Wall clock time and date at job start Tue Mar 31 2020 11:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58414 * 2 1 4 4 C 1.53191 * 109.70219 * 239.64134 * 2 1 3 5 5 C 1.53046 * 109.30815 * 185.50716 * 4 2 1 6 6 C 1.53349 * 109.60628 * 61.37573 * 5 4 2 7 7 H 1.09005 * 109.68262 * 178.74210 * 6 5 4 8 8 N 1.46505 * 109.47756 * 58.54881 * 6 5 4 9 9 C 1.34770 * 120.00153 * 155.37739 * 8 6 5 10 10 O 1.21283 * 120.00452 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99986 * 180.02562 * 9 8 6 12 12 O 1.42902 * 109.47105 * 179.97438 * 11 9 8 13 13 C 1.42903 * 113.99778 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47078 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.46605 * 64.75977 * 14 13 12 16 16 C 1.46899 * 111.00031 * 75.45853 * 15 14 13 17 17 C 1.46899 * 110.99798 * 199.40816 * 15 14 13 18 18 C 1.53192 * 109.15253 * 298.70967 * 6 5 4 19 19 N 1.46925 * 109.58424 * 120.27986 * 2 1 3 20 20 C 1.36930 * 120.63381 * 353.51702 * 19 2 1 21 21 H 1.08001 * 120.00147 * 30.07028 * 20 19 2 22 22 C 1.38815 * 120.00321 * 210.06970 * 20 19 2 23 23 N 1.31620 * 119.99764 * 15.63966 * 22 20 19 24 24 Si 1.86804 * 120.00355 * 195.64152 * 22 20 19 25 25 H 1.48496 * 109.46959 * 89.99964 * 24 22 20 26 26 H 1.48497 * 109.47048 * 209.99989 * 24 22 20 27 27 H 1.48499 * 109.47017 * 329.99837 * 24 22 20 28 28 H 1.09006 * 109.47368 * 299.72006 * 1 2 3 29 29 H 1.08993 * 109.47334 * 59.71919 * 1 2 3 30 30 H 1.08999 * 109.47370 * 179.71934 * 1 2 3 31 31 H 1.09002 * 109.49996 * 305.45694 * 4 2 1 32 32 H 1.08997 * 109.50006 * 65.55822 * 4 2 1 33 33 H 1.09004 * 109.45535 * 181.38207 * 5 4 2 34 34 H 1.08996 * 109.45836 * 301.35657 * 5 4 2 35 35 H 0.96997 * 119.99329 * 335.37330 * 8 6 5 36 36 H 1.09004 * 109.47059 * 299.99686 * 11 9 8 37 37 H 1.09002 * 109.47171 * 59.99260 * 11 9 8 38 38 H 1.08998 * 109.47553 * 300.00013 * 13 12 11 39 39 H 1.09003 * 109.46897 * 60.00172 * 13 12 11 40 40 H 1.08997 * 109.46998 * 184.75849 * 14 13 12 41 41 H 1.08995 * 109.47324 * 304.76103 * 14 13 12 42 42 H 1.08999 * 109.47537 * 59.99406 * 16 15 14 43 43 H 1.08994 * 109.47492 * 179.97438 * 16 15 14 44 44 H 1.09005 * 109.47123 * 299.99702 * 16 15 14 45 45 H 1.09005 * 109.47060 * 63.74685 * 17 15 14 46 46 H 1.09005 * 109.47142 * 183.74447 * 17 15 14 47 47 H 1.08999 * 109.47224 * 303.74957 * 17 15 14 48 48 H 1.09002 * 109.58238 * 294.72353 * 18 6 5 49 49 H 1.08994 * 109.59091 * 174.44326 * 18 6 5 50 50 H 0.96999 * 119.99953 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5706 -0.8443 -1.1673 6 6 3.9627 -1.6624 0.0691 7 1 5.0471 -1.7643 0.1131 8 7 3.3490 -2.9904 -0.0090 9 6 3.9033 -4.0286 0.6477 10 8 4.9105 -3.8637 1.3029 11 6 3.2723 -5.3947 0.5668 12 8 4.0388 -6.3199 1.3405 13 6 3.5228 -7.6526 1.3315 14 6 4.4178 -8.5518 2.1867 15 7 4.3549 -8.1148 3.5878 16 6 3.0902 -8.5265 4.2115 17 6 5.5058 -8.6193 4.3487 18 6 3.4653 -0.9424 1.3266 19 7 2.0225 -0.6980 1.1954 20 6 1.1534 -1.1124 2.1690 21 1 0.1413 -1.3851 1.9090 22 6 1.5732 -1.1821 3.4903 23 7 2.6788 -0.5726 3.8625 24 14 0.5691 -2.1408 4.7402 25 1 1.0386 -3.5492 4.7768 26 1 0.7351 -1.5287 6.0829 27 1 -0.8645 -2.1067 4.3544 28 1 -0.3634 0.5095 0.8925 29 1 -0.3633 0.5181 -0.8874 30 1 -0.3634 -1.0276 -0.0050 31 1 1.6080 -1.7258 -1.2904 32 1 1.7689 -0.1674 -2.1365 33 1 3.9430 -1.3409 -2.0633 34 1 4.0071 0.1519 -1.0962 35 1 2.5437 -3.1223 -0.5333 36 1 2.2556 -5.3490 0.9571 37 1 3.2482 -5.7229 -0.4723 38 1 2.5116 -7.6535 1.7382 39 1 3.5033 -8.0276 0.3082 40 1 4.0738 -9.5833 2.1120 41 1 5.4459 -8.4850 1.8311 42 1 3.0063 -9.6128 4.1800 43 1 3.0701 -8.1908 5.2482 44 1 2.2559 -8.0819 3.6689 45 1 6.4235 -8.1892 3.9473 46 1 5.4004 -8.3374 5.3964 47 1 5.5475 -9.7054 4.2670 48 1 3.9886 0.0077 1.4346 49 1 3.6526 -1.5643 2.2019 50 1 2.9720 -0.6210 4.7859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132426113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:31 Heat of formation + Delta-G solvation = -49.848769 kcal Electronic energy + Delta-G solvation = -28029.413833 eV Core-core repulsion = 24285.772391 eV Total energy + Delta-G solvation = -3743.641442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.44319 -38.29020 -37.42672 -36.32813 -33.97948 -32.66055 -30.96816 -30.12608 -29.81444 -27.63697 -27.27845 -25.87382 -24.81831 -23.99841 -22.11817 -21.10338 -20.80339 -20.19792 -18.66386 -16.92454 -16.66606 -16.41143 -16.14458 -15.31347 -15.22092 -15.04845 -14.80752 -14.54429 -14.00860 -13.86248 -13.66592 -13.45314 -13.15565 -12.79784 -12.58968 -12.50657 -12.39581 -12.18273 -12.14966 -11.75692 -11.73071 -11.36785 -11.16691 -11.11913 -10.91272 -10.87849 -10.82754 -10.66062 -10.33606 -10.27145 -9.90915 -9.49194 -9.46240 -9.40616 -9.07414 -8.37666 -8.32336 -8.25376 -6.52784 -5.68351 -3.13380 3.24428 3.37353 3.44304 3.49128 3.52720 3.88302 4.32507 4.56370 4.95768 4.99772 5.16358 5.20889 5.25494 5.32754 5.36509 5.37600 5.38740 5.41059 5.49791 5.52688 5.54970 5.55741 5.58717 5.65181 5.76582 5.86509 5.90083 6.05922 6.15578 6.20169 6.36668 6.39034 6.48403 6.57515 6.65238 6.75418 6.94087 6.97337 6.99021 7.09467 7.17211 7.30853 7.48649 7.77456 7.90249 8.21681 8.56363 8.94820 9.30192 9.94786 10.51473 11.39585 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.004447 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.430813 B = 6295.006429 C = 7625.742371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.121 3.879 7 H 0.075 0.925 8 N -0.702 5.702 9 C 0.514 3.486 10 O -0.524 6.524 11 C 0.045 3.955 12 O -0.344 6.344 13 C 0.065 3.935 14 C 0.058 3.942 15 N -0.537 5.537 16 C 0.023 3.977 17 C 0.028 3.972 18 C 0.162 3.838 19 N -0.582 5.582 20 C -0.253 4.253 21 H 0.067 0.933 22 C 0.009 3.991 23 N -0.897 5.897 24 Si 0.894 3.106 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.281 1.281 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.393 0.607 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.021 0.979 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.020 0.980 48 H 0.024 0.976 49 H 0.095 0.905 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 -13.132 -9.081 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.016 3.984 7 H 0.093 0.907 8 N -0.354 5.354 9 C 0.299 3.701 10 O -0.399 6.399 11 C -0.036 4.036 12 O -0.261 6.261 13 C -0.013 4.013 14 C -0.070 4.070 15 N -0.261 5.261 16 C -0.125 4.125 17 C -0.120 4.120 18 C 0.035 3.965 19 N -0.305 5.305 20 C -0.383 4.383 21 H 0.084 0.916 22 C -0.191 4.191 23 N -0.540 5.540 24 Si 0.725 3.275 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.228 0.772 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.040 0.960 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.039 0.961 48 H 0.042 0.958 49 H 0.113 0.887 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.091 -12.417 -8.297 14.974 hybrid contribution -1.248 -1.492 0.380 1.982 sum -0.156 -13.910 -7.916 16.005 Atomic orbital electron populations 1.21785 0.96168 1.01124 1.00141 1.20458 0.92827 0.93636 0.87258 0.95877 1.22059 0.95185 1.00626 0.99038 1.21736 0.96944 1.00113 0.96785 1.21800 0.96942 0.81626 0.98075 0.90688 1.45707 1.29889 1.08499 1.51347 1.19959 0.84883 0.85422 0.79875 1.90705 1.25026 1.84705 1.39488 1.22196 0.95934 0.89521 0.95902 1.88131 1.50440 1.17046 1.70496 1.22537 0.97159 0.83667 0.97895 1.22135 1.01251 0.95065 0.88541 1.61821 1.02514 1.60080 1.01655 1.22452 0.92242 0.97376 1.00444 1.22375 0.93993 0.96793 0.98861 1.21161 0.83723 0.96980 0.94621 1.44025 1.02646 1.64858 1.19012 1.19039 0.95163 1.38128 0.85961 0.91570 1.25071 0.97747 0.99241 0.97018 1.69983 1.24245 1.43113 1.16683 0.86419 0.79530 0.80333 0.81253 1.21292 1.21842 1.20646 0.92043 0.94518 0.93036 0.92697 0.92952 0.93094 0.91179 0.77250 0.90582 0.91425 0.93271 0.93194 0.93311 0.89898 0.96044 0.91242 0.91295 0.91092 0.91376 0.96147 0.95783 0.88702 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.96 37.16 0.30 -2.14 16 2 C 0.16 3.25 3.49 -67.60 -0.24 3.02 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.05 5.22 -26.61 -0.14 -2.19 16 5 C -0.12 -1.87 5.59 -26.53 -0.15 -2.01 16 6 C 0.12 2.36 2.83 -67.65 -0.19 2.17 16 7 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 8 N -0.70 -12.69 4.92 -53.53 -0.26 -12.95 16 9 C 0.51 10.20 7.87 -10.99 -0.09 10.12 16 10 O -0.52 -12.87 16.16 -14.36 -0.23 -13.11 16 11 C 0.04 0.70 6.42 36.01 0.23 0.93 16 12 O -0.34 -5.93 9.82 -55.14 -0.54 -6.47 16 13 C 0.07 0.81 6.12 37.16 0.23 1.03 16 14 C 0.06 0.67 5.38 -3.82 -0.02 0.65 16 15 N -0.54 -7.29 4.89 -251.26 -1.23 -8.52 16 16 C 0.02 0.27 9.39 60.06 0.56 0.83 16 17 C 0.03 0.32 9.51 60.06 0.57 0.89 16 18 C 0.16 3.93 4.87 -3.71 -0.02 3.92 16 19 N -0.58 -13.94 2.90 -164.77 -0.48 -14.42 16 20 C -0.25 -6.72 8.56 -15.06 -0.13 -6.85 16 21 H 0.07 1.71 6.25 -52.49 -0.33 1.39 16 22 C 0.01 0.25 4.93 -17.43 -0.09 0.16 16 23 N -0.90 -26.89 11.26 55.49 0.62 -26.27 16 24 Si 0.89 22.36 29.58 -169.99 -5.03 17.33 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.06 1.23 7.63 -51.93 -0.40 0.83 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.93 7.43 -51.93 -0.39 0.54 16 31 H 0.05 0.84 6.41 -51.93 -0.33 0.51 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.39 6.15 6.78 -40.82 -0.28 5.87 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.58 6.78 -51.93 -0.35 0.23 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.45 7.96 -51.93 -0.41 0.03 16 41 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 42 H 0.02 0.21 8.09 -51.93 -0.42 -0.21 16 43 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 44 H 0.07 0.82 6.79 -51.93 -0.35 0.47 16 45 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 46 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 47 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.09 2.75 6.16 -51.93 -0.32 2.43 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -34.24 388.82 -9.46 -43.70 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -9.01 Total: 4.31 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 0.84 Total: 10.53 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -1.35 Total: -62.16 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.77 Total: -19.57 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.24 -9.46 -43.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132426113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.147 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds