Wall clock time and date at job start Tue Mar 31 2020 10:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99852 * 2 1 4 4 C 1.53000 * 109.47551 * 59.99732 * 3 2 1 5 5 C 1.52999 * 109.46980 * 299.99611 * 3 2 1 6 6 C 1.52998 * 109.46984 * 179.97438 * 3 2 1 7 7 C 1.52999 * 109.47191 * 64.99493 * 6 3 2 8 8 N 1.46501 * 109.47074 * 179.97438 * 7 6 3 9 9 C 1.34783 * 119.99874 * 180.02562 * 8 7 6 10 10 O 1.21585 * 119.99991 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99707 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99730 * 179.97438 * 11 9 8 13 13 C 1.53081 * 109.43848 * 84.79387 * 12 11 9 14 14 C 1.53190 * 109.29209 * 181.23616 * 13 12 11 15 15 N 1.46921 * 108.89311 * 305.57883 * 14 13 12 16 16 C 1.36940 * 120.63187 * 233.51481 * 15 14 13 17 17 H 1.08001 * 120.00319 * 152.61971 * 16 15 14 18 18 C 1.38813 * 119.99903 * 332.62203 * 16 15 14 19 19 N 1.31624 * 120.00070 * 159.34992 * 18 16 15 20 20 Si 1.86800 * 120.00077 * 339.35529 * 18 16 15 21 21 H 1.48494 * 109.47321 * 92.87851 * 20 18 16 22 22 H 1.48501 * 109.47194 * 212.88430 * 20 18 16 23 23 H 1.48509 * 109.46983 * 332.87654 * 20 18 16 24 24 C 1.46923 * 118.74178 * 53.54201 * 15 14 13 25 25 C 1.53035 * 109.45960 * 204.99782 * 12 11 9 26 26 H 1.08997 * 109.47130 * 60.00217 * 1 2 3 27 27 H 1.08994 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46876 * 300.00368 * 1 2 3 29 29 H 1.08998 * 109.47145 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47079 * 299.99793 * 4 3 2 31 31 H 1.08999 * 109.46962 * 59.99841 * 4 3 2 32 32 H 1.09005 * 109.47051 * 300.00388 * 5 3 2 33 33 H 1.08995 * 109.47390 * 60.00318 * 5 3 2 34 34 H 1.08998 * 109.47112 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.47581 * 304.99595 * 6 3 2 36 36 H 1.09003 * 109.47079 * 184.99590 * 6 3 2 37 37 H 1.09004 * 109.47014 * 60.00226 * 7 6 3 38 38 H 1.08996 * 109.47375 * 300.00367 * 7 6 3 39 39 H 0.97001 * 120.00469 * 0.02562 * 8 7 6 40 40 H 0.96998 * 120.00063 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.46073 * 324.97324 * 12 11 9 42 42 H 1.08992 * 109.38800 * 61.36034 * 13 12 11 43 43 H 1.09002 * 109.61927 * 301.25313 * 13 12 11 44 44 H 1.08999 * 109.58729 * 185.71870 * 14 13 12 45 45 H 1.09004 * 109.58886 * 65.43758 * 14 13 12 46 46 H 0.97001 * 119.99914 * 180.02562 * 19 18 16 47 47 H 1.09004 * 109.59094 * 66.17180 * 24 15 14 48 48 H 1.09001 * 109.59077 * 186.46452 * 24 15 14 49 49 H 1.09002 * 109.49848 * 58.67960 * 25 12 11 50 50 H 1.09002 * 109.52425 * 298.59433 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5588 2.0646 -1.2493 6 6 3.5354 1.1846 0.0006 7 6 3.9962 0.5363 -1.3063 8 7 5.4567 0.4212 -1.3059 9 6 6.0900 -0.1235 -2.3637 10 8 5.4492 -0.5197 -3.3180 11 7 7.4336 -0.2298 -2.3631 12 6 8.1220 -0.8224 -3.5126 13 6 8.3492 0.2516 -4.5795 14 6 9.0413 -0.3782 -5.7923 15 7 10.2656 -1.0550 -5.3431 16 6 11.4728 -0.7715 -5.9241 17 1 12.3857 -0.8946 -5.3602 18 6 11.5232 -0.3257 -7.2377 19 7 12.5828 0.3229 -7.6724 20 14 10.0873 -0.6464 -8.3886 21 1 9.1592 0.5124 -8.3570 22 1 10.5941 -0.8371 -9.7714 23 1 9.3669 -1.8696 -7.9525 24 6 10.1700 -2.0422 -4.2592 25 6 9.4684 -1.3933 -3.0618 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.0025 3.0604 1.2493 30 1 0.4721 2.1509 1.2491 31 1 1.8803 1.5239 2.1392 32 1 1.8805 1.5236 -2.1393 33 1 0.4723 2.1507 -1.2494 34 1 2.0025 3.0602 -1.2495 35 1 3.8508 0.5686 0.8427 36 1 3.9784 2.1766 0.0901 37 1 3.6809 1.1524 -2.1485 38 1 3.5532 -0.4555 -1.3959 39 1 5.9680 0.7370 -0.5445 40 1 7.9448 0.0859 -1.6016 41 1 7.5099 -1.6220 -3.9298 42 1 8.9797 1.0407 -4.1700 43 1 7.3912 0.6723 -4.8851 44 1 9.2968 0.3995 -6.5120 45 1 8.3736 -1.1026 -6.2588 46 1 12.6179 0.6347 -8.5903 47 1 9.5932 -2.9026 -4.5983 48 1 11.1701 -2.3641 -3.9688 49 1 9.3050 -2.1418 -2.2864 50 1 10.0907 -0.5902 -2.6669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868226222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:58 Heat of formation + Delta-G solvation = -85.617780 kcal Electronic energy + Delta-G solvation = -26797.614999 eV Core-core repulsion = 23052.422496 eV Total energy + Delta-G solvation = -3745.192503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24452 -40.14789 -39.27624 -36.53194 -35.90450 -34.33370 -33.84448 -31.96516 -31.80038 -29.88974 -28.43701 -27.65602 -26.69965 -24.46911 -24.29271 -23.33380 -21.87830 -21.26069 -20.78454 -19.32165 -18.74144 -17.75683 -17.33517 -17.10218 -16.55787 -16.38959 -16.10296 -15.95037 -15.53125 -15.41284 -15.30982 -15.24658 -14.69416 -14.51723 -14.37476 -14.09148 -13.84468 -13.79343 -13.42014 -13.28409 -12.92774 -12.71906 -12.69107 -12.56176 -12.50726 -12.36924 -12.21355 -12.04427 -11.96507 -11.75024 -11.52129 -11.48092 -11.41479 -11.18882 -10.75150 -10.47914 -10.29730 -9.71919 -8.96557 -8.17250 -5.48071 1.28935 1.39374 1.48118 1.71226 2.18824 2.40479 2.86148 3.04313 3.25386 3.38278 3.73352 3.82400 3.87282 3.97118 4.03622 4.22530 4.26125 4.32291 4.35627 4.46904 4.47627 4.52895 4.63132 4.68696 4.69413 4.70602 4.71627 4.84898 4.88644 4.89763 4.96074 5.00394 5.03226 5.05228 5.09660 5.15992 5.17607 5.24565 5.37496 5.43612 5.53520 5.59081 5.87140 6.06928 6.13323 6.33565 6.90569 7.16769 7.61500 7.63684 8.03294 9.02271 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.028733 B = 0.002333 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.245489 B =11999.644519 C =12355.357353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.403 6.403 3 C 0.109 3.891 4 C -0.173 4.173 5 C -0.185 4.185 6 C -0.107 4.107 7 C 0.143 3.857 8 N -0.732 5.732 9 C 0.697 3.303 10 O -0.640 6.640 11 N -0.725 5.725 12 C 0.178 3.822 13 C -0.129 4.129 14 C 0.126 3.874 15 N -0.619 5.619 16 C -0.242 4.242 17 H 0.063 0.937 18 C -0.032 4.032 19 N -0.953 5.953 20 Si 0.937 3.063 21 H -0.282 1.282 22 H -0.309 1.309 23 H -0.266 1.266 24 C 0.143 3.857 25 C -0.123 4.123 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.413 0.587 40 H 0.412 0.588 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.024 0.976 46 H 0.261 0.739 47 H 0.032 0.968 48 H 0.071 0.929 49 H 0.096 0.904 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.617 3.880 23.442 33.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.323 6.323 3 C 0.070 3.930 4 C -0.230 4.230 5 C -0.242 4.242 6 C -0.145 4.145 7 C 0.019 3.981 8 N -0.389 5.389 9 C 0.396 3.604 10 O -0.521 6.521 11 N -0.380 5.380 12 C 0.073 3.927 13 C -0.170 4.170 14 C 0.000 4.000 15 N -0.344 5.344 16 C -0.372 4.372 17 H 0.080 0.920 18 C -0.227 4.227 19 N -0.600 5.600 20 Si 0.767 3.233 21 H -0.209 1.209 22 H -0.237 1.237 23 H -0.191 1.191 24 C 0.018 3.982 25 C -0.163 4.163 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.249 0.751 40 H 0.248 0.752 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.042 0.958 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.022 3.403 22.487 33.080 hybrid contribution -0.125 0.406 -0.749 0.861 sum -24.147 3.809 21.738 32.713 Atomic orbital electron populations 1.22914 0.80505 1.03279 1.00911 1.87967 1.20822 1.28341 1.95195 1.21530 0.92812 0.83228 0.95430 1.22370 1.02415 1.01312 0.96934 1.22531 1.02472 1.01453 0.97756 1.21768 0.93252 1.02962 0.96518 1.21183 0.77957 1.00369 0.98630 1.44965 1.07968 1.66094 1.19871 1.16212 0.82311 0.78719 0.83112 1.90901 1.66782 1.57070 1.37367 1.45066 1.04386 1.66452 1.22115 1.20528 0.93003 0.94111 0.85097 1.22237 0.99216 0.98879 0.96623 1.21264 0.87780 0.95012 0.95961 1.44540 1.03457 1.45045 1.41328 1.18911 0.85591 1.38612 0.94059 0.91968 1.25822 0.98623 0.99839 0.98434 1.69943 1.32198 1.40486 1.17345 0.86064 0.80121 0.79000 0.78137 1.20872 1.23745 1.19061 1.21117 0.99662 0.90308 0.87147 1.22142 0.94049 1.01416 0.98644 0.93458 0.89438 0.92488 0.89943 0.91505 0.91591 0.92936 0.91398 0.90086 0.89664 0.87619 0.92738 0.93567 0.75074 0.75182 0.91852 0.91643 0.92774 0.93230 0.95837 0.92995 0.94971 0.91059 0.88546 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.21 113.37 1.16 1.39 16 2 O -0.40 -6.82 9.88 -148.98 -1.47 -8.29 16 3 C 0.11 1.34 0.82 -10.79 -0.01 1.34 16 4 C -0.17 -1.37 8.25 71.98 0.59 -0.78 16 5 C -0.18 -2.27 7.76 71.98 0.56 -1.71 16 6 C -0.11 -1.24 4.62 30.59 0.14 -1.10 16 7 C 0.14 2.77 5.08 86.38 0.44 3.21 16 8 N -0.73 -14.07 5.56 -478.52 -2.66 -16.73 16 9 C 0.70 19.80 8.53 179.05 1.53 21.32 16 10 O -0.64 -24.99 16.01 -3.98 -0.06 -25.06 16 11 N -0.73 -17.84 5.08 -457.61 -2.33 -20.16 16 12 C 0.18 5.60 2.41 45.03 0.11 5.71 16 13 C -0.13 -4.82 5.66 30.68 0.17 -4.65 16 14 C 0.13 5.70 4.20 86.36 0.36 6.06 16 15 N -0.62 -29.32 2.77 -699.09 -1.94 -31.25 16 16 C -0.24 -13.70 10.03 84.03 0.84 -12.86 16 17 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 18 C -0.03 -1.92 5.23 84.86 0.44 -1.47 16 19 N -0.95 -60.36 13.97 21.65 0.30 -60.06 16 20 Si 0.94 48.51 24.34 68.60 1.67 50.18 16 21 H -0.28 -14.10 6.62 99.48 0.66 -13.44 16 22 H -0.31 -16.08 7.11 99.48 0.71 -15.38 16 23 H -0.27 -13.42 6.64 99.48 0.66 -12.76 16 24 C 0.14 5.29 6.52 86.37 0.56 5.85 16 25 C -0.12 -3.49 5.55 30.67 0.17 -3.32 16 26 H 0.05 0.51 6.42 -2.39 -0.02 0.49 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.48 6.42 -2.39 -0.02 0.47 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.47 6.54 -2.38 -0.02 0.46 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.87 6.35 -2.38 -0.02 0.85 16 33 H 0.07 0.72 6.54 -2.39 -0.02 0.70 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 1.21 6.35 -2.38 -0.02 1.19 16 38 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 39 H 0.41 4.71 8.49 -92.71 -0.79 3.92 16 40 H 0.41 6.98 8.62 -92.71 -0.80 6.19 16 41 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 42 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.05 2.48 4.50 -2.39 -0.01 2.47 16 45 H 0.02 1.09 7.07 -2.38 -0.02 1.07 16 46 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 47 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 49 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -77.33 379.40 -0.16 -77.49 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -0.74 Total: 14.90 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 7.07 Total: 18.99 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -6.62 Total: -128.20 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.54 Total: -33.35 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.67 Total: 50.18 kcal Total: -77.33 -0.16 -77.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868226222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.130 kcal (2) G-P(sol) polarization free energy of solvation -77.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds