Wall clock time and date at job start Tue Mar 31 2020 10:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46637 * 2 1 4 4 C 1.52996 * 109.47116 * 240.00305 * 2 1 3 5 5 Si 1.86301 * 109.47439 * 119.99762 * 2 1 3 6 6 C 1.86299 * 109.47231 * 300.00445 * 5 2 1 7 7 C 1.86302 * 109.47015 * 179.97438 * 5 2 1 8 8 O 1.63097 * 109.46701 * 60.00447 * 5 2 1 9 9 C 1.42898 * 113.99992 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47406 * 180.02562 * 9 8 5 11 11 H 1.09003 * 109.87934 * 171.88578 * 10 9 8 12 12 C 1.54313 * 110.02773 * 50.76525 * 10 9 8 13 13 C 1.55136 * 103.02247 * 218.23865 * 12 10 9 14 14 C 1.54909 * 101.65516 * 35.64990 * 13 12 10 15 15 N 1.47445 * 109.88583 * 292.91476 * 10 9 8 16 16 C 1.46900 * 111.00067 * 356.31046 * 15 10 9 17 17 C 1.52999 * 109.47239 * 177.04532 * 16 15 10 18 18 C 1.50705 * 109.47083 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00212 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99878 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00009 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00033 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47090 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47223 * 119.99701 * 22 20 18 25 25 H 1.48496 * 109.47163 * 239.99819 * 22 20 18 26 26 H 1.08996 * 109.46900 * 299.99561 * 1 2 3 27 27 H 1.08993 * 109.47356 * 60.00205 * 1 2 3 28 28 H 1.09001 * 109.46760 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46693 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47124 * 300.00075 * 3 2 1 31 31 H 1.08996 * 109.47117 * 60.00572 * 3 2 1 32 32 H 1.09001 * 109.47003 * 299.99480 * 4 2 1 33 33 H 1.09003 * 109.47312 * 59.99516 * 4 2 1 34 34 H 1.09003 * 109.47479 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.47133 * 179.97438 * 6 5 2 36 36 H 1.09001 * 109.47026 * 299.99864 * 6 5 2 37 37 H 1.09000 * 109.46851 * 59.99659 * 6 5 2 38 38 H 1.08996 * 109.47187 * 300.00593 * 7 5 2 39 39 H 1.09001 * 109.46897 * 60.00348 * 7 5 2 40 40 H 1.09003 * 109.47001 * 180.02562 * 7 5 2 41 41 H 1.08998 * 109.47689 * 59.99478 * 9 8 5 42 42 H 1.09008 * 109.46947 * 299.99536 * 9 8 5 43 43 H 1.08999 * 110.70253 * 336.61974 * 12 10 9 44 44 H 1.09000 * 110.70967 * 99.85113 * 12 10 9 45 45 H 1.08995 * 110.99136 * 277.55977 * 13 12 10 46 46 H 1.09005 * 111.02756 * 153.75572 * 13 12 10 47 47 H 1.08997 * 110.37830 * 204.09967 * 14 13 12 48 48 H 1.09007 * 110.46422 * 81.80660 * 14 13 12 49 49 H 1.08998 * 109.47268 * 297.04591 * 16 15 10 50 50 H 1.09001 * 109.46845 * 57.04596 * 16 15 10 51 51 H 1.09004 * 109.47169 * 299.99766 * 17 16 15 52 52 H 1.08995 * 109.47560 * 59.99690 * 17 16 15 53 53 H 0.96998 * 120.00384 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8781 1.5211 6 6 1.5301 0.0000 3.0423 7 6 4.0141 -0.8788 1.5206 8 8 1.6075 -2.4159 1.5211 9 6 2.0287 -3.1813 2.6519 10 6 1.4641 -4.5994 2.5469 11 1 1.8952 -5.2286 3.3256 12 6 1.7801 -5.1926 1.1578 13 6 0.4922 -5.9870 0.8158 14 6 -0.6048 -5.0876 1.4381 15 7 -0.0036 -4.5662 2.6841 16 6 -0.4753 -3.2040 2.9664 17 6 -2.0040 -3.1963 3.0288 18 6 -2.4879 -1.7986 3.3178 19 1 -1.7764 -0.9962 3.4447 20 6 -3.8392 -1.5445 3.4212 21 7 -4.7057 -2.5217 3.2672 22 14 -4.4390 0.1877 3.7801 23 1 -3.2731 1.0983 3.9099 24 1 -5.3081 0.6508 2.6686 25 1 -5.2126 0.1910 5.0477 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.8931 -0.5141 3.9323 36 1 1.8933 1.0277 3.0423 37 1 0.4401 -0.0001 3.0422 38 1 4.3770 -1.3928 0.6306 39 1 4.3778 0.1488 1.5204 40 1 4.3775 -1.3930 2.4104 41 1 1.6640 -2.7112 3.5652 42 1 3.1177 -3.2251 2.6757 43 1 1.9485 -4.3994 0.4294 44 1 2.6413 -5.8586 1.2100 45 1 0.5037 -6.9704 1.2855 46 1 0.3608 -6.0733 -0.2629 47 1 -1.4949 -5.6752 1.6631 48 1 -0.8529 -4.2674 0.7643 49 1 -0.0710 -2.8702 3.9220 50 1 -0.1406 -2.5325 2.1758 51 1 -2.4084 -3.5300 2.0732 52 1 -2.3388 -3.8678 3.8194 53 1 -5.6564 -2.3430 3.3396 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844347157.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:45 Heat of formation + Delta-G solvation = -93.299168 kcal Electronic energy + Delta-G solvation = -26793.648101 eV Core-core repulsion = 23514.869299 eV Total energy + Delta-G solvation = -3278.778802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.218 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.36061 -35.97381 -35.78775 -33.51565 -31.65360 -29.89762 -28.42415 -28.15054 -27.99073 -26.88533 -26.33085 -24.55972 -24.15980 -21.61619 -20.24187 -19.42269 -18.73868 -16.92505 -16.30994 -15.36340 -15.27847 -14.81773 -14.59763 -14.25498 -13.97366 -13.85872 -13.69211 -13.45926 -12.97035 -12.63396 -12.53560 -12.47153 -12.30843 -12.18551 -12.07322 -12.01802 -11.83891 -11.82200 -11.40372 -11.27525 -11.08909 -10.90189 -10.79154 -10.75569 -10.61123 -10.57929 -10.44598 -10.40731 -10.25626 -10.02250 -9.73422 -9.20287 -9.11824 -9.03400 -8.98155 -8.26791 -7.35935 -5.92361 -3.93241 2.56460 2.80652 3.11721 3.33736 3.41482 3.44630 3.55944 4.48398 4.68062 5.04201 5.11358 5.13077 5.16854 5.30707 5.41899 5.44056 5.44964 5.55788 5.58976 5.59344 5.69486 5.70745 5.82946 5.85859 5.87337 5.93064 5.95770 6.04771 6.10306 6.13318 6.16833 6.19022 6.25978 6.31128 6.33925 6.40181 6.44627 6.45359 6.61877 6.65513 6.68691 6.74541 6.80514 6.93503 7.20855 7.69636 7.74430 7.91882 8.02606 8.21641 8.55107 9.14958 9.69611 11.19324 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.006321 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.681848 B = 4428.323059 C = 6170.472062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.372 4.372 3 C -0.134 4.134 4 C -0.130 4.130 5 Si 1.276 2.724 6 C -0.510 4.510 7 C -0.507 4.507 8 O -0.609 6.609 9 C 0.069 3.931 10 C 0.070 3.930 11 H 0.085 0.915 12 C -0.132 4.132 13 C -0.130 4.130 14 C 0.054 3.946 15 N -0.523 5.523 16 C 0.037 3.963 17 C 0.024 3.976 18 C -0.512 4.512 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.884 3.116 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.050 0.950 49 H 0.051 0.949 50 H 0.067 0.933 51 H 0.016 0.984 52 H 0.017 0.983 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.666 0.909 -6.434 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.416 4.416 3 C -0.191 4.191 4 C -0.187 4.187 5 Si 1.407 2.593 6 C -0.612 4.612 7 C -0.608 4.608 8 O -0.569 6.569 9 C -0.007 4.007 10 C -0.039 4.039 11 H 0.102 0.898 12 C -0.170 4.170 13 C -0.168 4.168 14 C -0.074 4.074 15 N -0.247 5.247 16 C -0.089 4.089 17 C -0.013 4.013 18 C -0.551 4.551 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.712 3.288 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.084 0.916 51 H 0.034 0.966 52 H 0.036 0.964 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.175 0.386 -6.146 18.246 hybrid contribution -0.051 2.009 -0.217 2.021 sum 17.124 2.395 -6.363 18.424 Atomic orbital electron populations 1.21487 0.92939 1.02879 1.01691 1.25745 1.01240 1.02091 1.12483 1.21540 1.00142 0.95477 1.01944 1.21479 0.99931 1.00427 0.96835 0.76881 0.62205 0.54937 0.65294 1.27036 1.08417 1.08358 1.17399 1.27021 1.25713 1.04065 1.04013 1.85545 1.77767 1.45670 1.47886 1.22535 0.97036 0.93396 0.87756 1.22610 0.90752 0.93436 0.97081 0.89760 1.22728 0.97414 0.99351 0.97553 1.22692 0.95402 0.98762 0.99985 1.22892 0.96837 0.97229 0.90463 1.63837 1.02812 1.24841 1.33209 1.22891 0.99236 0.87017 0.99775 1.19139 0.88240 0.96576 0.97358 1.21225 0.91511 0.94545 1.47790 0.92781 1.24967 0.97083 0.96517 0.95702 1.69981 1.01595 1.31185 1.50611 0.86670 0.78890 0.85391 0.77880 1.19738 1.21107 1.21117 0.92235 0.93378 0.91557 0.93015 0.92876 0.92532 0.92144 0.93211 0.93226 0.91727 0.91610 0.89657 0.91269 0.91236 0.91662 0.91529 0.93325 0.90016 0.92181 0.91606 0.91695 0.90947 0.93119 0.93056 0.91556 0.96563 0.96426 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 7.85 37.16 0.29 -1.65 16 2 C -0.37 -4.52 0.53 -90.62 -0.05 -4.57 16 3 C -0.13 -1.44 7.85 37.16 0.29 -1.15 16 4 C -0.13 -1.46 7.85 37.16 0.29 -1.17 16 5 Si 1.28 15.25 7.98 -169.99 -1.36 13.90 16 6 C -0.51 -7.03 8.50 101.05 0.86 -6.17 16 7 C -0.51 -5.20 8.50 101.05 0.86 -4.34 16 8 O -0.61 -8.55 4.94 -35.23 -0.17 -8.73 16 9 C 0.07 0.93 4.09 37.16 0.15 1.08 16 10 C 0.07 1.03 3.84 -66.73 -0.26 0.77 16 11 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 12 C -0.13 -1.71 6.36 -24.91 -0.16 -1.87 16 13 C -0.13 -1.80 7.08 -24.59 -0.17 -1.98 16 14 C 0.05 0.95 5.35 -2.30 -0.01 0.94 16 15 N -0.52 -9.66 5.26 -223.35 -1.18 -10.83 16 16 C 0.04 0.78 3.60 -3.82 -0.01 0.77 16 17 C 0.02 0.64 4.80 -27.88 -0.13 0.50 16 18 C -0.51 -14.38 9.11 -34.44 -0.31 -14.69 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 22 Si 0.88 21.81 29.54 -169.99 -5.02 16.79 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H 0.06 0.92 7.79 -51.93 -0.40 0.51 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 29 H 0.05 0.48 7.79 -51.92 -0.40 0.07 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 7.79 -51.93 -0.40 0.19 16 32 H 0.06 0.71 7.97 -51.93 -0.41 0.30 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.48 7.79 -51.93 -0.40 0.08 16 35 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 36 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 37 H 0.08 1.41 7.79 -51.93 -0.40 1.00 16 38 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 39 H 0.07 0.66 7.79 -51.93 -0.40 0.25 16 40 H 0.06 0.64 7.48 -51.93 -0.39 0.25 16 41 H 0.07 0.95 5.29 -51.93 -0.27 0.67 16 42 H 0.05 0.52 7.21 -51.92 -0.37 0.15 16 43 H 0.08 1.09 6.88 -51.93 -0.36 0.73 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 48 H 0.05 0.98 7.44 -51.92 -0.39 0.59 16 49 H 0.05 1.08 6.77 -51.93 -0.35 0.73 16 50 H 0.07 1.35 4.73 -51.93 -0.25 1.11 16 51 H 0.02 0.45 6.86 -51.93 -0.36 0.09 16 52 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 53 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -30.62 400.80 -9.95 -40.56 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -10.53 Total: 0.62 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 1.54 Total: -31.96 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.44 Total: -37.22 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.17 Total: -8.73 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: -6.38 Total: 30.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.62 -9.95 -40.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844347157.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.736 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds