Wall clock time and date at job start Tue Mar 31 2020 10:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99539 * 2 1 4 4 H 1.48505 * 109.46950 * 269.99478 * 3 2 1 5 5 H 1.48492 * 109.47461 * 29.99261 * 3 2 1 6 6 H 1.48504 * 109.47315 * 149.99850 * 3 2 1 7 7 C 1.37873 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00322 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99836 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.53699 * 300.10263 * 9 7 2 11 11 C 1.53117 * 109.50517 * 60.19696 * 9 7 2 12 12 C 1.53116 * 109.16598 * 177.59438 * 11 9 7 13 13 C 1.53032 * 109.27795 * 302.34925 * 12 11 9 14 14 N 1.46854 * 109.52469 * 59.17484 * 13 12 11 15 15 C 1.46897 * 110.99602 * 174.16011 * 14 13 12 16 16 H 1.08996 * 109.47600 * 64.21500 * 15 14 13 17 17 C 1.53002 * 109.46883 * 184.20946 * 15 14 13 18 18 C 1.52997 * 109.47415 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47164 * 300.00027 * 18 17 15 20 20 C 1.52999 * 109.46626 * 59.99702 * 19 18 17 21 21 H 1.09000 * 109.47160 * 60.00369 * 20 19 18 22 22 C 1.50706 * 109.46957 * 180.02562 * 20 19 18 23 23 C 1.38232 * 119.99876 * 59.72409 * 22 20 19 24 24 C 1.38242 * 119.99995 * 179.81102 * 23 22 20 25 25 C 1.38236 * 119.99675 * 0.42033 * 24 23 22 26 26 C 1.38239 * 120.00135 * 359.81774 * 25 24 23 27 27 C 1.38235 * 119.99905 * 359.97438 * 26 25 24 28 28 C 1.52996 * 109.47593 * 304.20904 * 15 14 13 29 29 C 1.46847 * 111.19559 * 298.26040 * 14 13 12 30 30 H 0.96997 * 120.00369 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.52439 * 297.50830 * 11 9 7 32 32 H 1.09007 * 109.52348 * 57.62609 * 11 9 7 33 33 H 1.09008 * 109.50149 * 62.28728 * 12 11 9 34 34 H 1.09001 * 109.50483 * 182.40573 * 12 11 9 35 35 H 1.09003 * 109.46272 * 299.16042 * 13 12 11 36 36 H 1.09004 * 109.46504 * 179.19552 * 13 12 11 37 37 H 1.09000 * 109.46986 * 60.00080 * 17 15 14 38 38 H 1.09001 * 109.47601 * 300.00803 * 17 15 14 39 39 H 1.09001 * 109.46922 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47140 * 59.99976 * 18 17 15 41 41 H 1.08993 * 109.46955 * 180.02562 * 19 18 17 42 42 H 1.09000 * 109.47050 * 300.00004 * 19 18 17 43 43 H 1.07999 * 120.00050 * 0.02562 * 23 22 20 44 44 H 1.07997 * 120.00143 * 180.21159 * 24 23 22 45 45 H 1.08002 * 120.00039 * 179.78326 * 25 24 23 46 46 H 1.07997 * 119.99672 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.99724 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47054 * 300.00396 * 28 15 14 49 49 H 1.09001 * 109.46997 * 60.00129 * 28 15 14 50 50 H 1.09005 * 109.45808 * 181.75631 * 29 14 13 51 51 H 1.09001 * 109.46015 * 301.71931 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6998 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6224 -2.5570 0.8891 11 6 0.3748 -2.5835 -1.2522 12 6 -0.3407 -3.9370 -1.2748 13 6 0.6993 -5.0590 -1.2372 14 7 1.5115 -4.9347 -0.0200 15 6 2.4285 -6.0738 0.1194 16 1 3.1426 -6.0684 -0.7040 17 6 3.1807 -5.9634 1.4472 18 6 4.1363 -7.1494 1.5923 19 6 3.3375 -8.4542 1.5656 20 6 2.5855 -8.5645 0.2378 21 1 3.2995 -8.5586 -0.5858 22 6 1.7982 -9.8493 0.2116 23 6 0.8305 -10.0865 1.1697 24 6 0.1056 -11.2634 1.1434 25 6 0.3547 -12.2067 0.1642 26 6 1.3259 -11.9716 -0.7911 27 6 2.0477 -10.7929 -0.7673 28 6 1.6294 -7.3782 0.0929 29 6 2.2451 -3.6628 0.0012 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3631 -1.7815 -1.2352 32 1 0.9988 -2.4854 -2.1406 33 1 -0.9945 -4.0176 -0.4063 34 1 -0.9331 -4.0203 -2.1860 35 1 1.3441 -4.9861 -2.1130 36 1 0.1927 -6.0241 -1.2388 37 1 2.4666 -5.9688 2.2708 38 1 3.7500 -5.0341 1.4663 39 1 4.6717 -7.0709 2.5385 40 1 4.8503 -7.1435 0.7688 41 1 4.0183 -9.2990 1.6694 42 1 2.6235 -8.4600 2.3891 43 1 0.6382 -9.3510 1.9368 44 1 -0.6528 -11.4472 1.8899 45 1 -0.2092 -13.1277 0.1456 46 1 1.5207 -12.7089 -1.5559 47 1 2.8068 -10.6095 -1.5133 48 1 0.9154 -7.3836 0.9165 49 1 1.0936 -7.4569 -0.8530 50 1 2.8611 -3.6138 0.8992 51 1 2.8826 -3.5965 -0.8804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172551070.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:36 Heat of formation + Delta-G solvation = -1.352911 kcal Electronic energy + Delta-G solvation = -26568.567600 eV Core-core repulsion = 23237.878359 eV Total energy + Delta-G solvation = -3330.689241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.10494 -38.74769 -36.88163 -33.69641 -32.63867 -31.52518 -31.03596 -30.09483 -28.87693 -28.18338 -25.00693 -23.63647 -23.20615 -22.73934 -21.87739 -20.72504 -20.32597 -19.39355 -18.53951 -17.07515 -16.37706 -15.76171 -15.35734 -14.93458 -14.57471 -14.52934 -14.15922 -14.02835 -13.75367 -13.54581 -13.34725 -13.09607 -12.91201 -12.54405 -12.52860 -12.40616 -12.18486 -11.83440 -11.47616 -11.42549 -11.28612 -11.13908 -10.92503 -10.87987 -10.71588 -10.62160 -10.44438 -10.19325 -10.11506 -9.80810 -9.75415 -9.36225 -9.04832 -8.96691 -8.75870 -8.63532 -8.26640 -7.57260 -5.94337 -4.00345 1.23659 1.27149 3.32209 3.39057 3.41978 3.65338 4.33116 4.48467 4.54829 4.67546 4.85222 4.86740 4.98423 5.02271 5.21664 5.24225 5.35444 5.36638 5.41185 5.49055 5.54374 5.55755 5.60180 5.70713 5.79602 5.87468 5.88734 5.89820 5.98090 6.10960 6.13502 6.17265 6.23942 6.28430 6.34291 6.36929 6.38587 6.43699 6.47202 6.54536 6.59602 6.65094 6.78573 6.82171 6.88373 7.05123 7.27328 7.46416 7.74962 7.79671 7.91780 8.13421 8.21909 8.52546 9.03963 9.63749 11.11621 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.002840 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.892963 B = 9858.033791 C =10486.847088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.087 3.913 16 H 0.030 0.970 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.108 4.108 20 C -0.048 4.048 21 H 0.074 0.926 22 C -0.068 4.068 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.130 4.130 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.102 4.102 29 C 0.066 3.934 30 H 0.259 0.741 31 H 0.089 0.911 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.020 0.980 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -22.391 0.584 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.068 4.068 14 N -0.258 5.258 15 C -0.021 4.021 16 H 0.048 0.952 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.067 4.067 21 H 0.093 0.907 22 C -0.068 4.068 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.140 4.140 29 C -0.061 4.061 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.734 -22.253 0.988 22.442 hybrid contribution 0.981 0.905 -0.859 1.587 sum 3.715 -21.348 0.128 21.669 Atomic orbital electron populations 1.69895 1.05818 1.26248 1.50778 1.24931 0.94813 0.98894 0.95209 0.86649 0.79905 0.83750 0.77994 1.20826 1.21263 1.19991 1.21156 0.92784 0.90744 1.50536 0.92933 1.18650 0.92627 0.90291 0.94748 0.94836 1.21649 1.00003 0.94722 0.98486 1.21669 0.97216 0.96542 1.00041 1.22083 0.95683 0.98801 0.90203 1.62026 1.24130 1.02055 1.37576 1.21527 0.93170 0.90852 0.96579 0.95185 1.21635 0.98075 0.97822 0.97656 1.21533 0.97890 0.94484 1.01589 1.21588 0.98816 0.97482 0.96631 1.20215 0.96338 0.91387 0.98733 0.90720 1.19936 0.96392 0.95618 0.94877 1.21067 0.95862 0.97256 0.98824 1.21156 0.99611 0.94229 0.98725 1.21113 0.98569 0.99402 0.95693 1.21113 0.96551 0.97338 0.98883 1.21088 1.00113 0.93977 0.98601 1.21709 0.97530 0.92182 1.02582 1.22349 0.96478 0.88515 0.98731 0.93106 0.89235 0.95300 0.92155 0.93718 0.96216 0.92043 0.91114 0.91387 0.91852 0.92271 0.92283 0.91654 0.85915 0.86235 0.86439 0.86365 0.86299 0.90924 0.91819 0.91900 0.96636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 11.36 55.43 0.63 -24.91 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.16 8.56 -34.44 -0.29 -14.45 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.40 2.26 -91.70 -0.21 1.19 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.65 5.03 -26.61 -0.13 -2.79 16 12 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 13 C 0.06 1.08 5.13 -3.83 -0.02 1.06 16 14 N -0.53 -9.81 4.53 -226.69 -1.03 -10.83 16 15 C 0.09 1.30 1.95 -67.71 -0.13 1.17 16 16 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 17 C -0.11 -1.57 4.98 -26.73 -0.13 -1.70 16 18 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 19 C -0.11 -1.09 5.01 -26.73 -0.13 -1.23 16 20 C -0.05 -0.51 2.37 -91.75 -0.22 -0.73 16 21 H 0.07 0.79 7.88 -51.93 -0.41 0.39 16 22 C -0.07 -0.72 4.78 -104.62 -0.50 -1.22 16 23 C -0.11 -1.16 8.71 -39.58 -0.34 -1.51 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 25 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.19 9.67 -39.58 -0.38 -1.57 16 28 C -0.10 -1.31 3.95 -26.71 -0.11 -1.42 16 29 C 0.07 1.41 4.44 -3.84 -0.02 1.39 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.98 5.90 -51.93 -0.31 0.67 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.02 6.28 -51.93 -0.33 0.69 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.67 7.37 -51.93 -0.38 0.28 16 43 H 0.12 1.21 7.10 -52.49 -0.37 0.84 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 1.02 7.95 -52.49 -0.42 0.61 16 48 H 0.07 0.97 7.40 -51.93 -0.38 0.59 16 49 H 0.06 0.85 6.22 -51.93 -0.32 0.53 16 50 H 0.06 1.32 6.01 -51.93 -0.31 1.01 16 51 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -28.51 379.11 -12.95 -41.46 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -9.01 Total: 0.88 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -4.23 Total: -28.68 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.40 Total: -35.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.51 -12.95 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172551070.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.106 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds