Wall clock time and date at job start Tue Mar 31 2020 10:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46637 * 2 1 4 4 C 1.52996 * 109.47116 * 240.00305 * 2 1 3 5 5 Si 1.86301 * 109.47439 * 119.99762 * 2 1 3 6 6 C 1.86299 * 109.47231 * 300.00445 * 5 2 1 7 7 C 1.86302 * 109.47015 * 179.97438 * 5 2 1 8 8 O 1.63097 * 109.46701 * 60.00447 * 5 2 1 9 9 C 1.42898 * 113.99992 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47406 * 180.02562 * 9 8 5 11 11 H 1.09003 * 109.87934 * 171.88578 * 10 9 8 12 12 C 1.54313 * 110.02773 * 50.76525 * 10 9 8 13 13 C 1.55136 * 103.02247 * 218.23865 * 12 10 9 14 14 C 1.54909 * 101.65516 * 35.64990 * 13 12 10 15 15 N 1.47445 * 109.88583 * 292.91476 * 10 9 8 16 16 C 1.46900 * 111.00067 * 356.31046 * 15 10 9 17 17 C 1.52999 * 109.47239 * 177.04532 * 16 15 10 18 18 C 1.50705 * 109.47083 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00212 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99878 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00009 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00033 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47090 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47223 * 119.99701 * 22 20 18 25 25 H 1.48496 * 109.47163 * 239.99819 * 22 20 18 26 26 H 1.08996 * 109.46900 * 299.99561 * 1 2 3 27 27 H 1.08993 * 109.47356 * 60.00205 * 1 2 3 28 28 H 1.09001 * 109.46760 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46693 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47124 * 300.00075 * 3 2 1 31 31 H 1.08996 * 109.47117 * 60.00572 * 3 2 1 32 32 H 1.09001 * 109.47003 * 299.99480 * 4 2 1 33 33 H 1.09003 * 109.47312 * 59.99516 * 4 2 1 34 34 H 1.09003 * 109.47479 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.47133 * 179.97438 * 6 5 2 36 36 H 1.09001 * 109.47026 * 299.99864 * 6 5 2 37 37 H 1.09000 * 109.46851 * 59.99659 * 6 5 2 38 38 H 1.08996 * 109.47187 * 300.00593 * 7 5 2 39 39 H 1.09001 * 109.46897 * 60.00348 * 7 5 2 40 40 H 1.09003 * 109.47001 * 180.02562 * 7 5 2 41 41 H 1.08998 * 109.47689 * 59.99478 * 9 8 5 42 42 H 1.09008 * 109.46947 * 299.99536 * 9 8 5 43 43 H 1.08999 * 110.70253 * 336.61974 * 12 10 9 44 44 H 1.09000 * 110.70967 * 99.85113 * 12 10 9 45 45 H 1.08995 * 110.99136 * 277.55977 * 13 12 10 46 46 H 1.09005 * 111.02756 * 153.75572 * 13 12 10 47 47 H 1.08997 * 110.37830 * 204.09967 * 14 13 12 48 48 H 1.09007 * 110.46422 * 81.80660 * 14 13 12 49 49 H 1.08998 * 109.47268 * 297.04591 * 16 15 10 50 50 H 1.09001 * 109.46845 * 57.04596 * 16 15 10 51 51 H 1.09004 * 109.47169 * 299.99766 * 17 16 15 52 52 H 1.08995 * 109.47560 * 59.99690 * 17 16 15 53 53 H 0.96998 * 120.00384 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8781 1.5211 6 6 1.5301 0.0000 3.0423 7 6 4.0141 -0.8788 1.5206 8 8 1.6075 -2.4159 1.5211 9 6 2.0287 -3.1813 2.6519 10 6 1.4641 -4.5994 2.5469 11 1 1.8952 -5.2286 3.3256 12 6 1.7801 -5.1926 1.1578 13 6 0.4922 -5.9870 0.8158 14 6 -0.6048 -5.0876 1.4381 15 7 -0.0036 -4.5662 2.6841 16 6 -0.4753 -3.2040 2.9664 17 6 -2.0040 -3.1963 3.0288 18 6 -2.4879 -1.7986 3.3178 19 1 -1.7764 -0.9962 3.4447 20 6 -3.8392 -1.5445 3.4212 21 7 -4.7057 -2.5217 3.2672 22 14 -4.4390 0.1877 3.7801 23 1 -3.2731 1.0983 3.9099 24 1 -5.3081 0.6508 2.6686 25 1 -5.2126 0.1910 5.0477 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.8931 -0.5141 3.9323 36 1 1.8933 1.0277 3.0423 37 1 0.4401 -0.0001 3.0422 38 1 4.3770 -1.3928 0.6306 39 1 4.3778 0.1488 1.5204 40 1 4.3775 -1.3930 2.4104 41 1 1.6640 -2.7112 3.5652 42 1 3.1177 -3.2251 2.6757 43 1 1.9485 -4.3994 0.4294 44 1 2.6413 -5.8586 1.2100 45 1 0.5037 -6.9704 1.2855 46 1 0.3608 -6.0733 -0.2629 47 1 -1.4949 -5.6752 1.6631 48 1 -0.8529 -4.2674 0.7643 49 1 -0.0710 -2.8702 3.9220 50 1 -0.1406 -2.5325 2.1758 51 1 -2.4084 -3.5300 2.0732 52 1 -2.3388 -3.8678 3.8194 53 1 -5.6564 -2.3430 3.3396 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844347157.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:44 Heat of formation + Delta-G solvation = -109.227856 kcal Electronic energy + Delta-G solvation = -26794.338820 eV Core-core repulsion = 23514.869299 eV Total energy + Delta-G solvation = -3279.469522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.218 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63974 -37.08719 -36.77676 -35.54075 -33.43997 -31.14102 -29.93749 -29.29846 -29.01769 -27.79280 -27.33721 -26.18382 -25.66023 -23.31710 -21.55620 -20.49547 -20.08319 -18.53614 -17.91931 -16.75303 -16.62419 -16.28828 -15.84826 -15.67584 -15.46356 -14.83809 -14.81287 -14.61568 -14.32936 -13.90699 -13.80278 -13.69658 -13.59424 -13.33198 -13.27088 -13.13096 -12.94174 -12.91873 -12.87376 -12.81612 -12.46827 -12.37309 -12.34586 -12.12620 -11.87996 -11.74614 -11.65622 -11.61389 -11.46379 -11.31380 -11.23842 -11.11994 -10.96602 -10.54317 -10.20643 -9.98784 -8.83078 -8.18346 -6.27593 1.35257 1.35428 1.48310 1.61133 1.85345 2.22248 2.38788 2.59566 3.15052 3.32460 3.89160 3.97728 4.16080 4.17129 4.17970 4.40281 4.49632 4.50819 4.52698 4.69682 4.71714 4.76931 4.79728 4.83957 4.85121 4.86539 4.87625 4.88915 4.94654 5.03308 5.11345 5.12142 5.12573 5.14584 5.17076 5.24408 5.27983 5.30504 5.36734 5.46155 5.48117 5.52704 5.55719 5.62956 5.70020 5.74889 5.80478 5.87156 6.17864 6.42543 6.50934 6.90641 7.40498 8.94463 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.006321 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.681848 B = 4428.323059 C = 6170.472062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.376 4.376 3 C -0.136 4.136 4 C -0.129 4.129 5 Si 1.291 2.709 6 C -0.524 4.524 7 C -0.492 4.492 8 O -0.629 6.629 9 C 0.063 3.937 10 C 0.062 3.938 11 H 0.102 0.898 12 C -0.123 4.123 13 C -0.120 4.120 14 C 0.051 3.949 15 N -0.539 5.539 16 C 0.058 3.942 17 C 0.034 3.966 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.002 3.998 21 N -0.933 5.933 22 Si 0.953 3.047 23 H -0.261 1.261 24 H -0.278 1.278 25 H -0.278 1.278 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.046 0.954 48 H 0.025 0.975 49 H 0.048 0.952 50 H 0.074 0.926 51 H -0.011 1.011 52 H -0.020 1.020 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.287 1.676 -7.095 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.419 4.419 3 C -0.193 4.193 4 C -0.186 4.186 5 Si 1.422 2.578 6 C -0.624 4.624 7 C -0.596 4.596 8 O -0.589 6.589 9 C -0.012 4.012 10 C -0.046 4.046 11 H 0.120 0.880 12 C -0.161 4.161 13 C -0.158 4.158 14 C -0.077 4.077 15 N -0.264 5.264 16 C -0.069 4.069 17 C -0.004 4.004 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.195 4.195 21 N -0.574 5.574 22 Si 0.777 3.223 23 H -0.185 1.185 24 H -0.203 1.203 25 H -0.203 1.203 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.067 0.933 50 H 0.091 0.909 51 H 0.007 0.993 52 H -0.002 1.002 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 20.773 1.162 -6.791 21.886 hybrid contribution -1.245 1.734 0.007 2.134 sum 19.529 2.896 -6.784 20.875 Atomic orbital electron populations 1.21472 0.95643 1.00910 1.00998 1.25816 0.98852 1.03620 1.13582 1.21575 1.01697 0.94175 1.01884 1.21479 1.01385 0.99589 0.96160 0.76683 0.64206 0.53418 0.63521 1.27282 1.05862 1.09907 1.19338 1.26742 1.22262 1.05425 1.05171 1.85500 1.78777 1.46666 1.47920 1.22604 0.99274 0.92318 0.87034 1.22828 0.87762 0.95048 0.98986 0.88024 1.22710 0.97758 0.99563 0.96028 1.22656 0.94131 0.98375 1.00641 1.22826 0.97747 0.96997 0.90172 1.63710 1.05963 1.22818 1.33881 1.22517 0.95227 0.89185 0.99985 1.18981 0.92152 0.94941 0.94295 1.21601 0.92064 0.95417 1.47562 0.92290 1.25879 0.97288 1.00973 0.95355 1.70121 1.02023 1.33658 1.51583 0.85581 0.78609 0.80110 0.77953 1.18527 1.20335 1.20327 0.93975 0.92992 0.94142 0.90546 0.92772 0.92897 0.93168 0.93170 0.90822 0.91615 0.90339 0.93452 0.89996 0.89872 0.90665 0.92990 0.89271 0.90117 0.88827 0.90458 0.90191 0.93510 0.95638 0.93319 0.90887 0.99286 1.00201 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 7.85 71.98 0.56 -3.49 16 2 C -0.38 -8.72 0.53 -10.79 -0.01 -8.73 16 3 C -0.14 -2.65 7.85 71.98 0.56 -2.09 16 4 C -0.13 -2.64 7.85 71.98 0.56 -2.08 16 5 Si 1.29 28.73 7.98 68.60 0.55 29.28 16 6 C -0.52 -14.46 8.50 113.37 0.96 -13.49 16 7 C -0.49 -7.79 8.50 113.37 0.96 -6.83 16 8 O -0.63 -17.01 4.94 -148.98 -0.74 -17.74 16 9 C 0.06 1.58 4.09 71.98 0.29 1.88 16 10 C 0.06 1.70 3.84 45.26 0.17 1.87 16 11 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 12 C -0.12 -2.81 6.36 31.77 0.20 -2.61 16 13 C -0.12 -3.16 7.08 31.98 0.23 -2.93 16 14 C 0.05 1.89 5.35 86.77 0.46 2.35 16 15 N -0.54 -20.44 5.26 -860.53 -4.53 -24.97 16 16 C 0.06 2.56 3.60 86.30 0.31 2.87 16 17 C 0.03 1.90 4.80 29.85 0.14 2.04 16 18 C -0.53 -31.15 9.11 25.60 0.23 -30.92 16 19 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 20 C 0.00 0.15 5.46 84.66 0.46 0.61 16 21 N -0.93 -59.03 13.29 21.45 0.28 -58.74 16 22 Si 0.95 45.89 29.54 68.60 2.03 47.92 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H 0.04 1.38 7.79 -2.39 -0.02 1.36 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.40 7.96 -2.39 -0.02 1.38 16 29 H 0.08 1.12 7.79 -2.38 -0.02 1.10 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.05 7.79 -2.39 -0.02 1.03 16 32 H 0.05 1.12 7.97 -2.39 -0.02 1.10 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.16 7.79 -2.39 -0.02 1.14 16 35 H 0.06 1.72 7.48 -2.39 -0.02 1.71 16 36 H 0.08 1.86 7.79 -2.39 -0.02 1.84 16 37 H 0.05 1.64 7.79 -2.39 -0.02 1.62 16 38 H 0.08 1.16 7.79 -2.39 -0.02 1.14 16 39 H 0.08 1.14 7.79 -2.39 -0.02 1.13 16 40 H 0.07 1.09 7.48 -2.39 -0.02 1.07 16 41 H 0.05 1.44 5.29 -2.39 -0.01 1.43 16 42 H 0.09 1.53 7.21 -2.38 -0.02 1.51 16 43 H 0.08 1.91 6.88 -2.39 -0.02 1.89 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.03 1.05 7.44 -2.38 -0.02 1.03 16 49 H 0.05 2.14 6.77 -2.39 -0.02 2.13 16 50 H 0.07 3.14 4.73 -2.39 -0.01 3.13 16 51 H -0.01 -0.68 6.86 -2.39 -0.02 -0.70 16 52 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 53 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -70.38 400.80 4.54 -65.84 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.82 Total: 19.96 kcal Atomic # 6 Polarization: -67.67 SS G_CDS: 6.13 Total: -61.54 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -4.24 Total: -83.72 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.74 Total: -17.74 kcal Atomic # 14 Polarization: 74.62 SS G_CDS: 2.57 Total: 77.20 kcal Total: -70.38 4.54 -65.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844347157.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.386 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds