Wall clock time and date at job start Tue Mar 31 2020 11:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.58575 * 2 1 4 4 C 1.53190 * 109.58698 * 239.71677 * 2 1 3 5 5 C 1.53041 * 109.31677 * 185.57681 * 4 2 1 6 6 C 1.53038 * 109.53455 * 61.36331 * 5 4 2 7 7 H 1.09003 * 109.52397 * 58.60741 * 6 5 4 8 8 N 1.46503 * 109.49636 * 178.68905 * 6 5 4 9 9 C 1.34780 * 120.00070 * 204.84354 * 8 6 5 10 10 O 1.21281 * 119.99509 * 359.97438 * 9 8 6 11 11 C 1.50698 * 119.99803 * 179.97438 * 9 8 6 12 12 O 1.42905 * 109.46696 * 179.97438 * 11 9 8 13 13 C 1.42894 * 114.00033 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47496 * 179.97438 * 13 12 11 15 15 N 1.46895 * 109.46968 * 64.99509 * 14 13 12 16 16 C 1.46904 * 111.00131 * 66.05154 * 15 14 13 17 17 C 1.46901 * 110.99963 * 190.00022 * 15 14 13 18 18 C 1.53192 * 109.31654 * 298.63800 * 6 5 4 19 19 N 1.46921 * 108.77336 * 54.63244 * 18 6 5 20 20 C 1.36938 * 120.62825 * 126.41477 * 19 18 6 21 21 H 1.08003 * 120.00228 * 221.19353 * 20 19 18 22 22 C 1.38818 * 120.00121 * 41.19049 * 20 19 18 23 23 N 1.31617 * 120.00112 * 214.87062 * 22 20 19 24 24 Si 1.86799 * 119.99688 * 34.87551 * 22 20 19 25 25 H 1.48497 * 109.47517 * 84.62404 * 24 22 20 26 26 H 1.48505 * 109.47074 * 204.63015 * 24 22 20 27 27 H 1.48507 * 109.47063 * 324.62571 * 24 22 20 28 28 H 1.09005 * 109.47406 * 180.28268 * 1 2 3 29 29 H 1.08997 * 109.47081 * 300.28458 * 1 2 3 30 30 H 1.08997 * 109.47207 * 60.28456 * 1 2 3 31 31 H 1.09003 * 109.50079 * 305.52934 * 4 2 1 32 32 H 1.09005 * 109.49860 * 65.62554 * 4 2 1 33 33 H 1.08998 * 109.46392 * 181.38970 * 5 4 2 34 34 H 1.09004 * 109.45742 * 301.35007 * 5 4 2 35 35 H 0.96996 * 120.00174 * 24.83065 * 8 6 5 36 36 H 1.08995 * 109.47190 * 299.99189 * 11 9 8 37 37 H 1.09000 * 109.47316 * 60.00332 * 11 9 8 38 38 H 1.09000 * 109.46733 * 299.99751 * 13 12 11 39 39 H 1.08998 * 109.47602 * 59.99552 * 13 12 11 40 40 H 1.08998 * 109.47188 * 184.99967 * 14 13 12 41 41 H 1.09003 * 109.46545 * 304.99893 * 14 13 12 42 42 H 1.08999 * 109.47249 * 59.99562 * 16 15 14 43 43 H 1.08996 * 109.47410 * 179.97438 * 16 15 14 44 44 H 1.09003 * 109.46691 * 299.99615 * 16 15 14 45 45 H 1.08997 * 109.46995 * 60.00494 * 17 15 14 46 46 H 1.09004 * 109.46837 * 179.97438 * 17 15 14 47 47 H 1.08995 * 109.47478 * 300.00080 * 17 15 14 48 48 H 1.09007 * 109.58682 * 294.85129 * 18 6 5 49 49 H 1.09002 * 109.70666 * 174.49575 * 18 6 5 50 50 H 0.97001 * 119.99658 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1713 6 6 3.9569 -1.6658 0.0613 7 1 3.4987 -2.6531 0.0021 8 7 5.4142 -1.8054 0.1152 9 6 5.9678 -2.8473 0.7667 10 8 5.2593 -3.6690 1.3088 11 6 7.4669 -2.9912 0.8216 12 8 7.8058 -4.1648 1.5633 13 6 9.2116 -4.3951 1.6763 14 6 9.4561 -5.6701 2.4859 15 7 8.9309 -6.8267 1.7481 16 6 9.6881 -7.0489 0.5091 17 6 8.9314 -8.0316 2.5885 18 6 3.4650 -0.9486 1.3225 19 7 2.0226 -0.7010 1.1935 20 6 1.1538 -1.1154 2.1675 21 1 0.2057 -1.5547 1.8942 22 6 1.4916 -0.9710 3.5062 23 7 1.1105 -1.8762 4.3824 24 14 2.4869 0.5080 4.0639 25 1 1.5753 1.6543 4.3092 26 1 3.2103 0.1739 5.3170 27 1 3.4666 0.8718 3.0088 28 1 -0.3634 -1.0277 0.0051 29 1 -0.3633 0.5182 0.8874 30 1 -0.3633 0.5094 -0.8925 31 1 1.6030 -1.7237 -1.2935 32 1 1.7660 -0.1641 -2.1371 33 1 3.9378 -1.3421 -2.0687 34 1 4.0061 0.1488 -1.0991 35 1 5.9808 -1.1481 -0.3182 36 1 7.8612 -3.0745 -0.1911 37 1 7.8982 -2.1168 1.3089 38 1 9.6424 -4.5077 0.6815 39 1 9.6789 -3.5495 2.1811 40 1 10.5264 -5.7980 2.6479 41 1 8.9496 -5.5923 3.4479 42 1 10.7346 -7.2345 0.7511 43 1 9.2788 -7.9112 -0.0173 44 1 9.6131 -6.1660 -0.1258 45 1 8.3062 -7.8632 3.4653 46 1 8.5374 -8.8727 2.0179 47 1 9.9504 -8.2529 2.9058 48 1 3.9903 0.0003 1.4316 49 1 3.6521 -1.5724 2.1966 50 1 1.3469 -1.7754 5.3178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132426112.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:27 Heat of formation + Delta-G solvation = -76.189640 kcal Electronic energy + Delta-G solvation = -27249.419073 eV Core-core repulsion = 23504.635405 eV Total energy + Delta-G solvation = -3744.783668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02509 -39.59867 -38.97287 -37.50079 -35.99905 -34.62926 -32.57243 -32.45652 -31.14323 -28.78065 -28.48386 -27.51931 -26.29699 -24.97188 -24.17714 -22.33547 -21.97037 -21.60178 -20.92505 -18.48906 -18.18579 -17.97597 -17.49934 -17.11496 -16.58646 -16.35979 -16.20473 -15.88372 -15.78338 -15.39704 -15.18417 -15.05304 -14.82647 -14.56119 -14.37055 -13.74561 -13.59485 -13.39307 -13.36890 -13.18001 -13.13280 -12.93198 -12.73300 -12.63831 -12.60784 -12.45715 -12.31301 -12.08072 -11.85102 -11.77802 -11.64229 -11.45899 -11.21782 -10.74898 -10.58725 -10.53133 -10.08040 -9.21316 -8.60469 -8.26618 -5.52194 1.33401 1.37574 1.46955 1.66246 1.88704 2.46547 2.88753 3.01761 3.12480 3.48158 3.80217 3.93267 4.06144 4.08483 4.14856 4.18101 4.23007 4.29427 4.32481 4.37519 4.46312 4.50022 4.51870 4.53190 4.65175 4.68319 4.73195 4.73591 4.89189 4.90026 4.98970 5.00163 5.03915 5.04376 5.08475 5.17338 5.22577 5.30762 5.51770 5.56178 5.69013 5.94008 6.03578 6.11502 6.26400 6.28667 6.68548 7.02640 7.38679 7.68017 8.16322 8.93763 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.003251 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.483274 B = 8611.012807 C = 9497.508291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.151 3.849 3 H 0.045 0.955 4 C -0.121 4.121 5 C -0.105 4.105 6 C 0.136 3.864 7 H 0.045 0.955 8 N -0.707 5.707 9 C 0.497 3.503 10 O -0.578 6.578 11 C 0.052 3.948 12 O -0.389 6.389 13 C 0.060 3.940 14 C 0.054 3.946 15 N -0.572 5.572 16 C 0.024 3.976 17 C 0.027 3.973 18 C 0.143 3.857 19 N -0.606 5.606 20 C -0.260 4.260 21 H 0.042 0.958 22 C -0.008 4.008 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.284 1.284 26 H -0.307 1.307 27 H -0.241 1.241 28 H 0.033 0.967 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.419 0.581 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.039 0.961 48 H 0.036 0.964 49 H 0.017 0.983 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.047 0.000 -14.403 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.063 0.937 4 C -0.160 4.160 5 C -0.143 4.143 6 C 0.030 3.970 7 H 0.064 0.936 8 N -0.362 5.362 9 C 0.284 3.716 10 O -0.456 6.456 11 C -0.027 4.027 12 O -0.308 6.308 13 C -0.016 4.016 14 C -0.074 4.074 15 N -0.297 5.297 16 C -0.123 4.123 17 C -0.121 4.121 18 C 0.017 3.983 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.060 0.940 22 C -0.206 4.206 23 N -0.573 5.573 24 Si 0.734 3.266 25 H -0.210 1.210 26 H -0.235 1.235 27 H -0.164 1.164 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.257 0.743 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.035 0.965 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 20.904 -0.669 -13.914 25.120 hybrid contribution 0.971 0.352 1.356 1.705 sum 21.875 -0.317 -12.558 25.225 Atomic orbital electron populations 1.21714 0.95201 1.00677 1.01059 1.20952 0.94098 0.94064 0.86184 0.93726 1.21963 0.94943 1.00673 0.98413 1.21651 0.96660 1.00429 0.95521 1.21370 0.79499 0.99026 0.97151 0.93628 1.45774 1.07370 1.27226 1.55803 1.21245 0.91684 0.80942 0.77752 1.90795 1.65050 1.43876 1.45891 1.22285 0.90047 0.90747 0.99636 1.88129 1.24661 1.43381 1.74653 1.22823 0.80910 0.97243 1.00652 1.22204 0.98684 0.89473 0.97056 1.61853 1.55651 1.05014 1.07157 1.22445 0.95617 1.02528 0.91757 1.22352 1.00342 0.92068 0.97326 1.21513 0.84759 0.96237 0.95838 1.44430 1.01979 1.65928 1.20758 1.18467 1.01414 1.33751 0.85377 0.94031 1.26186 0.98979 0.99149 0.96333 1.70215 1.50417 1.33172 1.03505 0.86318 0.79636 0.83106 0.77550 1.21039 1.23495 1.16436 0.94773 0.94364 0.89933 0.93749 0.88072 0.89310 0.89440 0.74293 0.86795 0.87587 0.91164 0.90650 0.90769 0.91562 0.94330 0.91438 0.91040 0.92441 0.91098 0.94296 0.94614 0.96458 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 8.07 71.98 0.58 -4.15 16 2 C 0.15 5.63 3.50 44.97 0.16 5.79 16 3 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.12 -3.50 5.37 30.67 0.16 -3.33 16 5 C -0.10 -2.67 5.35 30.62 0.16 -2.51 16 6 C 0.14 4.89 2.60 45.07 0.12 5.01 16 7 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 8 N -0.71 -19.79 5.08 -442.15 -2.25 -22.04 16 9 C 0.50 16.89 7.87 87.66 0.69 17.58 16 10 O -0.58 -28.47 16.16 16.00 0.26 -28.22 16 11 C 0.05 1.16 6.42 71.24 0.46 1.62 16 12 O -0.39 -11.27 9.82 -129.94 -1.28 -12.54 16 13 C 0.06 1.09 5.99 71.98 0.43 1.52 16 14 C 0.05 1.04 5.34 86.30 0.46 1.50 16 15 N -0.57 -12.76 4.97 -948.85 -4.71 -17.48 16 16 C 0.02 0.39 9.33 127.69 1.19 1.58 16 17 C 0.03 0.52 9.57 127.69 1.22 1.74 16 18 C 0.14 6.50 4.17 86.36 0.36 6.86 16 19 N -0.61 -29.36 2.47 -675.24 -1.67 -31.02 16 20 C -0.26 -15.39 8.43 84.03 0.71 -14.68 16 21 H 0.04 2.69 6.81 -2.91 -0.02 2.67 16 22 C -0.01 -0.49 4.82 84.86 0.41 -0.08 16 23 N -0.93 -62.02 13.97 21.65 0.30 -61.72 16 24 Si 0.91 47.28 27.39 68.60 1.88 49.16 16 25 H -0.28 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.31 -16.40 7.11 99.48 0.71 -15.70 16 27 H -0.24 -11.46 5.24 99.48 0.52 -10.94 16 28 H 0.03 1.37 7.38 -2.38 -0.02 1.35 16 29 H 0.04 1.56 7.71 -2.39 -0.02 1.54 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.42 7.19 8.60 -92.71 -0.80 6.39 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 0.97 6.34 -2.39 -0.02 0.95 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 41 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 42 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 44 H 0.07 1.08 6.37 -2.39 -0.02 1.07 16 45 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 46 H 0.07 1.28 8.12 -2.38 -0.02 1.26 16 47 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.04 1.52 6.71 -2.38 -0.02 1.51 16 49 H 0.02 0.95 7.01 -2.39 -0.02 0.93 16 50 H 0.26 16.51 8.31 -92.71 -0.77 15.74 16 Total: -1.00 -88.94 389.10 -0.43 -89.36 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.08 Total: 16.04 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.12 Total: 18.45 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -8.32 Total: -132.26 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.02 Total: -40.76 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.88 Total: 49.16 kcal Total: -88.94 -0.43 -89.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132426112.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.175 kcal (2) G-P(sol) polarization free energy of solvation -88.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds