Wall clock time and date at job start Tue Mar 31 2020 11:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46940 * 2 1 4 4 H 1.09006 * 109.53864 * 57.55235 * 3 2 1 5 5 C 1.53090 * 109.50908 * 297.44119 * 3 2 1 6 6 O 1.43018 * 109.25737 * 183.22038 * 5 3 2 7 7 C 1.43013 * 113.74156 * 58.66632 * 6 5 3 8 8 C 1.53097 * 109.25992 * 301.33135 * 7 6 5 9 9 N 1.47011 * 109.50310 * 177.65522 * 3 2 1 10 10 C 1.46902 * 111.00515 * 302.32782 * 9 3 2 11 11 C 1.53000 * 109.47314 * 167.59596 * 10 9 3 12 12 N 1.46500 * 109.46891 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99798 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00069 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99663 * 179.97438 * 13 12 11 16 16 C 1.46510 * 119.99552 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46832 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47131 * 180.02562 * 17 16 15 19 19 C 1.50691 * 109.47533 * 179.97438 * 18 17 16 20 20 H 1.08007 * 120.00275 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00521 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47554 * 89.99584 * 23 21 19 25 25 H 1.48508 * 109.47086 * 209.99662 * 23 21 19 26 26 H 1.48507 * 109.47178 * 329.99598 * 23 21 19 27 27 H 1.09000 * 109.46857 * 186.48260 * 1 2 3 28 28 H 1.08996 * 109.46513 * 306.48315 * 1 2 3 29 29 H 1.08999 * 109.46964 * 66.47755 * 1 2 3 30 30 H 1.08997 * 109.46900 * 240.00710 * 2 1 3 31 31 H 1.08997 * 109.46941 * 120.00403 * 2 1 3 32 32 H 1.09002 * 109.50751 * 303.14873 * 5 3 2 33 33 H 1.08998 * 109.50924 * 63.28153 * 5 3 2 34 34 H 1.09000 * 109.50466 * 61.26760 * 7 6 5 35 35 H 1.09001 * 109.50788 * 181.35286 * 7 6 5 36 36 H 1.09006 * 109.50618 * 296.91575 * 8 7 6 37 37 H 1.08996 * 109.50654 * 176.78563 * 8 7 6 38 38 H 1.09001 * 109.46657 * 47.59763 * 10 9 3 39 39 H 1.08997 * 109.47465 * 287.59965 * 10 9 3 40 40 H 1.09000 * 109.46899 * 300.00098 * 11 10 9 41 41 H 1.08991 * 109.47105 * 60.00472 * 11 10 9 42 42 H 0.97003 * 120.00502 * 0.02562 * 12 11 10 43 43 H 0.96997 * 120.00610 * 0.02562 * 15 13 12 44 44 H 1.08992 * 109.47107 * 300.00194 * 16 15 13 45 45 H 1.08997 * 109.46870 * 60.00725 * 16 15 13 46 46 H 1.09003 * 109.47001 * 300.00312 * 17 16 15 47 47 H 1.08996 * 109.47317 * 60.00149 * 17 16 15 48 48 H 1.09003 * 109.47233 * 299.99925 * 18 17 16 49 49 H 1.09006 * 109.47063 * 59.99722 * 18 17 16 50 50 H 0.96999 * 120.00448 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9700 0.8669 5 6 1.5835 2.1462 -1.2807 6 8 2.1254 3.4694 -1.3107 7 6 3.5540 3.5079 -1.2576 8 6 4.0305 2.8180 0.0233 9 7 3.5091 1.4438 0.0567 10 6 3.9908 0.7267 1.2449 11 6 5.4951 0.4790 1.1161 12 7 5.9753 -0.2366 2.3008 13 6 7.2781 -0.5651 2.4076 14 8 8.0549 -0.2671 1.5210 15 7 7.7199 -1.2230 3.4978 16 6 9.1362 -1.5796 3.6141 17 6 9.3701 -2.3146 4.9354 18 6 10.8491 -2.6864 5.0573 19 6 11.0797 -3.4099 6.3589 20 1 10.2539 -3.5865 7.0323 21 6 12.3450 -3.8455 6.6909 22 7 13.3507 -3.6301 5.8713 23 14 12.6307 -4.7429 8.3040 24 1 12.4522 -6.2025 8.0970 25 1 14.0114 -4.4759 8.7813 26 1 11.6556 -4.2637 9.3165 27 1 -0.3633 -1.0211 0.1160 28 1 -0.3632 0.6110 0.8263 29 1 -0.3633 0.4101 -0.9423 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.9367 1.5886 -2.1481 33 1 0.4949 2.1982 -1.2991 34 1 3.9644 2.9898 -2.1243 35 1 3.8905 4.5446 -1.2602 36 1 3.6641 3.3674 0.8906 37 1 5.1201 2.7944 0.0403 38 1 3.4712 -0.2278 1.3286 39 1 3.7960 1.3256 2.1345 40 1 5.6898 -0.1199 0.2265 41 1 6.0146 1.4335 1.0324 42 1 5.3555 -0.4747 3.0080 43 1 7.1003 -1.4604 4.2053 44 1 9.4171 -2.2272 2.7837 45 1 9.7420 -0.6738 3.5897 46 1 9.0889 -1.6672 5.7660 47 1 8.7642 -3.2204 4.9595 48 1 11.1307 -3.3337 4.2266 49 1 11.4547 -1.7804 5.0333 50 1 14.2409 -3.9369 6.1046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875236700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:48 Heat of formation + Delta-G solvation = -113.782731 kcal Electronic energy + Delta-G solvation = -25680.140888 eV Core-core repulsion = 21933.727062 eV Total energy + Delta-G solvation = -3746.413827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19460 -40.75801 -37.70430 -36.97127 -35.89039 -35.18897 -34.71341 -32.98475 -30.93441 -30.21012 -28.48987 -26.96541 -25.79332 -24.86940 -23.10087 -22.61432 -22.30290 -21.92120 -20.96912 -19.27595 -18.52904 -17.82460 -17.36983 -17.11161 -16.99651 -16.52140 -16.46229 -16.02357 -15.77929 -15.61954 -15.42850 -15.17557 -15.04510 -14.52840 -14.34548 -14.24255 -13.86768 -13.71375 -13.55410 -13.40952 -12.86218 -12.74085 -12.65375 -12.53578 -12.48274 -12.35821 -12.21296 -11.76066 -11.72231 -11.66811 -11.65017 -11.35104 -11.30787 -11.14855 -10.58662 -10.54444 -10.40271 -9.77495 -9.46999 -8.18454 -6.29939 1.42286 1.43763 1.54490 1.61493 2.13271 2.42512 2.67601 2.90515 3.15231 3.40046 3.67831 3.77345 3.84416 4.00548 4.12607 4.14194 4.18560 4.24187 4.24940 4.33737 4.39463 4.51506 4.55976 4.57511 4.65558 4.74194 4.81180 4.84553 4.87201 4.91004 4.97273 4.99885 5.02275 5.18071 5.19202 5.27135 5.39664 5.42500 5.47744 5.55268 5.72451 5.85449 5.88556 5.91376 6.00563 6.15855 6.23641 6.87441 7.10846 7.39516 7.57111 8.93616 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.001691 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.278375 B =16551.074008 C =17165.816906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.054 3.946 4 H 0.048 0.952 5 C 0.065 3.935 6 O -0.404 6.404 7 C 0.062 3.938 8 C 0.014 3.986 9 N -0.539 5.539 10 C 0.050 3.950 11 C 0.148 3.852 12 N -0.730 5.730 13 C 0.698 3.302 14 O -0.641 6.641 15 N -0.729 5.729 16 C 0.149 3.851 17 C -0.100 4.100 18 C 0.022 3.978 19 C -0.540 4.540 20 H 0.067 0.933 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.260 1.260 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.413 0.587 43 H 0.413 0.587 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.069 0.931 48 H -0.008 1.008 49 H -0.008 1.008 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.698 11.360 -11.388 34.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.055 4.055 4 H 0.066 0.934 5 C -0.011 4.011 6 O -0.323 6.323 7 C -0.015 4.015 8 C -0.114 4.114 9 N -0.264 5.264 10 C -0.078 4.078 11 C 0.023 3.977 12 N -0.387 5.387 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.385 5.385 16 C 0.025 3.975 17 C -0.138 4.138 18 C -0.016 4.016 19 C -0.578 4.578 20 H 0.085 0.915 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.792 3.208 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.184 1.184 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.250 0.750 43 H 0.249 0.751 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.011 0.989 49 H 0.011 0.989 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.769 11.541 -12.646 34.341 hybrid contribution 0.345 -0.417 1.863 1.940 sum -29.424 11.124 -10.782 33.253 Atomic orbital electron populations 1.21798 0.94223 1.02569 1.02369 1.21604 0.96667 0.93963 1.03181 1.22372 0.86579 0.98011 0.98512 0.93437 1.22896 0.99598 0.82512 0.96134 1.87968 1.21224 1.28344 1.94786 1.22764 0.80425 1.01979 0.96345 1.22889 1.01374 0.88523 0.98594 1.62047 1.09139 1.15211 1.40030 1.22246 0.93376 1.00541 0.91588 1.20997 0.93980 0.95890 0.86807 1.44766 1.06850 1.62612 1.24506 1.16132 0.82927 0.78778 0.82428 1.90900 1.56600 1.62069 1.42691 1.45005 1.10714 1.61235 1.21521 1.21075 0.80056 0.98284 0.98117 1.21583 0.97846 0.99539 0.94809 1.18955 0.91950 0.94968 0.95687 1.21683 0.94468 1.36622 1.05063 0.91459 1.26038 0.96057 0.97131 1.01002 1.70113 1.00749 1.47987 1.38657 0.85403 0.77457 0.78736 0.79159 1.19845 1.21107 1.18405 0.91753 0.92446 0.91902 0.91215 0.90900 0.92303 0.86907 0.92244 0.87029 0.93871 0.89208 0.87944 0.93051 0.92484 0.92935 0.75036 0.75080 0.93565 0.93586 0.91315 0.91259 0.98939 0.98946 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.44 71.98 0.68 -0.29 16 2 C -0.12 -1.02 5.24 30.60 0.16 -0.85 16 3 C 0.05 0.61 2.08 44.93 0.09 0.71 16 4 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 5 C 0.07 0.79 5.91 72.01 0.43 1.22 16 6 O -0.40 -6.61 10.83 -148.98 -1.61 -8.23 16 7 C 0.06 0.83 7.01 72.01 0.50 1.34 16 8 C 0.01 0.20 5.45 86.31 0.47 0.67 16 9 N -0.54 -7.37 4.52 -869.99 -3.93 -11.30 16 10 C 0.05 0.62 4.89 86.30 0.42 1.04 16 11 C 0.15 2.77 5.66 86.38 0.49 3.26 16 12 N -0.73 -14.23 5.56 -478.54 -2.66 -16.89 16 13 C 0.70 20.83 8.57 179.05 1.53 22.37 16 14 O -0.64 -25.86 16.34 -3.99 -0.07 -25.93 16 15 N -0.73 -20.10 5.56 -478.53 -2.66 -22.76 16 16 C 0.15 5.35 5.67 86.38 0.49 5.85 16 17 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 18 C 0.02 1.15 4.97 29.84 0.15 1.30 16 19 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 20 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 21 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 22 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 23 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.34 6.92 -2.39 -0.02 0.32 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.59 6.00 -2.39 -0.01 0.58 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.99 6.82 -2.39 -0.02 0.98 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.09 1.29 6.48 -2.39 -0.02 1.28 16 38 H 0.10 1.01 5.61 -2.39 -0.01 1.00 16 39 H 0.05 0.57 8.09 -2.39 -0.02 0.55 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.13 6.60 -2.39 -0.02 1.11 16 42 H 0.41 4.95 8.49 -92.71 -0.79 4.16 16 43 H 0.41 8.21 8.49 -92.71 -0.79 7.43 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 48 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 50 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -74.38 393.36 -2.99 -77.38 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.65 Total: 15.63 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 6.27 Total: 3.29 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -8.97 Total: -107.87 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.68 Total: -34.15 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -74.38 -2.99 -77.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875236700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.405 kcal (2) G-P(sol) polarization free energy of solvation -74.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds