Wall clock time and date at job start Tue Mar 31 2020 11:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58414 * 2 1 4 4 C 1.53191 * 109.70219 * 239.64134 * 2 1 3 5 5 C 1.53046 * 109.30815 * 185.50716 * 4 2 1 6 6 C 1.53349 * 109.60628 * 61.37573 * 5 4 2 7 7 H 1.09005 * 109.68262 * 178.74210 * 6 5 4 8 8 N 1.46505 * 109.47756 * 58.54881 * 6 5 4 9 9 C 1.34770 * 120.00153 * 155.37739 * 8 6 5 10 10 O 1.21283 * 120.00452 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99986 * 180.02562 * 9 8 6 12 12 O 1.42902 * 109.47105 * 179.97438 * 11 9 8 13 13 C 1.42903 * 113.99778 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47078 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.46605 * 64.75977 * 14 13 12 16 16 C 1.46899 * 111.00031 * 75.45853 * 15 14 13 17 17 C 1.46899 * 110.99798 * 199.40816 * 15 14 13 18 18 C 1.53192 * 109.15253 * 298.70967 * 6 5 4 19 19 N 1.46925 * 109.58424 * 120.27986 * 2 1 3 20 20 C 1.36930 * 120.63381 * 353.51702 * 19 2 1 21 21 H 1.08001 * 120.00147 * 30.07028 * 20 19 2 22 22 C 1.38815 * 120.00321 * 210.06970 * 20 19 2 23 23 N 1.31620 * 119.99764 * 15.63966 * 22 20 19 24 24 Si 1.86804 * 120.00355 * 195.64152 * 22 20 19 25 25 H 1.48496 * 109.46959 * 89.99964 * 24 22 20 26 26 H 1.48497 * 109.47048 * 209.99989 * 24 22 20 27 27 H 1.48499 * 109.47017 * 329.99837 * 24 22 20 28 28 H 1.09006 * 109.47368 * 299.72006 * 1 2 3 29 29 H 1.08993 * 109.47334 * 59.71919 * 1 2 3 30 30 H 1.08999 * 109.47370 * 179.71934 * 1 2 3 31 31 H 1.09002 * 109.49996 * 305.45694 * 4 2 1 32 32 H 1.08997 * 109.50006 * 65.55822 * 4 2 1 33 33 H 1.09004 * 109.45535 * 181.38207 * 5 4 2 34 34 H 1.08996 * 109.45836 * 301.35657 * 5 4 2 35 35 H 0.96997 * 119.99329 * 335.37330 * 8 6 5 36 36 H 1.09004 * 109.47059 * 299.99686 * 11 9 8 37 37 H 1.09002 * 109.47171 * 59.99260 * 11 9 8 38 38 H 1.08998 * 109.47553 * 300.00013 * 13 12 11 39 39 H 1.09003 * 109.46897 * 60.00172 * 13 12 11 40 40 H 1.08997 * 109.46998 * 184.75849 * 14 13 12 41 41 H 1.08995 * 109.47324 * 304.76103 * 14 13 12 42 42 H 1.08999 * 109.47537 * 59.99406 * 16 15 14 43 43 H 1.08994 * 109.47492 * 179.97438 * 16 15 14 44 44 H 1.09005 * 109.47123 * 299.99702 * 16 15 14 45 45 H 1.09005 * 109.47060 * 63.74685 * 17 15 14 46 46 H 1.09005 * 109.47142 * 183.74447 * 17 15 14 47 47 H 1.08999 * 109.47224 * 303.74957 * 17 15 14 48 48 H 1.09002 * 109.58238 * 294.72353 * 18 6 5 49 49 H 1.08994 * 109.59091 * 174.44326 * 18 6 5 50 50 H 0.96999 * 119.99953 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5706 -0.8443 -1.1673 6 6 3.9627 -1.6624 0.0691 7 1 5.0471 -1.7643 0.1131 8 7 3.3490 -2.9904 -0.0090 9 6 3.9033 -4.0286 0.6477 10 8 4.9105 -3.8637 1.3029 11 6 3.2723 -5.3947 0.5668 12 8 4.0388 -6.3199 1.3405 13 6 3.5228 -7.6526 1.3315 14 6 4.4178 -8.5518 2.1867 15 7 4.3549 -8.1148 3.5878 16 6 3.0902 -8.5265 4.2115 17 6 5.5058 -8.6193 4.3487 18 6 3.4653 -0.9424 1.3266 19 7 2.0225 -0.6980 1.1954 20 6 1.1534 -1.1124 2.1690 21 1 0.1413 -1.3851 1.9090 22 6 1.5732 -1.1821 3.4903 23 7 2.6788 -0.5726 3.8625 24 14 0.5691 -2.1408 4.7402 25 1 1.0386 -3.5492 4.7768 26 1 0.7351 -1.5287 6.0829 27 1 -0.8645 -2.1067 4.3544 28 1 -0.3634 0.5095 0.8925 29 1 -0.3633 0.5181 -0.8874 30 1 -0.3634 -1.0276 -0.0050 31 1 1.6080 -1.7258 -1.2904 32 1 1.7689 -0.1674 -2.1365 33 1 3.9430 -1.3409 -2.0633 34 1 4.0071 0.1519 -1.0962 35 1 2.5437 -3.1223 -0.5333 36 1 2.2556 -5.3490 0.9571 37 1 3.2482 -5.7229 -0.4723 38 1 2.5116 -7.6535 1.7382 39 1 3.5033 -8.0276 0.3082 40 1 4.0738 -9.5833 2.1120 41 1 5.4459 -8.4850 1.8311 42 1 3.0063 -9.6128 4.1800 43 1 3.0701 -8.1908 5.2482 44 1 2.2559 -8.0819 3.6689 45 1 6.4235 -8.1892 3.9473 46 1 5.4004 -8.3374 5.3964 47 1 5.5475 -9.7054 4.2670 48 1 3.9886 0.0077 1.4346 49 1 3.6526 -1.5643 2.2019 50 1 2.9720 -0.6210 4.7859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132426113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:30 Heat of formation + Delta-G solvation = -75.066783 kcal Electronic energy + Delta-G solvation = -28030.507368 eV Core-core repulsion = 24285.772391 eV Total energy + Delta-G solvation = -3744.734977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.98492 -39.51578 -38.82351 -37.48273 -35.71011 -34.47177 -32.45802 -31.73776 -31.12072 -28.61571 -28.48761 -27.59497 -26.53651 -24.94018 -23.86678 -22.32388 -22.03410 -21.77428 -20.34745 -18.39581 -18.13622 -17.72589 -17.45281 -17.02299 -16.49256 -16.28348 -15.94791 -15.80821 -15.69365 -15.39770 -15.18999 -14.93439 -14.63956 -14.37230 -13.99591 -13.68298 -13.59729 -13.35355 -13.17855 -13.15882 -12.97425 -12.82415 -12.64269 -12.61765 -12.53862 -12.39012 -12.31525 -12.08841 -12.03966 -11.84994 -11.54473 -11.18660 -11.02832 -10.69861 -10.57477 -10.49743 -9.89357 -9.21294 -8.54958 -7.80278 -5.26327 1.40478 1.44842 1.51021 1.75514 2.06478 2.51808 3.00757 3.15636 3.36208 3.65863 3.87017 4.05796 4.09747 4.12484 4.14645 4.20320 4.23884 4.31176 4.36718 4.43241 4.50809 4.51603 4.53723 4.63002 4.68503 4.71159 4.77058 4.85825 4.87542 4.97288 4.99266 4.99892 5.07518 5.12409 5.15076 5.30367 5.35972 5.60777 5.64588 5.72707 5.76369 5.78172 6.04434 6.10745 6.30408 6.46393 6.77934 7.20612 7.46807 7.95348 8.46640 9.24891 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.004447 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.430813 B = 6295.006429 C = 7625.742371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.152 3.848 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.130 3.870 7 H 0.060 0.940 8 N -0.689 5.689 9 C 0.502 3.498 10 O -0.583 6.583 11 C 0.052 3.948 12 O -0.385 6.385 13 C 0.059 3.941 14 C 0.057 3.943 15 N -0.576 5.576 16 C 0.025 3.975 17 C 0.030 3.970 18 C 0.172 3.828 19 N -0.594 5.594 20 C -0.235 4.235 21 H 0.079 0.921 22 C -0.056 4.056 23 N -0.938 5.938 24 Si 0.949 3.051 25 H -0.297 1.297 26 H -0.303 1.303 27 H -0.257 1.257 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.042 0.958 48 H -0.007 1.007 49 H 0.041 0.959 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 -14.919 -12.545 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.024 3.976 7 H 0.078 0.922 8 N -0.341 5.341 9 C 0.289 3.711 10 O -0.463 6.463 11 C -0.027 4.027 12 O -0.304 6.304 13 C -0.017 4.017 14 C -0.070 4.070 15 N -0.301 5.301 16 C -0.123 4.123 17 C -0.118 4.118 18 C 0.045 3.955 19 N -0.318 5.318 20 C -0.366 4.366 21 H 0.097 0.903 22 C -0.251 4.251 23 N -0.585 5.585 24 Si 0.779 3.221 25 H -0.224 1.224 26 H -0.231 1.231 27 H -0.181 1.181 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.247 0.753 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.011 0.989 49 H 0.060 0.940 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.160 -14.213 -11.831 18.529 hybrid contribution -0.573 -0.885 1.410 1.761 sum -1.734 -15.097 -10.420 18.426 Atomic orbital electron populations 1.21715 0.94552 1.01483 1.00731 1.20797 0.94264 0.93120 0.87098 0.97202 1.21949 0.94512 1.01266 0.97926 1.21705 0.97428 0.99680 0.95822 1.21493 0.96110 0.82487 0.97557 0.92169 1.45590 1.30145 1.07568 1.50844 1.20922 0.84218 0.87367 0.78577 1.90678 1.27827 1.85834 1.41951 1.22212 0.95097 0.86896 0.98528 1.88091 1.51700 1.19208 1.71354 1.22823 0.97218 0.81665 1.00015 1.22212 1.01036 0.96390 0.87392 1.61803 1.03562 1.61708 1.03025 1.22416 0.91398 0.98736 0.99724 1.22340 0.93049 0.98029 0.98387 1.20812 0.84366 0.95035 0.95280 1.44253 1.02018 1.65557 1.19941 1.19422 0.95602 1.35377 0.86156 0.90313 1.25790 0.98998 1.01134 0.99160 1.70170 1.26487 1.45828 1.16029 0.85520 0.79534 0.78185 0.78874 1.22444 1.23050 1.18120 0.94831 0.90596 0.92714 0.91389 0.89085 0.89373 0.91186 0.75337 0.89744 0.86641 0.92943 0.89875 0.90337 0.90540 0.93730 0.92040 0.91893 0.92091 0.91673 0.93947 0.98941 0.94022 0.95016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.96 71.98 0.57 -3.63 16 2 C 0.15 5.69 3.49 44.97 0.16 5.84 16 3 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 4 C -0.12 -3.19 5.22 30.67 0.16 -3.03 16 5 C -0.11 -3.10 5.59 30.73 0.17 -2.93 16 6 C 0.13 5.03 2.83 45.17 0.13 5.16 16 7 H 0.06 2.52 7.58 -2.38 -0.02 2.50 16 8 N -0.69 -23.98 4.92 -441.66 -2.17 -26.15 16 9 C 0.50 19.88 7.87 87.66 0.69 20.57 16 10 O -0.58 -29.93 16.16 16.00 0.26 -29.67 16 11 C 0.05 1.53 6.42 71.24 0.46 1.99 16 12 O -0.38 -12.96 9.82 -129.94 -1.28 -14.23 16 13 C 0.06 1.34 6.12 71.98 0.44 1.78 16 14 C 0.06 1.24 5.38 86.30 0.46 1.70 16 15 N -0.58 -15.38 4.89 -948.84 -4.64 -20.03 16 16 C 0.03 0.57 9.39 127.69 1.20 1.76 16 17 C 0.03 0.67 9.51 127.69 1.21 1.88 16 18 C 0.17 8.74 4.87 86.36 0.42 9.16 16 19 N -0.59 -28.54 2.90 -675.23 -1.96 -30.50 16 20 C -0.23 -12.52 8.56 84.04 0.72 -11.81 16 21 H 0.08 3.97 6.25 -2.91 -0.02 3.95 16 22 C -0.06 -3.25 4.93 84.86 0.42 -2.83 16 23 N -0.94 -59.60 11.26 21.65 0.24 -59.35 16 24 Si 0.95 47.28 29.58 68.60 2.03 49.30 16 25 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 26 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 27 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 28 H 0.03 1.27 7.63 -2.38 -0.02 1.25 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.76 7.43 -2.39 -0.02 1.75 16 31 H 0.07 1.71 6.41 -2.39 -0.02 1.69 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.41 11.44 6.78 -92.71 -0.63 10.81 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 1.13 6.78 -2.39 -0.02 1.12 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.21 7.96 -2.39 -0.02 1.19 16 41 H 0.08 1.71 7.94 -2.39 -0.02 1.69 16 42 H 0.04 0.77 8.09 -2.39 -0.02 0.75 16 43 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 44 H 0.06 1.45 6.79 -2.38 -0.02 1.43 16 45 H 0.06 1.44 8.13 -2.38 -0.02 1.43 16 46 H 0.06 1.44 8.06 -2.38 -0.02 1.42 16 47 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 48 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 49 H 0.04 2.57 6.16 -2.39 -0.01 2.55 16 50 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -81.49 388.82 -0.03 -81.52 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.28 Total: 23.49 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 7.22 Total: 25.63 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -8.53 Total: -136.03 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.02 Total: -43.91 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -81.49 -0.03 -81.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132426113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.449 kcal (2) G-P(sol) polarization free energy of solvation -81.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds