1400 0.0762 3.1313 48 1 0.6647 0.5454 2.2397 49 1 0.7112 -1.4646 4.1458 50 1 -0.4413 -1.4418 2.7758 51 1 2.2373 -2.9253 2.9847 52 1 -0.9153 -4.9331 1.4458 53 1 0.7152 -2.3572 0.3801 54 1 2.4326 -2.8261 0.5810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844345150.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:06 Heat of formation + Delta-G solvation = -62.623584 kcal Electronic energy + Delta-G solvation = -26185.049479 eV Core-core repulsion = 22893.945132 eV Total energy + Delta-G solvation = -3291.104348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.226 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60249 -38.16150 -36.83361 -36.74007 -34.67323 -30.40311 -29.55315 -29.28764 -29.07157 -28.99615 -27.80321 -27.33826 -25.63392 -23.24159 -23.00039 -20.40630 -20.05034 -19.81457 -17.85081 -17.59153 -17.16939 -16.70694 -16.06140 -15.92274 -15.45870 -14.97251 -14.87137 -14.76392 -14.70017 -14.54161 -14.20563 -13.99507 -13.88698 -13.48693 -13.35627 -13.29406 -13.17160 -13.12889 -12.91732 -12.89981 -12.80112 -12.59042 -12.43179 -12.36858 -12.35644 -12.16525 -11.98548 -11.96002 -11.67880 -11.65409 -11.46327 -11.35293 -11.25509 -11.13638 -10.96254 -10.18054 -9.99452 -9.71093 -8.97449 0.89279 1.14895 1.44865 1.66661 1.80313 1.88300 1.89231 2.21809 2.58830 3.08460 3.51817 3.77916 4.01310 4.10753 4.16389 4.16735 4.21359 4.34106 4.42831 4.50162 4.53475 4.59133 4.60155 4.67338 4.72829 4.77879 4.78193 4.80459 4.82134 4.83595 4.84350 4.85023 4.86438 4.87039 4.99009 5.03359 5.05705 5.11182 5.12495 5.12538 5.18222 5.24561 5.27202 5.36008 5.37548 5.44491 5.48651 5.49162 5.60271 5.63518 5.68113 5.73890 6.28082 6.41686 7.00562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.534 5.534 3 C 0.048 3.952 4 C 0.084 3.916 5 O -0.625 6.625 6 Si 1.315 2.685 7 C -0.515 4.515 8 C -0.517 4.517 9 C -0.383 4.383 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.134 4.134 13 C 0.074 3.926 14 H 0.087 0.913 15 C -0.155 4.155 16 C -0.105 4.105 17 C -0.073 4.073 18 C 0.003 3.997 19 N -0.653 5.653 20 Si 0.968 3.032 21 H -0.238 1.238 22 H -0.267 1.267 23 H -0.242 1.242 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.058 0.942 51 H 0.113 0.887 52 H 0.339 0.661 53 H 0.079 0.921 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.381 1.256 4.567 4.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.257 5.257 3 C -0.080 4.080 4 C 0.008 3.992 5 O -0.585 6.585 6 Si 1.444 2.556 7 C -0.616 4.616 8 C -0.619 4.619 9 C -0.425 4.425 10 C -0.190 4.190 11 C -0.197 4.197 12 C -0.192 4.192 13 C -0.034 4.034 14 H 0.105 0.895 15 C -0.194 4.194 16 C -0.144 4.144 17 C -0.092 4.092 18 C -0.245 4.245 19 N -0.266 5.266 20 Si 0.785 3.215 21 H -0.161 1.161 22 H -0.191 1.191 23 H -0.165 1.165 24 C -0.140 4.140 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.102 0.898 50 H 0.077 0.923 51 H 0.131 0.869 52 H 0.156 0.844 53 H 0.097 0.903 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.087 0.898 3.824 4.075 hybrid contribution -0.157 -0.244 0.551 0.623 sum 0.930 0.654 4.375 4.521 Atomic orbital electron populations 1.22386 0.87676 1.01897 1.00379 1.62088 1.07627 1.13606 1.42355 1.22298 0.95783 0.89800 1.00087 1.22198 0.97143 0.99081 0.80786 1.85398 1.58804 1.85694 1.28605 0.76219 0.52244 0.64439 0.62714 1.27083 1.11421 1.13135 1.09948 1.27108 1.08397 1.21762 1.04589 1.25937 0.97784 0.99634 1.19153 1.21491 1.00540 0.95648 1.01320 1.21600 0.95073 1.02191 1.00854 1.21511 0.99464 0.98602 0.99582 1.22516 0.99456 0.93642 0.87819 0.89454 1.22827 1.00415 0.98292 0.97841 1.22264 0.98969 0.92577 1.00636 1.21564 0.97828 0.92054 0.97787 1.30351 0.93538 0.99729 1.00872 1.68188 1.06947 1.21578 1.29873 0.85267 0.81649 0.77807 0.76815 1.16065 1.19054 1.16454 1.22352 1.01963 0.93770 0.95922 0.92187 0.91481 0.94983 0.92000 0.90540 0.92149 0.91097 0.90736 0.91090 0.91544 0.91276 0.90986 0.90642 0.92401 0.92788 0.93626 0.93283 0.91803 0.91931 0.92700 0.92097 0.93560 0.90237 0.91499 0.89825 0.92290 0.86909 0.84431 0.90279 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 8.69 127.69 1.11 1.16 16 2 N -0.53 -1.05 4.62 -892.78 -4.12 -5.17 16 3 C 0.05 -0.03 5.18 86.31 0.45 0.42 16 4 C 0.08 -0.10 5.32 71.98 0.38 0.28 16 5 O -0.63 -1.45 8.51 -148.98 -1.27 -2.72 16 6 Si 1.32 -1.09 8.45 68.60 0.58 -0.51 16 7 C -0.51 0.22 8.50 113.37 0.96 1.18 16 8 C -0.52 0.57 8.50 113.37 0.96 1.53 16 9 C -0.38 -0.61 0.53 -10.79 -0.01 -0.61 16 10 C -0.13 -0.46 7.85 71.98 0.56 0.11 16 11 C -0.14 -0.06 7.85 71.98 0.56 0.50 16 12 C -0.13 -0.34 7.85 71.98 0.56 0.23 16 13 C 0.07 -0.03 2.87 45.64 0.13 0.10 16 14 H 0.09 -0.13 6.62 -2.39 -0.02 -0.15 16 15 C -0.15 0.49 5.21 31.32 0.16 0.65 16 16 C -0.11 0.32 6.23 31.67 0.20 0.52 16 17 C -0.07 0.15 2.82 -10.25 -0.03 0.12 16 18 C 0.00 0.00 4.92 88.67 0.44 0.43 16 19 N -0.65 -1.63 12.35 24.11 0.30 -1.33 16 20 Si 0.97 -2.81 29.57 68.60 2.03 -0.78 16 21 H -0.24 0.63 7.11 99.48 0.71 1.33 16 22 H -0.27 0.09 7.11 99.48 0.71 0.80 16 23 H -0.24 0.51 7.11 99.48 0.71 1.22 16 24 C -0.10 -0.15 5.51 31.67 0.17 0.02 16 25 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.07 0.27 5.97 -2.39 -0.01 0.26 16 27 H 0.03 0.01 6.31 -2.39 -0.02 0.00 16 28 H 0.06 -0.22 6.91 -2.39 -0.02 -0.23 16 29 H 0.08 0.05 7.94 -2.39 -0.02 0.03 16 30 H 0.06 -0.18 5.76 -2.39 -0.01 -0.20 16 31 H 0.07 -0.34 7.21 -2.39 -0.02 -0.36 16 32 H 0.07 -0.08 7.79 -2.39 -0.02 -0.10 16 33 H 0.07 -0.12 7.48 -2.39 -0.02 -0.14 16 34 H 0.07 0.08 7.79 -2.39 -0.02 0.06 16 35 H 0.07 -0.02 7.79 -2.38 -0.02 -0.04 16 36 H 0.07 -0.17 7.48 -2.39 -0.02 -0.19 16 37 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 38 H 0.06 0.13 7.80 -2.39 -0.02 0.11 16 39 H 0.05 0.28 7.97 -2.38 -0.02 0.26 16 40 H 0.04 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.06 -0.09 7.79 -2.39 -0.02 -0.10 16 43 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 44 H 0.05 0.20 7.97 -2.39 -0.02 0.18 16 45 H 0.06 0.04 7.79 -2.39 -0.02 0.02 16 46 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 48 H 0.07 -0.14 5.34 -2.39 -0.01 -0.15 16 49 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 50 H 0.06 -0.04 8.04 -2.38 -0.02 -0.06 16 51 H 0.11 -0.66 7.93 -2.39 -0.02 -0.68 16 52 H 0.34 0.05 8.23 -92.71 -0.76 -0.72 16 53 H 0.08 0.45 4.97 -2.39 -0.01 0.44 16 54 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 Total: 0.00 -7.76 404.09 4.97 -2.79 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 0.82 Total: 1.08 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.63 Total: 6.64 kcal Atomic # 7 Polarization: -2.68 SS G_CDS: -3.83 Total: -6.51 kcal Atomic # 8 Polarization: -1.45 SS G_CDS: -1.27 Total: -2.72 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: 2.61 Total: -1.29 kcal Total: -7.76 4.97 -2.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844345150.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.833 kcal (2) G-P(sol) polarization free energy of solvation -7.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds