Wall clock time and date at job start Tue Mar 31 2020 11:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00361 * 2 1 4 4 C 1.46904 * 111.00107 * 123.95467 * 2 1 3 5 5 C 1.52999 * 109.46845 * 169.99845 * 4 2 1 6 6 C 1.53006 * 109.46837 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47073 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00430 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99963 * 180.27227 * 7 6 5 10 10 C 1.46501 * 120.00065 * 179.72312 * 9 7 6 11 11 C 1.53004 * 109.46914 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.40960 * 305.00277 * 11 10 9 13 13 C 1.54303 * 109.40344 * 185.16173 * 11 10 9 14 14 N 1.48177 * 110.69453 * 200.49331 * 13 11 10 15 15 C 1.36934 * 118.51166 * 138.77220 * 14 13 11 16 16 H 1.07999 * 120.00643 * 319.23333 * 15 14 13 17 17 C 1.38812 * 119.99736 * 139.23359 * 15 14 13 18 18 N 1.31626 * 120.00047 * 156.53775 * 17 15 14 19 19 Si 1.86803 * 120.00240 * 336.54256 * 17 15 14 20 20 H 1.48495 * 109.47576 * 95.51793 * 19 17 15 21 21 H 1.48499 * 109.47116 * 215.52324 * 19 17 15 22 22 H 1.48506 * 109.46617 * 335.51894 * 19 17 15 23 23 C 1.44460 * 122.97147 * 318.80104 * 14 13 11 24 24 C 1.54871 * 109.33038 * 88.91283 * 23 14 13 25 25 C 1.47686 * 109.67836 * 290.09848 * 24 23 14 26 26 O 1.40527 * 109.40431 * 64.84264 * 11 10 9 27 27 H 1.09005 * 109.47080 * 296.04607 * 1 2 3 28 28 H 1.09006 * 109.47432 * 56.04292 * 1 2 3 29 29 H 1.08995 * 109.47300 * 176.04556 * 1 2 3 30 30 H 1.09003 * 109.47691 * 183.95344 * 3 2 1 31 31 H 1.09008 * 109.47301 * 303.95798 * 3 2 1 32 32 H 1.09006 * 109.47134 * 63.95275 * 3 2 1 33 33 H 1.09000 * 109.46594 * 49.99932 * 4 2 1 34 34 H 1.08994 * 109.46787 * 289.99840 * 4 2 1 35 35 H 1.09000 * 109.47453 * 60.00614 * 5 4 2 36 36 H 1.09002 * 109.47708 * 299.99851 * 5 4 2 37 37 H 1.09000 * 109.46778 * 59.99979 * 6 5 4 38 38 H 1.09002 * 109.46669 * 300.00266 * 6 5 4 39 39 H 0.97005 * 120.00054 * 359.73080 * 9 7 6 40 40 H 1.08997 * 109.47483 * 300.00430 * 10 9 7 41 41 H 1.09001 * 109.47099 * 60.00517 * 10 9 7 42 42 H 1.09002 * 109.23184 * 320.80746 * 13 11 10 43 43 H 1.08996 * 109.22523 * 80.22487 * 13 11 10 44 44 H 0.96996 * 119.99661 * 180.02562 * 18 17 15 45 45 H 1.09008 * 109.49316 * 208.86972 * 23 14 13 46 46 H 1.08997 * 109.49407 * 328.95375 * 23 14 13 47 47 H 1.08997 * 109.43796 * 50.16226 * 24 23 14 48 48 H 1.09002 * 109.43789 * 170.03585 * 24 23 14 49 49 H 1.09004 * 108.64728 * 181.88180 * 25 24 23 50 50 H 1.09003 * 108.64580 * 299.72000 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9702 6 6 4.0527 -1.7537 2.1548 7 6 5.5390 -1.9397 1.9903 8 8 6.1044 -1.4787 1.0214 9 7 6.2393 -2.6226 2.9174 10 6 7.6833 -2.8087 2.7545 11 6 8.2305 -3.6123 3.9360 12 1 7.9579 -3.1173 4.8680 13 6 9.7676 -3.6964 3.8307 14 7 10.2859 -4.8313 4.6300 15 6 11.2894 -5.5986 4.1016 16 1 11.2698 -5.8680 3.0559 17 6 12.3321 -6.0303 4.9099 18 7 13.0240 -7.0993 4.5768 19 14 12.7533 -5.0941 6.4706 20 1 12.0765 -5.7317 7.6283 21 1 14.2230 -5.1187 6.6812 22 1 12.2951 -3.6873 6.3427 23 6 9.7800 -5.1653 5.9413 24 6 8.5889 -6.1447 5.7970 25 6 7.4307 -5.4368 5.2150 26 8 7.6806 -4.9053 3.9158 27 1 -0.3633 0.4513 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5089 -1.7407 1.1755 34 1 1.7975 -0.2248 2.0627 35 1 3.9909 0.0193 0.9323 36 1 3.7024 -1.4966 0.0450 37 1 3.5661 -2.7284 2.1923 38 1 3.8546 -1.2129 3.0802 39 1 5.7873 -2.9911 3.6926 40 1 7.8779 -3.3479 1.8275 41 1 8.1732 -1.8356 2.7185 42 1 10.0490 -3.8343 2.7867 43 1 10.2040 -2.7686 4.2006 44 1 13.7523 -7.4011 5.1419 45 1 10.5696 -5.6366 6.5266 46 1 9.4460 -4.2579 6.4442 47 1 8.8748 -6.9699 5.1449 48 1 8.3196 -6.5352 6.7784 49 1 6.5932 -6.1317 5.1522 50 1 7.1521 -4.6190 5.8797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150192654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:27 Heat of formation + Delta-G solvation = -80.539333 kcal Electronic energy + Delta-G solvation = -26634.809726 eV Core-core repulsion = 22889.837441 eV Total energy + Delta-G solvation = -3744.972285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99768 -40.20901 -38.54069 -37.09947 -35.94028 -34.24856 -33.84646 -33.60472 -30.68168 -28.72123 -28.44061 -27.31532 -26.82744 -24.53353 -23.53564 -22.54885 -21.90998 -21.68479 -21.01022 -18.70068 -18.21522 -17.81559 -17.49450 -17.16173 -16.96689 -16.36105 -16.14037 -16.01272 -15.69081 -15.53857 -15.22184 -15.06997 -14.82906 -14.51417 -14.23069 -14.06357 -13.90022 -13.59748 -13.33641 -13.26574 -13.09490 -12.78694 -12.77207 -12.66295 -12.56489 -12.29091 -12.27851 -12.19870 -11.88853 -11.81917 -11.52936 -11.51596 -11.37905 -10.93826 -10.62672 -10.37162 -10.07777 -9.27521 -8.68784 -8.21375 -5.60927 1.29192 1.40628 1.52150 1.70577 2.19171 2.40902 2.86842 3.03899 3.07515 3.31805 3.78211 3.99811 4.01586 4.04576 4.11143 4.13741 4.17178 4.27835 4.33307 4.44364 4.52345 4.53384 4.57021 4.60194 4.61741 4.68340 4.70199 4.75582 4.78011 4.81446 4.83603 5.01294 5.01450 5.03881 5.04257 5.12143 5.17828 5.21889 5.36429 5.47190 5.47767 5.96267 6.10302 6.14627 6.16994 6.52723 6.60964 7.04441 7.31760 7.65522 8.00390 8.98722 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.035135 B = 0.002200 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.734126 B =12722.718940 C =13024.794124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.571 5.571 3 C 0.021 3.979 4 C 0.059 3.941 5 C -0.097 4.097 6 C -0.127 4.127 7 C 0.506 3.494 8 O -0.592 6.592 9 N -0.712 5.712 10 C 0.131 3.869 11 C 0.081 3.919 12 H 0.088 0.912 13 C 0.121 3.879 14 N -0.608 5.608 15 C -0.262 4.262 16 H 0.025 0.975 17 C -0.020 4.020 18 N -0.948 5.948 19 Si 0.949 3.051 20 H -0.269 1.269 21 H -0.308 1.308 22 H -0.258 1.258 23 C 0.135 3.865 24 C -0.172 4.172 25 C 0.072 3.928 26 O -0.377 6.377 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.415 0.585 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.263 0.737 45 H 0.032 0.968 46 H 0.065 0.935 47 H 0.035 0.965 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.185 14.672 2.016 30.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.295 5.295 3 C -0.127 4.127 4 C -0.069 4.069 5 C -0.135 4.135 6 C -0.167 4.167 7 C 0.294 3.706 8 O -0.473 6.473 9 N -0.364 5.364 10 C 0.006 3.994 11 C 0.021 3.979 12 H 0.105 0.895 13 C -0.004 4.004 14 N -0.332 5.332 15 C -0.392 4.392 16 H 0.043 0.957 17 C -0.217 4.217 18 N -0.592 5.592 19 Si 0.777 3.223 20 H -0.196 1.196 21 H -0.237 1.237 22 H -0.182 1.182 23 C 0.009 3.991 24 C -0.212 4.212 25 C -0.004 4.004 26 O -0.295 6.295 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.252 0.748 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.572 14.598 0.771 30.328 hybrid contribution 0.930 0.050 1.435 1.711 sum -25.642 14.648 2.206 29.614 Atomic orbital electron populations 1.22408 0.86152 1.02807 1.00947 1.61929 1.08960 1.14551 1.44045 1.22438 1.00807 0.88546 1.00912 1.22137 0.94385 0.98913 0.91437 1.21241 0.94758 1.00039 0.97473 1.21628 0.88998 1.04381 1.01732 1.21417 0.91112 0.76648 0.81421 1.90704 1.73080 1.51254 1.32227 1.45825 1.08292 1.55894 1.26423 1.21266 0.81395 0.99165 0.97570 1.22603 0.92551 0.84344 0.98409 0.89467 1.22044 0.93046 0.89687 0.95593 1.43880 1.39982 1.32033 1.17282 1.18604 1.00205 1.25216 0.95208 0.95697 1.26188 0.96171 0.97217 1.02098 1.70041 1.23976 1.23474 1.41704 0.85765 0.75686 0.80797 0.80091 1.19597 1.23661 1.18239 1.21257 0.94752 0.96793 0.86278 1.22098 0.97881 1.00003 1.01251 1.21546 0.96362 0.98681 0.83771 1.87488 1.81699 1.31047 1.29306 0.95065 0.91021 0.90809 0.91910 0.90954 0.95004 0.89592 0.93523 0.92637 0.92930 0.86396 0.85995 0.74783 0.93216 0.89926 0.93784 0.93876 0.92807 0.94960 0.91651 0.94643 0.89047 0.88593 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.57 127.69 1.22 1.48 16 2 N -0.57 -8.50 5.02 -948.83 -4.76 -13.26 16 3 C 0.02 0.29 9.32 127.69 1.19 1.48 16 4 C 0.06 0.74 4.96 86.30 0.43 1.16 16 5 C -0.10 -1.61 4.43 30.60 0.14 -1.48 16 6 C -0.13 -1.65 5.70 29.85 0.17 -1.48 16 7 C 0.51 11.48 7.83 87.65 0.69 12.17 16 8 O -0.59 -19.51 15.98 -3.04 -0.05 -19.56 16 9 N -0.71 -14.61 5.49 -463.06 -2.54 -17.15 16 10 C 0.13 3.50 5.24 86.38 0.45 3.96 16 11 C 0.08 2.30 2.35 31.04 0.07 2.37 16 12 H 0.09 1.96 7.20 -2.39 -0.02 1.94 16 13 C 0.12 4.65 6.12 86.50 0.53 5.18 16 14 N -0.61 -28.17 2.11 -696.45 -1.47 -29.64 16 15 C -0.26 -15.17 9.67 84.03 0.81 -14.36 16 16 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 17 C -0.02 -1.19 5.20 84.86 0.44 -0.75 16 18 N -0.95 -60.02 13.97 21.65 0.30 -59.72 16 19 Si 0.95 45.71 25.27 68.60 1.73 47.44 16 20 H -0.27 -12.11 6.71 99.48 0.67 -11.44 16 21 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.13 5.34 4.47 87.40 0.39 5.73 16 24 C -0.17 -5.80 6.03 29.57 0.18 -5.62 16 25 C 0.07 1.87 6.04 70.32 0.42 2.30 16 26 O -0.38 -11.93 9.77 -144.93 -1.42 -13.35 16 27 H 0.03 0.29 8.14 -2.38 -0.02 0.27 16 28 H 0.07 0.69 8.12 -2.38 -0.02 0.67 16 29 H 0.07 0.69 8.12 -2.39 -0.02 0.68 16 30 H 0.06 0.99 6.47 -2.39 -0.02 0.98 16 31 H 0.07 0.87 8.12 -2.38 -0.02 0.85 16 32 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.09 0.89 8.06 -2.39 -0.02 0.87 16 34 H 0.05 0.47 8.12 -2.39 -0.02 0.45 16 35 H 0.05 1.09 6.51 -2.39 -0.02 1.07 16 36 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.42 5.89 8.46 -92.70 -0.78 5.10 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 41 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.04 1.85 7.75 -2.39 -0.02 1.84 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 45 H 0.03 1.44 3.66 -2.38 -0.01 1.43 16 46 H 0.07 2.13 8.10 -2.39 -0.02 2.12 16 47 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 49 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 50 H 0.07 1.40 7.27 -2.39 -0.02 1.38 16 Total: -1.00 -78.19 387.32 -0.99 -79.18 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.08 Total: 13.91 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 7.13 Total: 12.15 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -8.47 Total: -119.76 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.46 Total: -32.91 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.73 Total: 47.44 kcal Total: -78.19 -0.99 -79.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150192654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.361 kcal (2) G-P(sol) polarization free energy of solvation -78.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds