Wall clock time and date at job start Tue Mar 31 2020 11:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46940 * 2 1 4 4 H 1.09006 * 109.53864 * 57.55235 * 3 2 1 5 5 C 1.53090 * 109.50908 * 297.44119 * 3 2 1 6 6 O 1.43018 * 109.25737 * 183.22038 * 5 3 2 7 7 C 1.43013 * 113.74156 * 58.66632 * 6 5 3 8 8 C 1.53097 * 109.25992 * 301.33135 * 7 6 5 9 9 N 1.47011 * 109.50310 * 177.65522 * 3 2 1 10 10 C 1.46902 * 111.00515 * 302.32782 * 9 3 2 11 11 C 1.53000 * 109.47314 * 167.59596 * 10 9 3 12 12 N 1.46500 * 109.46891 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99798 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00069 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99663 * 179.97438 * 13 12 11 16 16 C 1.46510 * 119.99552 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46832 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47131 * 180.02562 * 17 16 15 19 19 C 1.50691 * 109.47533 * 179.97438 * 18 17 16 20 20 H 1.08007 * 120.00275 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00521 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47554 * 89.99584 * 23 21 19 25 25 H 1.48508 * 109.47086 * 209.99662 * 23 21 19 26 26 H 1.48507 * 109.47178 * 329.99598 * 23 21 19 27 27 H 1.09000 * 109.46857 * 186.48260 * 1 2 3 28 28 H 1.08996 * 109.46513 * 306.48315 * 1 2 3 29 29 H 1.08999 * 109.46964 * 66.47755 * 1 2 3 30 30 H 1.08997 * 109.46900 * 240.00710 * 2 1 3 31 31 H 1.08997 * 109.46941 * 120.00403 * 2 1 3 32 32 H 1.09002 * 109.50751 * 303.14873 * 5 3 2 33 33 H 1.08998 * 109.50924 * 63.28153 * 5 3 2 34 34 H 1.09000 * 109.50466 * 61.26760 * 7 6 5 35 35 H 1.09001 * 109.50788 * 181.35286 * 7 6 5 36 36 H 1.09006 * 109.50618 * 296.91575 * 8 7 6 37 37 H 1.08996 * 109.50654 * 176.78563 * 8 7 6 38 38 H 1.09001 * 109.46657 * 47.59763 * 10 9 3 39 39 H 1.08997 * 109.47465 * 287.59965 * 10 9 3 40 40 H 1.09000 * 109.46899 * 300.00098 * 11 10 9 41 41 H 1.08991 * 109.47105 * 60.00472 * 11 10 9 42 42 H 0.97003 * 120.00502 * 0.02562 * 12 11 10 43 43 H 0.96997 * 120.00610 * 0.02562 * 15 13 12 44 44 H 1.08992 * 109.47107 * 300.00194 * 16 15 13 45 45 H 1.08997 * 109.46870 * 60.00725 * 16 15 13 46 46 H 1.09003 * 109.47001 * 300.00312 * 17 16 15 47 47 H 1.08996 * 109.47317 * 60.00149 * 17 16 15 48 48 H 1.09003 * 109.47233 * 299.99925 * 18 17 16 49 49 H 1.09006 * 109.47063 * 59.99722 * 18 17 16 50 50 H 0.96999 * 120.00448 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9700 0.8669 5 6 1.5835 2.1462 -1.2807 6 8 2.1254 3.4694 -1.3107 7 6 3.5540 3.5079 -1.2576 8 6 4.0305 2.8180 0.0233 9 7 3.5091 1.4438 0.0567 10 6 3.9908 0.7267 1.2449 11 6 5.4951 0.4790 1.1161 12 7 5.9753 -0.2366 2.3008 13 6 7.2781 -0.5651 2.4076 14 8 8.0549 -0.2671 1.5210 15 7 7.7199 -1.2230 3.4978 16 6 9.1362 -1.5796 3.6141 17 6 9.3701 -2.3146 4.9354 18 6 10.8491 -2.6864 5.0573 19 6 11.0797 -3.4099 6.3589 20 1 10.2539 -3.5865 7.0323 21 6 12.3450 -3.8455 6.6909 22 7 13.3507 -3.6301 5.8713 23 14 12.6307 -4.7429 8.3040 24 1 12.4522 -6.2025 8.0970 25 1 14.0114 -4.4759 8.7813 26 1 11.6556 -4.2637 9.3165 27 1 -0.3633 -1.0211 0.1160 28 1 -0.3632 0.6110 0.8263 29 1 -0.3633 0.4101 -0.9423 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.9367 1.5886 -2.1481 33 1 0.4949 2.1982 -1.2991 34 1 3.9644 2.9898 -2.1243 35 1 3.8905 4.5446 -1.2602 36 1 3.6641 3.3674 0.8906 37 1 5.1201 2.7944 0.0403 38 1 3.4712 -0.2278 1.3286 39 1 3.7960 1.3256 2.1345 40 1 5.6898 -0.1199 0.2265 41 1 6.0146 1.4335 1.0324 42 1 5.3555 -0.4747 3.0080 43 1 7.1003 -1.4604 4.2053 44 1 9.4171 -2.2272 2.7837 45 1 9.7420 -0.6738 3.5897 46 1 9.0889 -1.6672 5.7660 47 1 8.7642 -3.2204 4.9595 48 1 11.1307 -3.3337 4.2266 49 1 11.4547 -1.7804 5.0333 50 1 14.2409 -3.9369 6.1046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875236700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:48 Heat of formation + Delta-G solvation = -87.989779 kcal Electronic energy + Delta-G solvation = -25679.022422 eV Core-core repulsion = 21933.727062 eV Total energy + Delta-G solvation = -3745.295360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44999 -39.71866 -36.97467 -35.63359 -34.96783 -34.02007 -33.26531 -31.26820 -30.28005 -29.48659 -26.97834 -25.97626 -25.30119 -23.17710 -22.35796 -22.04360 -20.90680 -20.54494 -20.26433 -18.09322 -17.19041 -16.77016 -16.52113 -16.11827 -15.96562 -15.55681 -15.28230 -15.01378 -14.86195 -14.54241 -14.35156 -14.14282 -13.99489 -13.75325 -13.52838 -13.35594 -12.90778 -12.28453 -12.22769 -12.18082 -12.01054 -11.80105 -11.74737 -11.64636 -11.30324 -11.12566 -10.90040 -10.83813 -10.71847 -10.59149 -10.14122 -10.01689 -9.85403 -9.44035 -9.20604 -9.12189 -8.90338 -8.59768 -8.36878 -6.01444 -4.04550 2.64022 3.30706 3.34697 3.37164 3.37616 3.39866 3.42781 4.18385 4.31323 4.35349 4.42407 4.47707 4.58113 4.65933 4.69781 4.76089 4.85274 4.92112 4.95190 5.07154 5.16859 5.23917 5.27025 5.34230 5.39257 5.47399 5.50318 5.62406 5.63293 5.67672 5.74967 5.78360 5.82390 6.19006 6.33100 6.45927 6.51225 6.53488 6.63067 6.69783 6.80481 7.02831 7.06511 7.64308 7.77268 7.97462 8.14467 8.38375 8.75373 9.02117 9.59483 11.09809 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.001691 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.278375 B =16551.074008 C =17165.816906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.050 3.950 4 H 0.051 0.949 5 C 0.068 3.932 6 O -0.387 6.387 7 C 0.063 3.937 8 C 0.013 3.987 9 N -0.528 5.528 10 C 0.039 3.961 11 C 0.144 3.856 12 N -0.753 5.753 13 C 0.701 3.299 14 O -0.592 6.592 15 N -0.742 5.742 16 C 0.135 3.865 17 C -0.120 4.120 18 C 0.023 3.977 19 C -0.522 4.522 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.393 0.607 43 H 0.393 0.607 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.019 0.981 49 H 0.019 0.981 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.256 11.773 -12.862 33.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.059 4.059 4 H 0.069 0.931 5 C -0.009 4.009 6 O -0.305 6.305 7 C -0.014 4.014 8 C -0.115 4.115 9 N -0.254 5.254 10 C -0.089 4.089 11 C 0.019 3.981 12 N -0.410 5.410 13 C 0.401 3.599 14 O -0.469 6.469 15 N -0.396 5.396 16 C 0.012 3.988 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.226 0.774 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.238 11.956 -14.152 32.941 hybrid contribution -0.393 -0.579 2.391 2.491 sum -27.631 11.377 -11.761 32.113 Atomic orbital electron populations 1.21813 0.95152 1.02213 1.02007 1.21634 0.95900 0.94953 1.03354 1.22369 0.87392 0.97295 0.98806 0.93106 1.22766 0.98786 0.83202 0.96116 1.87995 1.20567 1.27209 1.94716 1.22691 0.80922 1.01201 0.96600 1.22914 1.01604 0.88463 0.98525 1.62060 1.08352 1.15158 1.39819 1.22362 0.95571 0.99676 0.91299 1.21002 0.92135 0.97019 0.87896 1.45002 1.08297 1.63870 1.23806 1.15967 0.81920 0.79003 0.83054 1.90926 1.54874 1.60194 1.40953 1.45385 1.11845 1.61428 1.20937 1.21514 0.78190 0.99552 0.99571 1.21888 1.01864 0.98481 0.93586 1.19031 0.88289 0.96880 0.97227 1.21202 0.93930 1.36743 1.04195 0.92669 1.25034 0.96246 0.96188 0.97040 1.69964 1.00207 1.46655 1.36386 0.86579 0.77439 0.80026 0.83837 1.20675 1.21207 1.19933 0.92151 0.92611 0.92384 0.90642 0.91196 0.92095 0.88324 0.91981 0.88258 0.93726 0.88847 0.89309 0.94001 0.90778 0.91822 0.77373 0.77353 0.91934 0.91962 0.92795 0.92772 0.96219 0.96224 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.44 37.16 0.35 -0.29 16 2 C -0.12 -0.64 5.24 -26.73 -0.14 -0.78 16 3 C 0.05 0.32 2.08 -67.60 -0.14 0.18 16 4 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 5 C 0.07 0.45 5.91 37.20 0.22 0.67 16 6 O -0.39 -3.32 10.83 -35.23 -0.38 -3.70 16 7 C 0.06 0.44 7.01 37.21 0.26 0.70 16 8 C 0.01 0.09 5.45 -3.71 -0.02 0.07 16 9 N -0.53 -3.92 4.52 -226.34 -1.02 -4.94 16 10 C 0.04 0.28 4.89 -3.82 -0.02 0.26 16 11 C 0.14 1.42 5.66 -4.04 -0.02 1.39 16 12 N -0.75 -7.98 5.56 -65.23 -0.36 -8.35 16 13 C 0.70 10.76 8.57 -86.92 -0.74 10.01 16 14 O -0.59 -11.79 16.34 5.29 0.09 -11.70 16 15 N -0.74 -10.76 5.56 -65.22 -0.36 -11.12 16 16 C 0.13 2.42 5.67 -4.04 -0.02 2.40 16 17 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 18 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 19 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 20 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 23 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.21 6.92 -51.93 -0.36 -0.15 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.37 6.00 -51.93 -0.31 0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.51 6.82 -51.93 -0.35 0.16 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.68 6.48 -51.93 -0.34 0.34 16 38 H 0.09 0.55 5.61 -51.93 -0.29 0.26 16 39 H 0.04 0.29 8.09 -51.93 -0.42 -0.14 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.69 6.60 -51.93 -0.34 0.35 16 42 H 0.39 2.94 8.49 -40.82 -0.35 2.59 16 43 H 0.39 4.47 8.49 -40.82 -0.35 4.12 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 393.36 15.07 5.93 5.93 Total: -1.00 -33.99 393.36 -10.36 -44.35 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.99 Total: -0.02 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.97 Total: -0.81 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -1.01 Total: -50.52 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.29 Total: -15.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.99 -10.36 -44.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875236700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.642 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds