Wall clock time and date at job start Tue Mar 31 2020 10:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46708 * 2 1 4 4 C 1.53008 * 109.46708 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46884 * 179.97438 * 4 3 2 6 6 C 1.47016 * 110.99833 * 46.36314 * 5 4 3 7 7 C 1.53098 * 109.25650 * 182.39270 * 6 5 4 8 8 O 1.43015 * 109.29196 * 303.17322 * 7 6 5 9 9 C 1.43020 * 113.73974 * 58.60103 * 8 7 6 10 10 C 1.47015 * 110.99903 * 169.99610 * 5 4 3 11 11 H 1.09001 * 109.54105 * 297.56723 * 10 5 4 12 12 C 1.50700 * 109.50332 * 57.67213 * 10 5 4 13 13 O 1.21280 * 120.00301 * 359.78006 * 12 10 5 14 14 N 1.34779 * 119.99674 * 179.78149 * 12 10 5 15 15 C 1.46499 * 119.99772 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47137 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47559 * 179.97438 * 16 15 14 18 18 N 1.46495 * 109.47142 * 179.97438 * 17 16 15 19 19 C 1.36942 * 119.99715 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99980 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99942 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99973 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99871 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47470 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47102 * 120.00217 * 23 21 19 26 26 H 1.48497 * 109.47272 * 240.00017 * 23 21 19 27 27 H 1.09001 * 109.46502 * 60.00385 * 1 2 3 28 28 H 1.08996 * 109.46617 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47307 * 300.00256 * 1 2 3 30 30 H 1.08996 * 109.47307 * 239.99744 * 2 1 3 31 31 H 1.09004 * 109.46910 * 119.98983 * 2 1 3 32 32 H 1.08996 * 109.47446 * 59.99828 * 3 2 1 33 33 H 1.09001 * 109.47325 * 299.99111 * 3 2 1 34 34 H 1.08996 * 109.47307 * 59.99744 * 4 3 2 35 35 H 1.09000 * 109.46459 * 299.99066 * 4 3 2 36 36 H 1.09000 * 109.50473 * 302.32301 * 6 5 4 37 37 H 1.09002 * 109.50845 * 62.45887 * 6 5 4 38 38 H 1.09009 * 109.50876 * 63.08417 * 7 6 5 39 39 H 1.09000 * 109.51066 * 183.21557 * 7 6 5 40 40 H 1.09002 * 109.50941 * 181.44210 * 9 8 7 41 41 H 1.09003 * 109.50633 * 61.35674 * 9 8 7 42 42 H 0.96999 * 120.00273 * 359.97438 * 14 12 10 43 43 H 1.09000 * 109.47328 * 299.99526 * 15 14 12 44 44 H 1.08998 * 109.47208 * 59.99975 * 15 14 12 45 45 H 1.09003 * 109.47098 * 299.99981 * 16 15 14 46 46 H 1.08998 * 109.47114 * 59.99891 * 16 15 14 47 47 H 1.08995 * 109.46680 * 300.00174 * 17 16 15 48 48 H 1.08998 * 109.46909 * 59.99872 * 17 16 15 49 49 H 0.96995 * 120.00633 * 0.02562 * 18 17 16 50 50 H 0.96998 * 120.00193 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 0.0006 5 7 4.0597 2.8276 0.0000 6 6 3.3418 3.6406 0.9926 7 6 3.8403 5.0861 0.9169 8 8 5.2558 5.1091 1.1199 9 6 5.9863 4.3272 0.1709 10 6 5.5095 2.8740 0.2390 11 1 5.7298 2.4644 1.2249 12 6 6.2192 2.0617 -0.8134 13 8 5.5808 1.4958 -1.6755 14 7 7.5633 1.9639 -0.7965 15 6 8.2532 1.1747 -1.8199 16 6 9.7623 1.2273 -1.5732 17 6 10.4829 0.4026 -2.6416 18 7 11.9278 0.4535 -2.4057 19 6 12.7819 -0.2157 -3.2411 20 1 12.3903 -0.7807 -4.0741 21 6 14.1511 -0.1679 -3.0172 22 7 14.6283 0.5202 -2.0018 23 14 15.3161 -1.0814 -4.1563 24 1 14.5345 -1.7740 -5.2122 25 1 16.2511 -0.1152 -4.7867 26 1 16.0890 -2.0809 -3.3761 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6768 1.9564 -0.8901 34 1 3.9338 0.9286 -0.8890 35 1 3.9329 0.9290 0.8910 36 1 2.2729 3.6127 0.7813 37 1 3.5268 3.2436 1.9907 38 1 3.6072 5.5008 -0.0639 39 1 3.3522 5.6804 1.6894 40 1 7.0502 4.3725 0.4039 41 1 5.8162 4.7195 -0.8318 42 1 8.0739 2.4168 -0.1072 43 1 7.9134 0.1402 -1.7714 44 1 8.0313 1.5842 -2.8054 45 1 10.1025 2.2618 -1.6215 46 1 9.9838 0.8176 -0.5878 47 1 10.1426 -0.6317 -2.5929 48 1 10.2614 0.8120 -3.6273 49 1 12.2796 0.9606 -1.6574 50 1 15.5850 0.5533 -1.8452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163275167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:35 Heat of formation + Delta-G solvation = -73.221112 kcal Electronic energy + Delta-G solvation = -26296.110364 eV Core-core repulsion = 22551.455421 eV Total energy + Delta-G solvation = -3744.654943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84057 -38.93078 -37.03138 -36.01048 -34.51224 -34.38530 -32.45246 -31.55397 -29.97777 -29.38814 -26.88584 -25.70192 -24.64363 -23.02076 -22.73357 -21.71159 -21.22341 -20.76154 -20.07574 -17.72523 -16.97227 -16.82123 -16.60227 -16.12766 -15.90902 -15.56817 -15.17834 -15.02942 -14.81821 -14.46074 -14.41027 -14.19944 -13.80486 -13.30027 -13.25900 -13.14493 -12.82484 -12.76654 -12.44418 -12.26241 -11.94232 -11.67150 -11.59974 -11.39028 -11.27389 -11.00275 -10.98291 -10.94544 -10.79595 -10.71335 -10.63550 -10.22881 -10.04823 -9.75831 -9.59532 -9.13762 -8.90122 -8.65224 -6.95217 -5.78922 -3.07902 2.43328 2.84790 3.31421 3.42613 3.48368 3.50651 3.57743 4.35082 4.43519 4.53471 4.57616 4.62988 4.65315 4.68833 4.77941 4.83949 4.89823 5.06762 5.09391 5.15428 5.27013 5.29258 5.30869 5.35141 5.37006 5.48774 5.53560 5.55816 5.58335 5.59173 5.76089 5.82085 5.93449 5.99478 6.02672 6.05775 6.15808 6.29332 6.41622 6.52331 6.64890 6.68980 6.76228 6.80431 7.37328 7.69231 8.09261 8.40022 9.51246 10.08162 10.42710 11.44104 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.002109 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.318505 B =13272.151556 C =14504.120884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.040 3.960 5 N -0.514 5.514 6 C 0.012 3.988 7 C 0.060 3.940 8 O -0.379 6.379 9 C 0.075 3.925 10 C 0.030 3.970 11 H 0.075 0.925 12 C 0.519 3.481 13 O -0.520 6.520 14 N -0.726 5.726 15 C 0.124 3.876 16 C -0.138 4.138 17 C 0.156 3.844 18 N -0.734 5.734 19 C -0.240 4.240 20 H 0.072 0.928 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.027 0.973 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.400 0.600 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.021 0.979 48 H 0.022 0.978 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.973 7.221 9.175 30.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.087 4.087 5 N -0.240 5.240 6 C -0.116 4.116 7 C -0.017 4.017 8 O -0.297 6.297 9 C -0.003 4.003 10 C -0.082 4.082 11 H 0.093 0.907 12 C 0.303 3.697 13 O -0.395 6.395 14 N -0.378 5.378 15 C 0.000 4.000 16 C -0.176 4.176 17 C 0.028 3.972 18 N -0.378 5.378 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.045 0.955 36 H 0.114 0.886 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.235 0.765 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.039 0.961 48 H 0.040 0.960 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -28.374 6.998 8.074 30.319 hybrid contribution 1.158 -0.663 0.687 1.500 sum -27.216 6.335 8.761 29.285 Atomic orbital electron populations 1.21756 0.95758 1.01601 1.01697 1.21481 0.95845 0.96621 1.02265 1.21745 0.94678 0.97072 1.02234 1.22614 0.95090 0.88067 1.02905 1.62086 1.01006 1.12571 1.48316 1.22957 1.00140 0.94404 0.94083 1.22755 0.81259 0.95355 1.02359 1.88024 1.18318 1.69452 1.53870 1.22603 0.96386 0.87172 0.94121 1.22329 0.90384 0.97857 0.97677 0.90690 1.20128 0.82325 0.81316 0.85894 1.90625 1.65256 1.46310 1.37353 1.46102 1.06366 1.52927 1.32399 1.21378 0.91958 0.95637 0.91025 1.21951 0.92441 1.01981 1.01242 1.20515 0.85614 0.96225 0.94816 1.42343 0.99510 1.61213 1.34747 1.19295 0.87806 1.23433 1.06547 0.91026 1.24764 0.96875 1.00877 0.98621 1.69668 1.12391 1.45585 1.30628 0.86090 0.81073 0.78986 0.79892 1.20503 1.21832 1.21847 0.92657 0.92760 0.92953 0.91601 0.92245 0.92224 0.91021 0.86862 0.95513 0.88569 0.93900 0.91950 0.88199 0.87734 0.91385 0.76540 0.91329 0.91176 0.91203 0.91294 0.96080 0.96025 0.78296 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.95 4.48 -26.73 -0.12 -1.07 16 4 C 0.04 0.40 4.62 -3.82 -0.02 0.39 16 5 N -0.51 -5.13 4.51 -227.72 -1.03 -6.15 16 6 C 0.01 0.09 4.94 -3.71 -0.02 0.07 16 7 C 0.06 0.44 7.01 37.21 0.26 0.70 16 8 O -0.38 -3.60 10.83 -35.23 -0.38 -3.99 16 9 C 0.07 0.66 6.16 37.21 0.23 0.89 16 10 C 0.03 0.29 2.36 -68.75 -0.16 0.13 16 11 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 12 C 0.52 6.23 6.89 -10.98 -0.08 6.16 16 13 O -0.52 -8.00 13.69 5.56 0.08 -7.92 16 14 N -0.73 -7.87 5.46 -60.29 -0.33 -8.20 16 15 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 16 C -0.14 -2.04 5.44 -26.73 -0.15 -2.18 16 17 C 0.16 3.08 6.26 -4.04 -0.03 3.05 16 18 N -0.73 -18.55 5.60 -59.91 -0.34 -18.89 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 6.28 -51.93 -0.33 0.09 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 1.45 5.48 -51.93 -0.28 1.17 16 35 H 0.03 0.27 8.08 -51.93 -0.42 -0.15 16 36 H 0.10 0.61 6.05 -51.93 -0.31 0.30 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.74 7.67 -51.93 -0.40 0.34 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.40 3.38 7.96 -40.82 -0.32 3.05 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 50 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -33.01 392.93 -9.62 -42.63 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -9.11 Total: 6.05 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.13 Total: 0.60 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.97 Total: -60.75 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.31 Total: -11.91 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.01 -9.62 -42.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163275167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.588 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds