Wall clock time and date at job start Tue Mar 31 2020 10:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48493 * 109.47284 * 269.99996 * 3 2 1 5 5 H 1.48496 * 109.46946 * 30.00172 * 3 2 1 6 6 H 1.48508 * 109.46988 * 150.00089 * 3 2 1 7 7 C 1.37884 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99611 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99503 * 0.02562 * 7 2 1 10 10 N 1.46909 * 109.46788 * 175.51856 * 9 7 2 11 11 C 1.46901 * 110.99553 * 74.71548 * 10 9 7 12 12 C 1.54893 * 110.59649 * 87.11494 * 11 10 9 13 13 C 1.54889 * 102.74895 * 156.67482 * 12 11 10 14 14 C 1.54266 * 104.19319 * 322.05405 * 13 12 11 15 15 C 1.53874 * 106.60243 * 23.61386 * 14 13 12 16 16 C 1.46895 * 110.99826 * 198.66935 * 10 9 7 17 17 H 1.08991 * 110.43614 * 291.59275 * 16 10 9 18 18 C 1.54894 * 110.48344 * 169.05272 * 16 10 9 19 19 C 1.54893 * 102.74974 * 203.38084 * 18 16 10 20 20 C 1.54270 * 104.19374 * 37.94092 * 19 18 16 21 21 H 1.08999 * 110.02686 * 95.67536 * 20 19 18 22 22 C 1.50694 * 110.03010 * 217.05558 * 20 19 18 23 23 C 1.38241 * 119.99981 * 58.28019 * 22 20 19 24 24 C 1.38230 * 119.99981 * 179.78754 * 23 22 20 25 25 C 1.38239 * 120.00205 * 0.45989 * 24 23 22 26 26 C 1.38236 * 119.99616 * 359.76732 * 25 24 23 27 27 C 1.38234 * 120.00117 * 238.54877 * 22 20 19 28 28 C 1.54085 * 106.62255 * 336.28266 * 20 19 18 29 29 H 0.97001 * 119.99865 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47390 * 55.52363 * 9 7 2 31 31 H 1.08992 * 109.47438 * 295.51751 * 9 7 2 32 32 H 1.09001 * 110.43692 * 324.49218 * 11 10 9 33 33 H 1.09002 * 110.75482 * 274.98703 * 12 11 10 34 34 H 1.08999 * 110.75871 * 38.35898 * 12 11 10 35 35 H 1.08996 * 110.48384 * 203.38090 * 13 12 11 36 36 H 1.09000 * 110.59944 * 80.78498 * 13 12 11 37 37 H 1.08996 * 110.03340 * 264.32247 * 14 13 12 38 38 H 1.09007 * 110.07299 * 142.91901 * 14 13 12 39 39 H 1.09000 * 110.03237 * 240.71641 * 15 14 13 40 40 H 1.08997 * 110.03707 * 119.28486 * 15 14 13 41 41 H 1.09001 * 110.75425 * 321.69684 * 18 16 10 42 42 H 1.09001 * 110.75673 * 85.06655 * 18 16 10 43 43 H 1.08998 * 110.48757 * 156.62370 * 19 18 16 44 44 H 1.09000 * 110.48193 * 279.26590 * 19 18 16 45 45 H 1.07995 * 119.99678 * 359.97438 * 23 22 20 46 46 H 1.07998 * 120.00125 * 180.24710 * 24 23 22 47 47 H 1.07997 * 120.00022 * 179.79257 * 25 24 23 48 48 H 1.08004 * 120.00046 * 180.02562 * 26 25 24 49 49 H 1.07998 * 119.99837 * 359.97438 * 27 22 20 50 50 H 1.09002 * 110.15533 * 240.87816 * 28 20 19 51 51 H 1.08994 * 110.00786 * 119.38356 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2021 -3.6136 -0.1071 11 6 2.9063 -3.8292 1.1640 12 6 2.0956 -4.7772 2.0821 13 6 3.1828 -5.3558 3.0214 14 6 4.4097 -5.5483 2.1064 15 6 4.2340 -4.5777 0.9254 16 6 1.5270 -4.8409 -0.5497 17 1 0.8549 -5.2065 0.2265 18 6 2.5664 -5.9270 -0.9225 19 6 1.7743 -6.8400 -1.8912 20 6 0.9125 -5.8605 -2.7145 21 1 1.4129 -5.6210 -3.6528 22 6 -0.4384 -6.4684 -2.9909 23 6 -1.2490 -6.8576 -1.9409 24 6 -2.4900 -7.4112 -2.1943 25 6 -2.9166 -7.5844 -3.4978 26 6 -2.1040 -7.1995 -4.5478 27 6 -0.8647 -6.6420 -4.2943 28 6 0.7524 -4.5886 -1.8597 29 1 -0.4850 0.8401 -0.0004 30 1 0.5660 -2.5231 -0.8468 31 1 0.6857 -2.5922 0.9277 32 1 3.0892 -2.8780 1.6639 33 1 1.3505 -4.2206 2.6506 34 1 1.6259 -5.5703 1.5003 35 1 2.8609 -6.3120 3.4340 36 1 3.4110 -4.6529 3.8226 37 1 4.4472 -6.5754 1.7432 38 1 5.3237 -5.3117 2.6513 39 1 4.1862 -5.1337 -0.0109 40 1 5.0622 -3.8695 0.8976 41 1 3.4254 -5.4831 -1.4257 42 1 2.8796 -6.4818 -0.0381 43 1 2.4557 -7.3882 -2.5417 44 1 1.1406 -7.5293 -1.3332 45 1 -0.9140 -6.7264 -0.9227 46 1 -3.1250 -7.7116 -1.3740 47 1 -3.8848 -8.0200 -3.6958 48 1 -2.4373 -7.3344 -5.5662 49 1 -0.2297 -6.3415 -5.1146 50 1 -0.3011 -4.4121 -1.6425 51 1 1.1747 -3.7313 -2.3839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172561014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:15 Heat of formation + Delta-G solvation = 5.948940 kcal Electronic energy + Delta-G solvation = -27134.279695 eV Core-core repulsion = 23803.907086 eV Total energy + Delta-G solvation = -3330.372609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23666 -40.00186 -37.73177 -35.92528 -34.29567 -32.26836 -31.71403 -29.95427 -29.49839 -29.18241 -28.03770 -26.53697 -23.98530 -23.49680 -22.95390 -22.01141 -20.76315 -20.67486 -19.74746 -18.34919 -17.89584 -17.09987 -17.01781 -16.46647 -16.15169 -16.02636 -15.40699 -15.27146 -14.81977 -14.54569 -14.50040 -14.23288 -14.17483 -13.93323 -13.78320 -13.48518 -13.19096 -12.85031 -12.78170 -12.61935 -12.48068 -12.22105 -12.14886 -12.03345 -12.00082 -11.91057 -11.81749 -11.63041 -11.45566 -11.41172 -11.31418 -11.17906 -11.07867 -10.83043 -10.55771 -9.77016 -9.49601 -8.82157 -8.18092 -6.27700 0.50583 0.54433 1.37949 1.39419 1.50324 2.39520 2.90808 3.12337 3.29889 3.69412 3.74354 3.81709 3.89218 3.93170 4.10601 4.12083 4.19737 4.31436 4.39880 4.49802 4.55257 4.60138 4.63497 4.66867 4.67854 4.72740 4.74566 4.78746 4.86317 4.88583 4.94519 5.03169 5.07294 5.11969 5.13632 5.19841 5.21351 5.24573 5.25661 5.31965 5.33223 5.38289 5.47840 5.49642 5.57505 5.62053 5.64397 5.66125 5.71081 5.82491 6.14021 6.17951 6.52855 6.79415 6.89768 7.41498 8.91740 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004541 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.949733 B = 6164.664137 C = 8001.856279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.209 3.791 10 N -0.525 5.525 11 C 0.084 3.916 12 C -0.160 4.160 13 C -0.113 4.113 14 C -0.113 4.113 15 C -0.128 4.128 16 C 0.075 3.925 17 H 0.037 0.963 18 C -0.104 4.104 19 C -0.105 4.105 20 C -0.046 4.046 21 H 0.084 0.916 22 C -0.078 4.078 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.135 4.135 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.101 4.101 29 H 0.262 0.738 30 H 0.012 0.988 31 H -0.049 1.049 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.114 0.886 46 H 0.134 0.866 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.132 0.868 50 H 0.037 0.963 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 -19.145 -3.653 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.083 3.917 10 N -0.247 5.247 11 C -0.025 4.025 12 C -0.199 4.199 13 C -0.151 4.151 14 C -0.151 4.151 15 C -0.165 4.165 16 C -0.033 4.033 17 H 0.055 0.945 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.065 4.065 21 H 0.102 0.898 22 C -0.079 4.079 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.152 4.152 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.139 4.139 29 H 0.071 0.929 30 H 0.030 0.970 31 H -0.032 1.032 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.132 0.868 46 H 0.152 0.848 47 H 0.160 0.840 48 H 0.161 0.839 49 H 0.150 0.850 50 H 0.056 0.944 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.082 -18.884 -4.018 19.418 hybrid contribution -0.864 1.597 0.834 1.998 sum 1.218 -17.287 -3.184 17.620 Atomic orbital electron populations 1.70093 1.07650 1.27619 1.52299 1.25861 0.95667 1.02957 0.95106 0.85463 0.78569 0.78663 0.78418 1.19856 1.20817 1.19036 1.21478 0.93368 0.91376 1.49201 0.92516 1.19352 0.90420 0.89010 0.92912 1.62327 1.29142 1.04327 1.28933 1.22456 0.94670 0.96898 0.88481 1.23205 0.98438 0.99675 0.98578 1.22229 0.94860 1.00823 0.97203 1.22083 0.97790 0.99628 0.95595 1.22553 0.95114 0.98171 1.00681 1.22614 0.95049 0.90825 0.94823 0.94523 1.22720 0.97231 0.94821 0.99372 1.22450 0.97858 0.96587 0.97391 1.20774 0.92585 0.93829 0.99270 0.89794 1.20030 0.96111 0.97976 0.93733 1.21117 0.95100 0.99667 0.98895 1.21402 0.96008 0.99374 0.97919 1.21440 1.00677 1.00601 0.92517 1.21445 0.94079 0.98447 1.00257 1.21337 0.97374 1.00179 0.96166 1.22215 0.98333 0.97381 0.95980 0.92893 0.97012 1.03154 0.93422 0.94838 0.89794 0.90182 0.92387 0.90152 0.91119 0.88771 0.93175 0.90488 0.90033 0.89510 0.91044 0.86812 0.84778 0.83999 0.83946 0.85045 0.94403 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.52 -30.21 8.49 25.60 0.22 -30.00 16 8 H 0.06 3.30 7.80 -2.91 -0.02 3.27 16 9 C 0.21 11.44 4.46 85.55 0.38 11.83 16 10 N -0.52 -22.66 4.26 -837.93 -3.57 -26.23 16 11 C 0.08 3.24 2.67 45.99 0.12 3.37 16 12 C -0.16 -5.33 5.58 31.89 0.18 -5.15 16 13 C -0.11 -2.87 6.83 31.67 0.22 -2.66 16 14 C -0.11 -2.61 6.55 31.32 0.21 -2.40 16 15 C -0.13 -3.81 5.72 31.32 0.18 -3.64 16 16 C 0.08 2.66 1.92 45.99 0.09 2.75 16 17 H 0.04 1.35 5.70 -2.39 -0.01 1.34 16 18 C -0.10 -2.76 4.15 31.89 0.13 -2.62 16 19 C -0.11 -2.40 6.27 31.67 0.20 -2.20 16 20 C -0.05 -1.25 3.14 -10.74 -0.03 -1.28 16 21 H 0.08 2.16 7.91 -2.39 -0.02 2.14 16 22 C -0.08 -2.08 4.69 -19.87 -0.09 -2.17 16 23 C -0.13 -3.42 8.09 22.27 0.18 -3.24 16 24 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 25 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 26 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 27 C -0.13 -3.13 9.68 22.27 0.22 -2.91 16 28 C -0.10 -3.67 4.38 31.39 0.14 -3.54 16 29 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.01 0.70 6.07 -2.39 -0.01 0.68 16 31 H -0.05 -2.97 7.91 -2.39 -0.02 -2.99 16 32 H 0.05 2.19 7.27 -2.39 -0.02 2.18 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 2.63 4.64 -2.39 -0.01 2.62 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.09 2.65 3.90 -2.39 -0.01 2.64 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 2.14 6.84 -2.39 -0.02 2.12 16 42 H 0.08 1.91 6.32 -2.39 -0.02 1.90 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.56 6.93 -2.39 -0.02 1.54 16 45 H 0.11 3.05 7.80 -2.91 -0.02 3.03 16 46 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 47 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 48 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 49 H 0.13 2.67 7.96 -2.91 -0.02 2.64 16 50 H 0.04 1.51 7.21 -2.39 -0.02 1.49 16 51 H 0.05 2.11 7.48 -2.39 -0.02 2.09 16 Total: -1.00 -67.45 377.77 3.09 -64.36 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.89 Total: 22.72 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 3.46 Total: -50.91 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -3.28 Total: -83.96 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.45 3.09 -64.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172561014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.311 kcal (2) G-P(sol) polarization free energy of solvation -67.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds