Wall clock time and date at job start Tue Mar 31 2020 10:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99539 * 2 1 4 4 H 1.48505 * 109.46950 * 269.99478 * 3 2 1 5 5 H 1.48492 * 109.47461 * 29.99261 * 3 2 1 6 6 H 1.48504 * 109.47315 * 149.99850 * 3 2 1 7 7 C 1.37873 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00322 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99836 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.53699 * 300.10263 * 9 7 2 11 11 C 1.53117 * 109.50517 * 60.19696 * 9 7 2 12 12 C 1.53116 * 109.16598 * 177.59438 * 11 9 7 13 13 C 1.53032 * 109.27795 * 302.34925 * 12 11 9 14 14 N 1.46854 * 109.52469 * 59.17484 * 13 12 11 15 15 C 1.46897 * 110.99602 * 174.16011 * 14 13 12 16 16 H 1.08996 * 109.47600 * 64.21500 * 15 14 13 17 17 C 1.53002 * 109.46883 * 184.20946 * 15 14 13 18 18 C 1.52997 * 109.47415 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47164 * 300.00027 * 18 17 15 20 20 C 1.52999 * 109.46626 * 59.99702 * 19 18 17 21 21 H 1.09000 * 109.47160 * 60.00369 * 20 19 18 22 22 C 1.50706 * 109.46957 * 180.02562 * 20 19 18 23 23 C 1.38232 * 119.99876 * 59.72409 * 22 20 19 24 24 C 1.38242 * 119.99995 * 179.81102 * 23 22 20 25 25 C 1.38236 * 119.99675 * 0.42033 * 24 23 22 26 26 C 1.38239 * 120.00135 * 359.81774 * 25 24 23 27 27 C 1.38235 * 119.99905 * 359.97438 * 26 25 24 28 28 C 1.52996 * 109.47593 * 304.20904 * 15 14 13 29 29 C 1.46847 * 111.19559 * 298.26040 * 14 13 12 30 30 H 0.96997 * 120.00369 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.52439 * 297.50830 * 11 9 7 32 32 H 1.09007 * 109.52348 * 57.62609 * 11 9 7 33 33 H 1.09008 * 109.50149 * 62.28728 * 12 11 9 34 34 H 1.09001 * 109.50483 * 182.40573 * 12 11 9 35 35 H 1.09003 * 109.46272 * 299.16042 * 13 12 11 36 36 H 1.09004 * 109.46504 * 179.19552 * 13 12 11 37 37 H 1.09000 * 109.46986 * 60.00080 * 17 15 14 38 38 H 1.09001 * 109.47601 * 300.00803 * 17 15 14 39 39 H 1.09001 * 109.46922 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47140 * 59.99976 * 18 17 15 41 41 H 1.08993 * 109.46955 * 180.02562 * 19 18 17 42 42 H 1.09000 * 109.47050 * 300.00004 * 19 18 17 43 43 H 1.07999 * 120.00050 * 0.02562 * 23 22 20 44 44 H 1.07997 * 120.00143 * 180.21159 * 24 23 22 45 45 H 1.08002 * 120.00039 * 179.78326 * 25 24 23 46 46 H 1.07997 * 119.99672 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.99724 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47054 * 300.00396 * 28 15 14 49 49 H 1.09001 * 109.46997 * 60.00129 * 28 15 14 50 50 H 1.09005 * 109.45808 * 181.75631 * 29 14 13 51 51 H 1.09001 * 109.46015 * 301.71931 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6998 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6224 -2.5570 0.8891 11 6 0.3748 -2.5835 -1.2522 12 6 -0.3407 -3.9370 -1.2748 13 6 0.6993 -5.0590 -1.2372 14 7 1.5115 -4.9347 -0.0200 15 6 2.4285 -6.0738 0.1194 16 1 3.1426 -6.0684 -0.7040 17 6 3.1807 -5.9634 1.4472 18 6 4.1363 -7.1494 1.5923 19 6 3.3375 -8.4542 1.5656 20 6 2.5855 -8.5645 0.2378 21 1 3.2995 -8.5586 -0.5858 22 6 1.7982 -9.8493 0.2116 23 6 0.8305 -10.0865 1.1697 24 6 0.1056 -11.2634 1.1434 25 6 0.3547 -12.2067 0.1642 26 6 1.3259 -11.9716 -0.7911 27 6 2.0477 -10.7929 -0.7673 28 6 1.6294 -7.3782 0.0929 29 6 2.2451 -3.6628 0.0012 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3631 -1.7815 -1.2352 32 1 0.9988 -2.4854 -2.1406 33 1 -0.9945 -4.0176 -0.4063 34 1 -0.9331 -4.0203 -2.1860 35 1 1.3441 -4.9861 -2.1130 36 1 0.1927 -6.0241 -1.2388 37 1 2.4666 -5.9688 2.2708 38 1 3.7500 -5.0341 1.4663 39 1 4.6717 -7.0709 2.5385 40 1 4.8503 -7.1435 0.7688 41 1 4.0183 -9.2990 1.6694 42 1 2.6235 -8.4600 2.3891 43 1 0.6382 -9.3510 1.9368 44 1 -0.6528 -11.4472 1.8899 45 1 -0.2092 -13.1277 0.1456 46 1 1.5207 -12.7089 -1.5559 47 1 2.8068 -10.6095 -1.5133 48 1 0.9154 -7.3836 0.9165 49 1 1.0936 -7.4569 -0.8530 50 1 2.8611 -3.6138 0.8992 51 1 2.8826 -3.5965 -0.8804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172551070.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:35 Heat of formation + Delta-G solvation = -13.628626 kcal Electronic energy + Delta-G solvation = -26569.099915 eV Core-core repulsion = 23237.878359 eV Total energy + Delta-G solvation = -3331.221556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.08254 -39.89698 -38.14145 -35.41605 -33.89530 -32.93673 -31.79528 -31.70388 -30.09210 -29.25376 -26.94629 -24.94194 -24.43406 -23.55188 -23.06982 -22.17835 -21.35583 -20.48630 -20.25441 -18.46746 -17.73793 -17.08604 -16.52276 -16.11622 -15.84777 -15.68508 -15.51730 -15.24472 -14.93037 -14.64719 -14.44462 -14.28243 -14.18279 -14.05844 -13.82158 -13.78269 -13.46280 -13.03648 -12.86711 -12.81211 -12.61017 -12.45825 -12.29740 -12.18460 -12.10460 -11.78740 -11.75297 -11.71078 -11.45223 -11.33149 -11.15810 -10.95386 -10.76665 -10.55982 -10.34563 -9.74836 -9.51192 -9.09040 -8.07881 -6.22087 0.52345 0.57090 1.40422 1.40886 1.51297 2.42353 2.91287 3.08011 3.18858 3.62965 3.78023 3.98340 4.10757 4.15758 4.21733 4.27086 4.29850 4.31050 4.35762 4.42065 4.48053 4.53557 4.58544 4.61374 4.63000 4.70424 4.72362 4.76299 4.81394 4.89380 4.95866 5.06332 5.09178 5.12956 5.16266 5.24204 5.25330 5.27442 5.29686 5.34915 5.36010 5.43272 5.51684 5.56197 5.63527 5.66132 5.69828 5.84286 5.98159 6.14135 6.19758 6.22942 6.44229 6.48050 6.90828 7.45693 8.96811 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.002840 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.892963 B = 9858.033791 C =10486.847088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.054 3.946 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.065 3.935 14 N -0.542 5.542 15 C 0.088 3.912 16 H 0.029 0.971 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.103 4.103 20 C -0.039 4.039 21 H 0.079 0.921 22 C -0.080 4.080 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.127 4.127 27 C -0.130 4.130 28 C -0.092 4.092 29 C 0.082 3.918 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.021 0.979 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -24.515 0.178 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.068 0.932 9 C 0.035 3.965 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.063 4.063 14 N -0.267 5.267 15 C -0.020 4.020 16 H 0.047 0.953 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.140 4.140 20 C -0.058 4.058 21 H 0.097 0.903 22 C -0.080 4.080 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.152 4.152 26 C -0.144 4.144 27 C -0.148 4.148 28 C -0.130 4.130 29 C -0.045 4.045 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.152 0.848 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.148 0.852 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 3.560 -24.395 0.582 24.661 hybrid contribution 0.682 1.530 -0.718 1.823 sum 4.242 -22.865 -0.136 23.256 Atomic orbital electron populations 1.70038 1.07173 1.27044 1.51259 1.25722 0.95663 1.02314 0.94808 0.85629 0.78782 0.79482 0.78199 1.20181 1.20829 1.19266 1.21519 0.92920 0.92233 1.50736 0.93172 1.18567 0.92962 0.91342 0.93586 0.98590 1.21462 0.99084 0.96256 0.97398 1.21582 0.97546 0.94908 1.00757 1.22068 0.95162 0.99094 0.89980 1.61984 1.24774 1.01904 1.37998 1.21637 0.92915 0.90392 0.97068 0.95320 1.21607 0.98180 0.98530 0.96677 1.21485 0.97337 0.93458 1.02479 1.21553 0.98844 0.97335 0.96292 1.20114 0.95904 0.90608 0.99202 0.90263 1.19932 0.96847 0.95706 0.95540 1.21180 0.96341 0.97819 0.99046 1.21414 0.99843 0.94052 0.99333 1.21437 0.98519 1.00030 0.95235 1.21420 0.96200 0.97489 0.99326 1.21305 1.00605 0.94213 0.98672 1.21604 0.97544 0.91775 1.02090 1.21992 0.95317 0.88921 0.98294 0.93077 0.92442 0.96147 0.93122 0.91432 0.96124 0.89288 0.92001 0.93103 0.90664 0.91732 0.90928 0.91773 0.86066 0.84794 0.84385 0.84360 0.85228 0.91596 0.92111 0.92005 0.97411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.18 11.36 21.45 0.24 -53.94 16 2 C 0.01 0.77 5.30 84.65 0.45 1.22 16 3 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.54 -30.40 8.56 25.60 0.22 -30.18 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.05 2.84 2.26 -11.49 -0.03 2.81 16 10 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 11 C -0.10 -5.14 5.03 30.67 0.15 -4.99 16 12 C -0.11 -4.39 6.09 30.64 0.19 -4.20 16 13 C 0.06 2.25 5.13 86.32 0.44 2.70 16 14 N -0.54 -19.92 4.53 -871.12 -3.94 -23.86 16 15 C 0.09 2.55 1.95 44.92 0.09 2.64 16 16 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 17 C -0.11 -3.03 4.98 30.59 0.15 -2.88 16 18 C -0.11 -2.21 5.92 30.60 0.18 -2.03 16 19 C -0.10 -1.88 5.01 30.60 0.15 -1.73 16 20 C -0.04 -0.77 2.37 -11.52 -0.03 -0.80 16 21 H 0.08 1.50 7.88 -2.39 -0.02 1.48 16 22 C -0.08 -1.55 4.78 -19.86 -0.09 -1.65 16 23 C -0.13 -2.42 8.71 22.27 0.19 -2.23 16 24 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 26 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 27 C -0.13 -2.29 9.67 22.27 0.22 -2.07 16 28 C -0.09 -2.24 3.95 30.61 0.12 -2.12 16 29 C 0.08 3.59 4.44 86.32 0.38 3.97 16 30 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.06 3.20 6.17 -2.39 -0.01 3.19 16 32 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.09 2.66 5.90 -2.38 -0.01 2.64 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.54 6.28 -2.39 -0.01 1.52 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.20 7.37 -2.39 -0.02 1.19 16 43 H 0.12 2.28 7.10 -2.91 -0.02 2.26 16 44 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 45 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 46 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.13 1.91 7.95 -2.91 -0.02 1.89 16 48 H 0.07 1.70 7.40 -2.39 -0.02 1.68 16 49 H 0.06 1.51 6.22 -2.39 -0.01 1.49 16 50 H 0.06 2.67 6.01 -2.38 -0.01 2.66 16 51 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -62.70 379.11 2.66 -60.03 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.87 Total: 18.40 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 3.46 Total: -47.09 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -3.70 Total: -77.80 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -62.70 2.66 -60.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172551070.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.405 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds