Wall clock time and date at job start Tue Mar 31 2020 10:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48493 * 109.47284 * 269.99996 * 3 2 1 5 5 H 1.48496 * 109.46946 * 30.00172 * 3 2 1 6 6 H 1.48508 * 109.46988 * 150.00089 * 3 2 1 7 7 C 1.37884 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99611 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99503 * 0.02562 * 7 2 1 10 10 N 1.46909 * 109.46788 * 175.51856 * 9 7 2 11 11 C 1.46901 * 110.99553 * 74.71548 * 10 9 7 12 12 C 1.54893 * 110.59649 * 87.11494 * 11 10 9 13 13 C 1.54889 * 102.74895 * 156.67482 * 12 11 10 14 14 C 1.54266 * 104.19319 * 322.05405 * 13 12 11 15 15 C 1.53874 * 106.60243 * 23.61386 * 14 13 12 16 16 C 1.46895 * 110.99826 * 198.66935 * 10 9 7 17 17 H 1.08991 * 110.43614 * 291.59275 * 16 10 9 18 18 C 1.54894 * 110.48344 * 169.05272 * 16 10 9 19 19 C 1.54893 * 102.74974 * 203.38084 * 18 16 10 20 20 C 1.54270 * 104.19374 * 37.94092 * 19 18 16 21 21 H 1.08999 * 110.02686 * 95.67536 * 20 19 18 22 22 C 1.50694 * 110.03010 * 217.05558 * 20 19 18 23 23 C 1.38241 * 119.99981 * 58.28019 * 22 20 19 24 24 C 1.38230 * 119.99981 * 179.78754 * 23 22 20 25 25 C 1.38239 * 120.00205 * 0.45989 * 24 23 22 26 26 C 1.38236 * 119.99616 * 359.76732 * 25 24 23 27 27 C 1.38234 * 120.00117 * 238.54877 * 22 20 19 28 28 C 1.54085 * 106.62255 * 336.28266 * 20 19 18 29 29 H 0.97001 * 119.99865 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47390 * 55.52363 * 9 7 2 31 31 H 1.08992 * 109.47438 * 295.51751 * 9 7 2 32 32 H 1.09001 * 110.43692 * 324.49218 * 11 10 9 33 33 H 1.09002 * 110.75482 * 274.98703 * 12 11 10 34 34 H 1.08999 * 110.75871 * 38.35898 * 12 11 10 35 35 H 1.08996 * 110.48384 * 203.38090 * 13 12 11 36 36 H 1.09000 * 110.59944 * 80.78498 * 13 12 11 37 37 H 1.08996 * 110.03340 * 264.32247 * 14 13 12 38 38 H 1.09007 * 110.07299 * 142.91901 * 14 13 12 39 39 H 1.09000 * 110.03237 * 240.71641 * 15 14 13 40 40 H 1.08997 * 110.03707 * 119.28486 * 15 14 13 41 41 H 1.09001 * 110.75425 * 321.69684 * 18 16 10 42 42 H 1.09001 * 110.75673 * 85.06655 * 18 16 10 43 43 H 1.08998 * 110.48757 * 156.62370 * 19 18 16 44 44 H 1.09000 * 110.48193 * 279.26590 * 19 18 16 45 45 H 1.07995 * 119.99678 * 359.97438 * 23 22 20 46 46 H 1.07998 * 120.00125 * 180.24710 * 24 23 22 47 47 H 1.07997 * 120.00022 * 179.79257 * 25 24 23 48 48 H 1.08004 * 120.00046 * 180.02562 * 26 25 24 49 49 H 1.07998 * 119.99837 * 359.97438 * 27 22 20 50 50 H 1.09002 * 110.15533 * 240.87816 * 28 20 19 51 51 H 1.08994 * 110.00786 * 119.38356 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2021 -3.6136 -0.1071 11 6 2.9063 -3.8292 1.1640 12 6 2.0956 -4.7772 2.0821 13 6 3.1828 -5.3558 3.0214 14 6 4.4097 -5.5483 2.1064 15 6 4.2340 -4.5777 0.9254 16 6 1.5270 -4.8409 -0.5497 17 1 0.8549 -5.2065 0.2265 18 6 2.5664 -5.9270 -0.9225 19 6 1.7743 -6.8400 -1.8912 20 6 0.9125 -5.8605 -2.7145 21 1 1.4129 -5.6210 -3.6528 22 6 -0.4384 -6.4684 -2.9909 23 6 -1.2490 -6.8576 -1.9409 24 6 -2.4900 -7.4112 -2.1943 25 6 -2.9166 -7.5844 -3.4978 26 6 -2.1040 -7.1995 -4.5478 27 6 -0.8647 -6.6420 -4.2943 28 6 0.7524 -4.5886 -1.8597 29 1 -0.4850 0.8401 -0.0004 30 1 0.5660 -2.5231 -0.8468 31 1 0.6857 -2.5922 0.9277 32 1 3.0892 -2.8780 1.6639 33 1 1.3505 -4.2206 2.6506 34 1 1.6259 -5.5703 1.5003 35 1 2.8609 -6.3120 3.4340 36 1 3.4110 -4.6529 3.8226 37 1 4.4472 -6.5754 1.7432 38 1 5.3237 -5.3117 2.6513 39 1 4.1862 -5.1337 -0.0109 40 1 5.0622 -3.8695 0.8976 41 1 3.4254 -5.4831 -1.4257 42 1 2.8796 -6.4818 -0.0381 43 1 2.4557 -7.3882 -2.5417 44 1 1.1406 -7.5293 -1.3332 45 1 -0.9140 -6.7264 -0.9227 46 1 -3.1250 -7.7116 -1.3740 47 1 -3.8848 -8.0200 -3.6958 48 1 -2.4373 -7.3344 -5.5662 49 1 -0.2297 -6.3415 -5.1146 50 1 -0.3011 -4.4121 -1.6425 51 1 1.1747 -3.7313 -2.3839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172561014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:16 Heat of formation + Delta-G solvation = 19.375899 kcal Electronic energy + Delta-G solvation = -27133.697458 eV Core-core repulsion = 23803.907086 eV Total energy + Delta-G solvation = -3329.790372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99291 -38.85453 -36.56641 -34.26465 -32.37267 -31.11498 -30.77922 -28.66518 -28.10653 -27.53088 -26.81663 -24.85528 -22.72769 -22.24244 -21.57261 -20.76275 -19.62511 -19.44566 -18.27847 -16.88691 -16.22156 -15.81782 -15.54212 -15.10076 -14.96921 -14.55512 -14.17416 -14.04406 -13.47074 -13.34716 -13.27224 -13.04194 -12.79231 -12.70091 -12.31346 -11.84954 -11.65637 -11.50629 -11.37966 -11.07501 -11.02268 -10.90565 -10.86212 -10.71395 -10.60720 -10.47836 -10.34807 -10.32744 -10.29736 -10.16837 -9.85591 -9.56611 -9.48401 -9.13899 -8.84123 -8.52140 -8.36173 -7.10479 -5.97418 -3.97842 1.44832 1.47392 3.34497 3.40569 3.44149 3.85551 4.45546 4.74765 4.83290 4.85224 5.04238 5.05086 5.08726 5.10578 5.15331 5.19191 5.33758 5.37971 5.54179 5.58660 5.63589 5.73845 5.80220 5.87151 5.90652 5.94163 5.98369 6.00867 6.04552 6.07467 6.08647 6.17722 6.18991 6.22444 6.26830 6.37995 6.41569 6.49164 6.50230 6.56771 6.61141 6.63553 6.71084 6.78024 6.83049 6.84206 7.00911 7.09099 7.37309 7.43799 7.89368 8.20480 8.33095 8.64233 9.10311 9.65870 11.12936 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004541 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.949733 B = 6164.664137 C = 8001.856279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.189 3.811 10 N -0.520 5.520 11 C 0.093 3.907 12 C -0.164 4.164 13 C -0.119 4.119 14 C -0.122 4.122 15 C -0.134 4.134 16 C 0.078 3.922 17 H 0.043 0.957 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.055 4.055 21 H 0.077 0.923 22 C -0.062 4.062 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.133 4.133 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.106 4.106 29 H 0.260 0.740 30 H 0.038 0.962 31 H -0.013 1.013 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.062 0.938 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -16.840 -3.063 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.064 3.936 10 N -0.243 5.243 11 C -0.017 4.017 12 C -0.203 4.203 13 C -0.158 4.158 14 C -0.160 4.160 15 C -0.172 4.172 16 C -0.031 4.031 17 H 0.061 0.939 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.073 4.073 21 H 0.096 0.904 22 C -0.062 4.062 23 C -0.131 4.131 24 C -0.138 4.138 25 C -0.151 4.151 26 C -0.139 4.139 27 C -0.139 4.139 28 C -0.144 4.144 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.005 0.995 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.080 0.920 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.792 -16.556 -3.432 16.927 hybrid contribution -0.369 0.864 0.659 1.148 sum 0.424 -15.692 -2.773 15.940 Atomic orbital electron populations 1.69959 1.05994 1.26581 1.51429 1.24965 0.94799 0.99130 0.95690 0.86561 0.79747 0.83411 0.78057 1.20731 1.21448 1.19929 1.21181 0.93468 0.89988 1.49347 0.92053 1.19783 0.90438 0.87349 0.95996 1.62358 1.30325 1.03999 1.27575 1.22426 0.92473 0.97664 0.89129 1.23277 0.98285 1.00259 0.98478 1.22240 0.95784 0.99926 0.97805 1.22112 0.97687 0.99196 0.97001 1.22603 0.97824 0.97978 0.98762 1.22497 0.93987 0.91337 0.95283 0.93928 1.22811 0.98358 0.95899 0.98301 1.22491 0.97974 0.97206 0.97718 1.20878 0.91494 0.95372 0.99603 0.90444 1.20018 0.96185 0.96989 0.92975 1.21038 0.94150 0.98696 0.99167 1.21127 0.96293 0.99647 0.96707 1.21073 0.99681 1.01334 0.92969 1.21093 0.94628 0.99384 0.98826 1.21094 0.96505 1.00038 0.96305 1.22340 1.00179 0.96457 0.95441 0.93069 0.94443 0.99527 0.89387 0.92141 0.90688 0.92712 0.92096 0.92649 0.92652 0.89698 0.92525 0.90180 0.91735 0.91979 0.91785 0.86075 0.86383 0.86566 0.86467 0.86271 0.91970 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.50 -13.92 8.49 -34.44 -0.29 -14.22 16 8 H 0.06 1.71 7.80 -52.48 -0.41 1.30 16 9 C 0.19 4.79 4.46 -4.97 -0.02 4.77 16 10 N -0.52 -10.62 4.26 -216.20 -0.92 -11.54 16 11 C 0.09 1.72 2.67 -66.05 -0.18 1.54 16 12 C -0.16 -2.68 5.58 -24.74 -0.14 -2.82 16 13 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 14 C -0.12 -1.59 6.55 -25.61 -0.17 -1.76 16 15 C -0.13 -2.08 5.72 -25.61 -0.15 -2.22 16 16 C 0.08 1.33 1.92 -66.05 -0.13 1.20 16 17 H 0.04 0.75 5.70 -51.93 -0.30 0.45 16 18 C -0.12 -1.62 4.15 -24.73 -0.10 -1.73 16 19 C -0.12 -1.44 6.27 -25.07 -0.16 -1.60 16 20 C -0.05 -0.75 3.14 -90.54 -0.28 -1.03 16 21 H 0.08 1.02 7.91 -51.93 -0.41 0.61 16 22 C -0.06 -0.83 4.69 -104.62 -0.49 -1.32 16 23 C -0.11 -1.48 8.09 -39.58 -0.32 -1.81 16 24 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 25 C -0.13 -1.49 10.05 -39.58 -0.40 -1.88 16 26 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 27 C -0.12 -1.50 9.68 -39.58 -0.38 -1.89 16 28 C -0.11 -1.82 4.38 -25.50 -0.11 -1.93 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.04 1.01 6.07 -51.93 -0.32 0.70 16 31 H -0.01 -0.36 7.91 -51.93 -0.41 -0.77 16 32 H 0.09 1.89 7.27 -51.93 -0.38 1.52 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.18 4.64 -51.93 -0.24 0.94 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.65 8.06 -51.93 -0.42 0.24 16 38 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.08 1.27 3.90 -51.93 -0.20 1.07 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.18 6.84 -51.93 -0.36 0.83 16 42 H 0.06 0.85 6.32 -51.93 -0.33 0.53 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.77 6.93 -51.93 -0.36 0.41 16 45 H 0.12 1.58 7.80 -52.49 -0.41 1.17 16 46 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 47 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 48 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 49 H 0.12 1.29 7.96 -52.49 -0.42 0.87 16 50 H 0.06 1.14 7.21 -51.93 -0.37 0.76 16 51 H 0.08 1.62 7.48 -51.93 -0.39 1.23 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -29.15 377.77 -12.55 -41.70 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.66 Total: 4.00 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -4.38 Total: -30.62 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.18 Total: -37.51 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.15 -12.55 -41.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172561014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.074 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds