Wall clock time and date at job start Tue Mar 31 2020 10:58:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53008 * 109.46637 * 2 1
4 4 C 1.52996 * 109.47116 * 240.00305 * 2 1 3
5 5 Si 1.86301 * 109.47439 * 119.99762 * 2 1 3
6 6 C 1.86299 * 109.47231 * 300.00445 * 5 2 1
7 7 C 1.86302 * 109.47015 * 179.97438 * 5 2 1
8 8 O 1.63097 * 109.46701 * 60.00447 * 5 2 1
9 9 C 1.42898 * 113.99992 * 180.02562 * 8 5 2
10 10 C 1.52999 * 109.47406 * 180.02562 * 9 8 5
11 11 H 1.09003 * 109.87934 * 171.88578 * 10 9 8
12 12 C 1.54313 * 110.02773 * 50.76525 * 10 9 8
13 13 C 1.55136 * 103.02247 * 218.23865 * 12 10 9
14 14 C 1.54909 * 101.65516 * 35.64990 * 13 12 10
15 15 N 1.47445 * 109.88583 * 292.91476 * 10 9 8
16 16 C 1.46900 * 111.00067 * 356.31046 * 15 10 9
17 17 C 1.52999 * 109.47239 * 177.04532 * 16 15 10
18 18 C 1.50705 * 109.47083 * 180.02562 * 17 16 15
19 19 H 1.07993 * 120.00212 * 359.97438 * 18 17 16
20 20 C 1.37882 * 119.99878 * 180.02562 * 18 17 16
21 21 N 1.31515 * 120.00009 * 359.97438 * 20 18 17
22 22 Si 1.86792 * 120.00033 * 179.97438 * 20 18 17
23 23 H 1.48505 * 109.47090 * 359.97438 * 22 20 18
24 24 H 1.48500 * 109.47223 * 119.99701 * 22 20 18
25 25 H 1.48496 * 109.47163 * 239.99819 * 22 20 18
26 26 H 1.08996 * 109.46900 * 299.99561 * 1 2 3
27 27 H 1.08993 * 109.47356 * 60.00205 * 1 2 3
28 28 H 1.09001 * 109.46760 * 180.02562 * 1 2 3
29 29 H 1.09007 * 109.46693 * 180.02562 * 3 2 1
30 30 H 1.09003 * 109.47124 * 300.00075 * 3 2 1
31 31 H 1.08996 * 109.47117 * 60.00572 * 3 2 1
32 32 H 1.09001 * 109.47003 * 299.99480 * 4 2 1
33 33 H 1.09003 * 109.47312 * 59.99516 * 4 2 1
34 34 H 1.09003 * 109.47479 * 179.97438 * 4 2 1
35 35 H 1.09003 * 109.47133 * 179.97438 * 6 5 2
36 36 H 1.09001 * 109.47026 * 299.99864 * 6 5 2
37 37 H 1.09000 * 109.46851 * 59.99659 * 6 5 2
38 38 H 1.08996 * 109.47187 * 300.00593 * 7 5 2
39 39 H 1.09001 * 109.46897 * 60.00348 * 7 5 2
40 40 H 1.09003 * 109.47001 * 180.02562 * 7 5 2
41 41 H 1.08998 * 109.47689 * 59.99478 * 9 8 5
42 42 H 1.09008 * 109.46947 * 299.99536 * 9 8 5
43 43 H 1.08999 * 110.70253 * 336.61974 * 12 10 9
44 44 H 1.09000 * 110.70967 * 99.85113 * 12 10 9
45 45 H 1.08995 * 110.99136 * 277.55977 * 13 12 10
46 46 H 1.09005 * 111.02756 * 153.75572 * 13 12 10
47 47 H 1.08997 * 110.37830 * 204.09967 * 14 13 12
48 48 H 1.09007 * 110.46422 * 81.80660 * 14 13 12
49 49 H 1.08998 * 109.47268 * 297.04591 * 16 15 10
50 50 H 1.09001 * 109.46845 * 57.04596 * 16 15 10
51 51 H 1.09004 * 109.47169 * 299.99766 * 17 16 15
52 52 H 1.08995 * 109.47560 * 59.99690 * 17 16 15
53 53 H 0.96998 * 120.00384 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7212 -1.2492
5 14 2.1511 -0.8781 1.5211
6 6 1.5301 0.0000 3.0423
7 6 4.0141 -0.8788 1.5206
8 8 1.6075 -2.4159 1.5211
9 6 2.0287 -3.1813 2.6519
10 6 1.4641 -4.5994 2.5469
11 1 1.8952 -5.2286 3.3256
12 6 1.7801 -5.1926 1.1578
13 6 0.4922 -5.9870 0.8158
14 6 -0.6048 -5.0876 1.4381
15 7 -0.0036 -4.5662 2.6841
16 6 -0.4753 -3.2040 2.9664
17 6 -2.0040 -3.1963 3.0288
18 6 -2.4879 -1.7986 3.3178
19 1 -1.7764 -0.9962 3.4447
20 6 -3.8392 -1.5445 3.4212
21 7 -4.7057 -2.5217 3.2672
22 14 -4.4390 0.1877 3.7801
23 1 -3.2731 1.0983 3.9099
24 1 -5.3081 0.6508 2.6686
25 1 -5.2126 0.1910 5.0477
26 1 -0.3633 0.5138 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 3.1300 1.4426 -0.0005
30 1 1.6765 1.9564 -0.8900
31 1 1.6766 1.9564 0.8900
32 1 1.6767 -1.7489 -1.2492
33 1 1.6766 -0.2073 -2.1392
34 1 3.1300 -0.7208 -1.2495
35 1 1.8931 -0.5141 3.9323
36 1 1.8933 1.0277 3.0423
37 1 0.4401 -0.0001 3.0422
38 1 4.3770 -1.3928 0.6306
39 1 4.3778 0.1488 1.5204
40 1 4.3775 -1.3930 2.4104
41 1 1.6640 -2.7112 3.5652
42 1 3.1177 -3.2251 2.6757
43 1 1.9485 -4.3994 0.4294
44 1 2.6413 -5.8586 1.2100
45 1 0.5037 -6.9704 1.2855
46 1 0.3608 -6.0733 -0.2629
47 1 -1.4949 -5.6752 1.6631
48 1 -0.8529 -4.2674 0.7643
49 1 -0.0710 -2.8702 3.9220
50 1 -0.1406 -2.5325 2.1758
51 1 -2.4084 -3.5300 2.0732
52 1 -2.3388 -3.8678 3.8194
53 1 -5.6564 -2.3430 3.3396
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000844347157.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:58:44
Heat of formation + Delta-G solvation = -109.227856 kcal
Electronic energy + Delta-G solvation = -26794.338820 eV
Core-core repulsion = 23514.869299 eV
Total energy + Delta-G solvation = -3279.469522 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 313.218 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.63974 -37.08719 -36.77676 -35.54075 -33.43997 -31.14102 -29.93749 -29.29846
-29.01769 -27.79280 -27.33721 -26.18382 -25.66023 -23.31710 -21.55620 -20.49547
-20.08319 -18.53614 -17.91931 -16.75303 -16.62419 -16.28828 -15.84826 -15.67584
-15.46356 -14.83809 -14.81287 -14.61568 -14.32936 -13.90699 -13.80278 -13.69658
-13.59424 -13.33198 -13.27088 -13.13096 -12.94174 -12.91873 -12.87376 -12.81612
-12.46827 -12.37309 -12.34586 -12.12620 -11.87996 -11.74614 -11.65622 -11.61389
-11.46379 -11.31380 -11.23842 -11.11994 -10.96602 -10.54317 -10.20643 -9.98784
-8.83078 -8.18346 -6.27593 1.35257 1.35428 1.48310 1.61133 1.85345
2.22248 2.38788 2.59566 3.15052 3.32460 3.89160 3.97728 4.16080
4.17129 4.17970 4.40281 4.49632 4.50819 4.52698 4.69682 4.71714
4.76931 4.79728 4.83957 4.85121 4.86539 4.87625 4.88915 4.94654
5.03308 5.11345 5.12142 5.12573 5.14584 5.17076 5.24408 5.27983
5.30504 5.36734 5.46155 5.48117 5.52704 5.55719 5.62956 5.70020
5.74889 5.80478 5.87156 6.17864 6.42543 6.50934 6.90641 7.40498
8.94463
Molecular weight = 313.22amu
Principal moments of inertia in cm(-1)
A = 0.009974 B = 0.006321 C = 0.004537
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2806.681848 B = 4428.323059 C = 6170.472062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.376 4.376
3 C -0.136 4.136
4 C -0.129 4.129
5 Si 1.291 2.709
6 C -0.524 4.524
7 C -0.492 4.492
8 O -0.629 6.629
9 C 0.063 3.937
10 C 0.062 3.938
11 H 0.102 0.898
12 C -0.123 4.123
13 C -0.120 4.120
14 C 0.051 3.949
15 N -0.539 5.539
16 C 0.058 3.942
17 C 0.034 3.966
18 C -0.528 4.528
19 H 0.059 0.941
20 C 0.002 3.998
21 N -0.933 5.933
22 Si 0.953 3.047
23 H -0.261 1.261
24 H -0.278 1.278
25 H -0.278 1.278
26 H 0.041 0.959
27 H 0.051 0.949
28 H 0.039 0.961
29 H 0.076 0.924
30 H 0.053 0.947
31 H 0.052 0.948
32 H 0.049 0.951
33 H 0.049 0.951
34 H 0.073 0.927
35 H 0.065 0.935
36 H 0.077 0.923
37 H 0.046 0.954
38 H 0.081 0.919
39 H 0.082 0.918
40 H 0.074 0.926
41 H 0.052 0.948
42 H 0.089 0.911
43 H 0.080 0.920
44 H 0.093 0.907
45 H 0.077 0.923
46 H 0.079 0.921
47 H 0.046 0.954
48 H 0.025 0.975
49 H 0.048 0.952
50 H 0.074 0.926
51 H -0.011 1.011
52 H -0.020 1.020
53 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.287 1.676 -7.095 22.501
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.419 4.419
3 C -0.193 4.193
4 C -0.186 4.186
5 Si 1.422 2.578
6 C -0.624 4.624
7 C -0.596 4.596
8 O -0.589 6.589
9 C -0.012 4.012
10 C -0.046 4.046
11 H 0.120 0.880
12 C -0.161 4.161
13 C -0.158 4.158
14 C -0.077 4.077
15 N -0.264 5.264
16 C -0.069 4.069
17 C -0.004 4.004
18 C -0.566 4.566
19 H 0.077 0.923
20 C -0.195 4.195
21 N -0.574 5.574
22 Si 0.777 3.223
23 H -0.185 1.185
24 H -0.203 1.203
25 H -0.203 1.203
26 H 0.060 0.940
27 H 0.070 0.930
28 H 0.059 0.941
29 H 0.095 0.905
30 H 0.072 0.928
31 H 0.071 0.929
32 H 0.068 0.932
33 H 0.068 0.932
34 H 0.092 0.908
35 H 0.084 0.916
36 H 0.097 0.903
37 H 0.065 0.935
38 H 0.100 0.900
39 H 0.101 0.899
40 H 0.093 0.907
41 H 0.070 0.930
42 H 0.107 0.893
43 H 0.099 0.901
44 H 0.112 0.888
45 H 0.095 0.905
46 H 0.098 0.902
47 H 0.065 0.935
48 H 0.044 0.956
49 H 0.067 0.933
50 H 0.091 0.909
51 H 0.007 0.993
52 H -0.002 1.002
53 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 20.773 1.162 -6.791 21.886
hybrid contribution -1.245 1.734 0.007 2.134
sum 19.529 2.896 -6.784 20.875
Atomic orbital electron populations
1.21472 0.95643 1.00910 1.00998 1.25816 0.98852 1.03620 1.13582
1.21575 1.01697 0.94175 1.01884 1.21479 1.01385 0.99589 0.96160
0.76683 0.64206 0.53418 0.63521 1.27282 1.05862 1.09907 1.19338
1.26742 1.22262 1.05425 1.05171 1.85500 1.78777 1.46666 1.47920
1.22604 0.99274 0.92318 0.87034 1.22828 0.87762 0.95048 0.98986
0.88024 1.22710 0.97758 0.99563 0.96028 1.22656 0.94131 0.98375
1.00641 1.22826 0.97747 0.96997 0.90172 1.63710 1.05963 1.22818
1.33881 1.22517 0.95227 0.89185 0.99985 1.18981 0.92152 0.94941
0.94295 1.21601 0.92064 0.95417 1.47562 0.92290 1.25879 0.97288
1.00973 0.95355 1.70121 1.02023 1.33658 1.51583 0.85581 0.78609
0.80110 0.77953 1.18527 1.20335 1.20327 0.93975 0.92992 0.94142
0.90546 0.92772 0.92897 0.93168 0.93170 0.90822 0.91615 0.90339
0.93452 0.89996 0.89872 0.90665 0.92990 0.89271 0.90117 0.88827
0.90458 0.90191 0.93510 0.95638 0.93319 0.90887 0.99286 1.00201
0.92969
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.05 7.85 71.98 0.56 -3.49 16
2 C -0.38 -8.72 0.53 -10.79 -0.01 -8.73 16
3 C -0.14 -2.65 7.85 71.98 0.56 -2.09 16
4 C -0.13 -2.64 7.85 71.98 0.56 -2.08 16
5 Si 1.29 28.73 7.98 68.60 0.55 29.28 16
6 C -0.52 -14.46 8.50 113.37 0.96 -13.49 16
7 C -0.49 -7.79 8.50 113.37 0.96 -6.83 16
8 O -0.63 -17.01 4.94 -148.98 -0.74 -17.74 16
9 C 0.06 1.58 4.09 71.98 0.29 1.88 16
10 C 0.06 1.70 3.84 45.26 0.17 1.87 16
11 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16
12 C -0.12 -2.81 6.36 31.77 0.20 -2.61 16
13 C -0.12 -3.16 7.08 31.98 0.23 -2.93 16
14 C 0.05 1.89 5.35 86.77 0.46 2.35 16
15 N -0.54 -20.44 5.26 -860.53 -4.53 -24.97 16
16 C 0.06 2.56 3.60 86.30 0.31 2.87 16
17 C 0.03 1.90 4.80 29.85 0.14 2.04 16
18 C -0.53 -31.15 9.11 25.60 0.23 -30.92 16
19 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16
20 C 0.00 0.15 5.46 84.66 0.46 0.61 16
21 N -0.93 -59.03 13.29 21.45 0.28 -58.74 16
22 Si 0.95 45.89 29.54 68.60 2.03 47.92 16
23 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16
24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
26 H 0.04 1.38 7.79 -2.39 -0.02 1.36 16
27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
28 H 0.04 1.40 7.96 -2.39 -0.02 1.38 16
29 H 0.08 1.12 7.79 -2.38 -0.02 1.10 16
30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
31 H 0.05 1.05 7.79 -2.39 -0.02 1.03 16
32 H 0.05 1.12 7.97 -2.39 -0.02 1.10 16
33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
34 H 0.07 1.16 7.79 -2.39 -0.02 1.14 16
35 H 0.06 1.72 7.48 -2.39 -0.02 1.71 16
36 H 0.08 1.86 7.79 -2.39 -0.02 1.84 16
37 H 0.05 1.64 7.79 -2.39 -0.02 1.62 16
38 H 0.08 1.16 7.79 -2.39 -0.02 1.14 16
39 H 0.08 1.14 7.79 -2.39 -0.02 1.13 16
40 H 0.07 1.09 7.48 -2.39 -0.02 1.07 16
41 H 0.05 1.44 5.29 -2.39 -0.01 1.43 16
42 H 0.09 1.53 7.21 -2.38 -0.02 1.51 16
43 H 0.08 1.91 6.88 -2.39 -0.02 1.89 16
44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
46 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16
47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
48 H 0.03 1.05 7.44 -2.38 -0.02 1.03 16
49 H 0.05 2.14 6.77 -2.39 -0.02 2.13 16
50 H 0.07 3.14 4.73 -2.39 -0.01 3.13 16
51 H -0.01 -0.68 6.86 -2.39 -0.02 -0.70 16
52 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16
53 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16
Total: -1.00 -70.38 400.80 4.54 -65.84
By element:
Atomic # 1 Polarization: 19.14 SS G_CDS: 0.82 Total: 19.96 kcal
Atomic # 6 Polarization: -67.67 SS G_CDS: 6.13 Total: -61.54 kcal
Atomic # 7 Polarization: -79.47 SS G_CDS: -4.24 Total: -83.72 kcal
Atomic # 8 Polarization: -17.01 SS G_CDS: -0.74 Total: -17.74 kcal
Atomic # 14 Polarization: 74.62 SS G_CDS: 2.57 Total: 77.20 kcal
Total: -70.38 4.54 -65.84 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000844347157.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.386 kcal
(2) G-P(sol) polarization free energy of solvation -70.384 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.770 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.228 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds