Wall clock time and date at job start Tue Mar 31 2020 11:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00361 * 2 1 4 4 C 1.46904 * 111.00107 * 123.95467 * 2 1 3 5 5 C 1.52999 * 109.46845 * 169.99845 * 4 2 1 6 6 C 1.53006 * 109.46837 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47073 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00430 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99963 * 180.27227 * 7 6 5 10 10 C 1.46501 * 120.00065 * 179.72312 * 9 7 6 11 11 C 1.53004 * 109.46914 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.40960 * 305.00277 * 11 10 9 13 13 C 1.54303 * 109.40344 * 185.16173 * 11 10 9 14 14 N 1.48177 * 110.69453 * 200.49331 * 13 11 10 15 15 C 1.36934 * 118.51166 * 138.77220 * 14 13 11 16 16 H 1.07999 * 120.00643 * 319.23333 * 15 14 13 17 17 C 1.38812 * 119.99736 * 139.23359 * 15 14 13 18 18 N 1.31626 * 120.00047 * 156.53775 * 17 15 14 19 19 Si 1.86803 * 120.00240 * 336.54256 * 17 15 14 20 20 H 1.48495 * 109.47576 * 95.51793 * 19 17 15 21 21 H 1.48499 * 109.47116 * 215.52324 * 19 17 15 22 22 H 1.48506 * 109.46617 * 335.51894 * 19 17 15 23 23 C 1.44460 * 122.97147 * 318.80104 * 14 13 11 24 24 C 1.54871 * 109.33038 * 88.91283 * 23 14 13 25 25 C 1.47686 * 109.67836 * 290.09848 * 24 23 14 26 26 O 1.40527 * 109.40431 * 64.84264 * 11 10 9 27 27 H 1.09005 * 109.47080 * 296.04607 * 1 2 3 28 28 H 1.09006 * 109.47432 * 56.04292 * 1 2 3 29 29 H 1.08995 * 109.47300 * 176.04556 * 1 2 3 30 30 H 1.09003 * 109.47691 * 183.95344 * 3 2 1 31 31 H 1.09008 * 109.47301 * 303.95798 * 3 2 1 32 32 H 1.09006 * 109.47134 * 63.95275 * 3 2 1 33 33 H 1.09000 * 109.46594 * 49.99932 * 4 2 1 34 34 H 1.08994 * 109.46787 * 289.99840 * 4 2 1 35 35 H 1.09000 * 109.47453 * 60.00614 * 5 4 2 36 36 H 1.09002 * 109.47708 * 299.99851 * 5 4 2 37 37 H 1.09000 * 109.46778 * 59.99979 * 6 5 4 38 38 H 1.09002 * 109.46669 * 300.00266 * 6 5 4 39 39 H 0.97005 * 120.00054 * 359.73080 * 9 7 6 40 40 H 1.08997 * 109.47483 * 300.00430 * 10 9 7 41 41 H 1.09001 * 109.47099 * 60.00517 * 10 9 7 42 42 H 1.09002 * 109.23184 * 320.80746 * 13 11 10 43 43 H 1.08996 * 109.22523 * 80.22487 * 13 11 10 44 44 H 0.96996 * 119.99661 * 180.02562 * 18 17 15 45 45 H 1.09008 * 109.49316 * 208.86972 * 23 14 13 46 46 H 1.08997 * 109.49407 * 328.95375 * 23 14 13 47 47 H 1.08997 * 109.43796 * 50.16226 * 24 23 14 48 48 H 1.09002 * 109.43789 * 170.03585 * 24 23 14 49 49 H 1.09004 * 108.64728 * 181.88180 * 25 24 23 50 50 H 1.09003 * 108.64580 * 299.72000 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9702 6 6 4.0527 -1.7537 2.1548 7 6 5.5390 -1.9397 1.9903 8 8 6.1044 -1.4787 1.0214 9 7 6.2393 -2.6226 2.9174 10 6 7.6833 -2.8087 2.7545 11 6 8.2305 -3.6123 3.9360 12 1 7.9579 -3.1173 4.8680 13 6 9.7676 -3.6964 3.8307 14 7 10.2859 -4.8313 4.6300 15 6 11.2894 -5.5986 4.1016 16 1 11.2698 -5.8680 3.0559 17 6 12.3321 -6.0303 4.9099 18 7 13.0240 -7.0993 4.5768 19 14 12.7533 -5.0941 6.4706 20 1 12.0765 -5.7317 7.6283 21 1 14.2230 -5.1187 6.6812 22 1 12.2951 -3.6873 6.3427 23 6 9.7800 -5.1653 5.9413 24 6 8.5889 -6.1447 5.7970 25 6 7.4307 -5.4368 5.2150 26 8 7.6806 -4.9053 3.9158 27 1 -0.3633 0.4513 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5089 -1.7407 1.1755 34 1 1.7975 -0.2248 2.0627 35 1 3.9909 0.0193 0.9323 36 1 3.7024 -1.4966 0.0450 37 1 3.5661 -2.7284 2.1923 38 1 3.8546 -1.2129 3.0802 39 1 5.7873 -2.9911 3.6926 40 1 7.8779 -3.3479 1.8275 41 1 8.1732 -1.8356 2.7185 42 1 10.0490 -3.8343 2.7867 43 1 10.2040 -2.7686 4.2006 44 1 13.7523 -7.4011 5.1419 45 1 10.5696 -5.6366 6.5266 46 1 9.4460 -4.2579 6.4442 47 1 8.8748 -6.9699 5.1449 48 1 8.3196 -6.5352 6.7784 49 1 6.5932 -6.1317 5.1522 50 1 7.1521 -4.6190 5.8797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150192654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:28 Heat of formation + Delta-G solvation = -54.593033 kcal Electronic energy + Delta-G solvation = -26633.684610 eV Core-core repulsion = 22889.837441 eV Total energy + Delta-G solvation = -3743.847169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.91823 -38.96079 -37.93629 -35.45766 -34.74252 -33.49792 -32.41512 -31.69816 -29.32081 -27.99718 -27.74008 -25.95427 -25.24540 -23.49412 -22.29988 -21.24376 -21.11125 -20.46482 -19.81904 -17.28063 -16.64945 -16.56564 -16.29642 -16.21305 -15.77474 -15.45396 -15.27760 -14.97121 -14.53638 -14.50382 -14.05752 -13.58345 -13.48258 -13.23100 -12.88688 -12.77755 -12.62259 -12.47615 -12.36959 -12.17837 -12.08333 -11.95362 -11.73346 -11.69899 -11.54692 -11.11113 -10.94667 -10.87692 -10.55255 -10.36130 -10.15110 -9.95748 -9.79669 -9.64455 -9.05091 -9.01446 -8.74000 -8.50634 -6.77855 -6.00942 -3.43519 2.63991 3.11269 3.28097 3.44334 3.49443 3.62652 4.06857 4.50397 4.52946 4.63533 4.75051 4.79667 4.81310 4.97399 5.04344 5.10510 5.21421 5.22282 5.23459 5.29173 5.32035 5.33141 5.35525 5.45825 5.47355 5.50965 5.60061 5.73386 5.75285 5.84529 5.87938 6.03571 6.08045 6.08636 6.21924 6.36970 6.42801 6.52121 6.63522 6.64499 6.66024 6.72009 6.98978 7.48624 7.74132 8.08998 8.22205 8.40773 9.02642 9.70750 10.07356 11.14481 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.035135 B = 0.002200 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.734126 B =12722.718940 C =13024.794124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.020 3.980 4 C 0.054 3.946 5 C -0.101 4.101 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.542 6.542 9 N -0.724 5.724 10 C 0.122 3.878 11 C 0.065 3.935 12 H 0.054 0.946 13 C 0.130 3.870 14 N -0.597 5.597 15 C -0.270 4.270 16 H 0.076 0.924 17 C 0.038 3.962 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.287 1.287 21 H -0.300 1.300 22 H -0.271 1.271 23 C 0.146 3.854 24 C -0.180 4.180 25 C 0.079 3.921 26 O -0.356 6.356 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.400 0.600 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.029 0.971 44 H 0.263 0.737 45 H 0.058 0.942 46 H 0.029 0.971 47 H 0.081 0.919 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.952 12.939 -0.928 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.128 4.128 4 C -0.074 4.074 5 C -0.140 4.140 6 C -0.180 4.180 7 C 0.296 3.704 8 O -0.419 6.419 9 N -0.375 5.375 10 C -0.002 4.002 11 C 0.005 3.995 12 H 0.072 0.928 13 C 0.004 3.996 14 N -0.319 5.319 15 C -0.399 4.399 16 H 0.094 0.906 17 C -0.163 4.163 18 N -0.537 5.537 19 Si 0.705 3.295 20 H -0.215 1.215 21 H -0.228 1.228 22 H -0.196 1.196 23 C 0.020 3.980 24 C -0.220 4.220 25 C 0.002 3.998 26 O -0.274 6.274 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.099 0.901 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -23.274 12.854 -2.212 26.679 hybrid contribution -0.042 0.633 2.461 2.542 sum -23.316 13.487 0.249 26.937 Atomic orbital electron populations 1.22385 0.87309 1.02303 1.00415 1.61937 1.07756 1.14170 1.43313 1.22467 1.01549 0.88532 1.00292 1.22183 0.95846 0.98244 0.91133 1.21330 0.93398 1.01106 0.98128 1.21620 0.92555 1.02853 1.00967 1.20625 0.89467 0.77829 0.82436 1.90716 1.71797 1.49229 1.30197 1.45974 1.09467 1.56206 1.25883 1.21559 0.79586 0.99652 0.99385 1.22794 0.95835 0.84280 0.96586 0.92775 1.21880 0.89683 0.90629 0.97400 1.43785 1.40518 1.31416 1.16206 1.18797 0.98721 1.25270 0.97099 0.90637 1.25530 0.96162 0.96644 0.97945 1.69898 1.22786 1.21539 1.39481 0.86957 0.76658 0.81977 0.83941 1.21460 1.22770 1.19550 1.21084 0.94385 0.94773 0.87808 1.22170 0.97768 1.01859 1.00196 1.21370 0.97246 0.97062 0.84109 1.87475 1.81986 1.30327 1.27598 0.95775 0.91356 0.91304 0.90682 0.91460 0.95732 0.90646 0.94832 0.91092 0.90156 0.88773 0.89200 0.76676 0.90312 0.90291 0.91349 0.95308 0.92722 0.92428 0.95224 0.90061 0.92174 0.91084 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.06 0.57 0.73 16 2 N -0.55 -4.47 5.02 -251.25 -1.26 -5.73 16 3 C 0.02 0.14 9.32 60.06 0.56 0.70 16 4 C 0.05 0.40 4.96 -3.82 -0.02 0.38 16 5 C -0.10 -0.91 4.43 -26.73 -0.12 -1.03 16 6 C -0.14 -1.12 5.70 -27.88 -0.16 -1.28 16 7 C 0.51 6.23 7.83 -10.99 -0.09 6.14 16 8 O -0.54 -8.89 15.98 5.55 0.09 -8.80 16 9 N -0.72 -8.40 5.49 -60.29 -0.33 -8.73 16 10 C 0.12 1.71 5.24 -4.04 -0.02 1.69 16 11 C 0.07 1.01 2.35 -26.05 -0.06 0.95 16 12 H 0.05 0.76 7.20 -51.93 -0.37 0.38 16 13 C 0.13 2.53 6.12 -2.44 -0.01 2.52 16 14 N -0.60 -13.92 2.11 -171.48 -0.36 -14.28 16 15 C -0.27 -7.51 9.67 -15.06 -0.15 -7.66 16 16 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 17 C 0.04 1.08 5.20 -17.43 -0.09 0.99 16 18 N -0.90 -27.21 13.97 55.49 0.78 -26.43 16 19 Si 0.87 21.90 25.27 -169.99 -4.30 17.61 16 20 H -0.29 -6.93 6.71 56.52 0.38 -6.55 16 21 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.15 3.08 4.47 -4.14 -0.02 3.06 16 24 C -0.18 -3.25 6.03 -28.31 -0.17 -3.42 16 25 C 0.08 1.18 6.04 34.59 0.21 1.39 16 26 O -0.36 -6.05 9.77 -34.10 -0.33 -6.39 16 27 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.59 6.47 -51.93 -0.34 0.26 16 31 H 0.07 0.43 8.12 -51.92 -0.42 0.01 16 32 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 34 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 35 H 0.07 0.71 6.51 -51.93 -0.34 0.37 16 36 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.71 8.46 -40.82 -0.35 3.37 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.38 7.75 -51.93 -0.40 0.98 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.06 1.35 3.66 -51.92 -0.19 1.16 16 46 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 47 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.03 0.44 7.27 -51.93 -0.38 0.06 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -33.44 387.32 -8.56 -42.00 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -9.12 Total: -0.27 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 0.44 Total: 5.18 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -1.18 Total: -55.17 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.24 Total: -15.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.30 Total: 17.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.44 -8.56 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150192654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.589 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds