Wall clock time and date at job start Tue Mar 31 2020 10:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00213 * 2 1 4 4 H 1.48500 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47172 * 299.99210 * 3 2 1 6 6 H 1.48501 * 109.47295 * 59.99457 * 3 2 1 7 7 C 1.37876 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47350 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46998 * 300.00022 * 11 10 9 13 13 N 1.46904 * 109.47155 * 180.02562 * 12 11 10 14 14 C 1.46894 * 111.00278 * 153.67446 * 13 12 11 15 15 H 1.08999 * 109.47243 * 34.21284 * 14 13 12 16 16 C 1.50707 * 109.46883 * 274.21469 * 14 13 12 17 17 C 1.38233 * 119.99993 * 319.72943 * 16 14 13 18 18 C 1.38231 * 119.99903 * 179.78763 * 17 16 14 19 19 C 1.38238 * 120.00155 * 0.43950 * 18 17 16 20 20 C 1.38235 * 119.99482 * 359.81323 * 19 18 17 21 21 C 1.38230 * 119.99923 * 139.99798 * 16 14 13 22 22 C 1.53000 * 109.47452 * 154.21694 * 14 13 12 23 23 C 1.53784 * 113.61320 * 282.01627 * 22 14 13 24 24 C 1.53781 * 87.07683 * 220.01833 * 23 22 14 25 25 C 1.53769 * 87.08454 * 25.43286 * 24 23 22 26 26 C 1.52996 * 109.47600 * 59.99657 * 12 11 10 27 27 C 1.53001 * 109.46825 * 299.99927 * 9 7 2 28 28 H 0.97003 * 119.99239 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47287 * 59.99630 * 9 7 2 30 30 H 1.09001 * 109.47401 * 59.99487 * 10 9 7 31 31 H 1.09005 * 109.47187 * 299.99676 * 10 9 7 32 32 H 1.09001 * 109.47091 * 59.99925 * 11 10 9 33 33 H 1.08995 * 109.47364 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47158 * 299.99329 * 12 11 10 35 35 H 1.00903 * 110.99148 * 277.62327 * 13 12 11 36 36 H 1.08006 * 119.99803 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.99995 * 180.27236 * 18 17 16 38 38 H 1.07995 * 119.99823 * 179.83258 * 19 18 17 39 39 H 1.08001 * 119.99467 * 180.02562 * 20 19 18 40 40 H 1.08006 * 120.00315 * 359.97438 * 21 16 14 41 41 H 1.09002 * 112.84633 * 53.32148 * 22 14 13 42 42 H 1.09004 * 113.60937 * 334.56362 * 23 22 14 43 43 H 1.08998 * 113.61305 * 105.46978 * 23 22 14 44 44 H 1.09003 * 113.61255 * 270.87854 * 24 23 22 45 45 H 1.08997 * 113.61278 * 139.98577 * 24 23 22 46 46 H 1.09002 * 113.61963 * 220.02075 * 25 24 23 47 47 H 1.09000 * 113.61687 * 89.11487 * 25 24 23 48 48 H 1.09001 * 109.46697 * 59.99969 * 26 12 11 49 49 H 1.08993 * 109.47375 * 179.97438 * 26 12 11 50 50 H 1.09004 * 109.47469 * 60.00302 * 27 9 7 51 51 H 1.09001 * 109.47469 * 299.99953 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8907 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4800 -4.9871 0.0012 12 6 0.5990 -5.0679 1.2494 13 7 -0.1351 -6.3404 1.2492 14 6 -0.4758 -6.7519 2.6175 15 1 -0.6803 -5.8685 3.2223 16 6 0.6790 -7.5136 3.2152 17 6 1.3857 -8.4161 2.4426 18 6 2.4477 -9.1115 2.9896 19 6 2.7974 -8.9111 4.3120 20 6 2.0875 -8.0124 5.0860 21 6 1.0282 -7.3138 4.5377 22 6 -1.7161 -7.6473 2.5869 23 6 -3.0324 -6.8708 2.4162 24 6 -3.6466 -7.8428 3.4374 25 6 -2.2233 -8.0451 3.9831 26 6 -0.3951 -3.9050 1.2483 27 6 0.3709 -2.5799 1.2495 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 2.8711 -3.6040 0.8922 31 1 2.8724 -3.6049 -0.8878 32 1 0.8544 -5.0450 -0.8895 33 1 2.1883 -5.8156 0.0016 34 1 1.2247 -5.0102 2.1401 35 1 -0.9614 -6.2809 0.6731 36 1 1.1098 -8.5757 1.4106 37 1 3.0025 -9.8134 2.3847 38 1 3.6255 -9.4564 4.7400 39 1 2.3610 -7.8556 6.1190 40 1 0.4736 -6.6116 5.1426 41 1 -1.6128 -8.4901 1.9033 42 1 -2.9808 -5.8410 2.7698 43 1 -3.4633 -6.9559 1.4186 44 1 -4.0727 -8.7388 2.9859 45 1 -4.3217 -7.3627 4.1458 46 1 -2.0008 -9.0782 4.2504 47 1 -1.9505 -7.3364 4.7650 48 1 -1.0208 -3.9628 0.3576 49 1 -1.0230 -3.9628 2.1373 50 1 -0.3375 -1.7514 1.2491 51 1 0.9972 -2.5219 2.1397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:21 Heat of formation + Delta-G solvation = 5.599240 kcal Electronic energy + Delta-G solvation = -26786.834112 eV Core-core repulsion = 23456.446340 eV Total energy + Delta-G solvation = -3330.387773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05176 -39.40304 -39.09916 -36.18556 -34.33043 -32.27653 -31.65280 -31.28702 -30.00210 -27.73504 -26.46902 -25.79045 -24.18413 -23.39765 -23.15568 -22.24152 -21.33184 -20.58175 -20.09528 -18.39506 -17.64604 -17.01542 -16.70326 -16.43995 -16.08301 -15.87995 -15.45759 -14.92804 -14.91365 -14.76618 -14.39615 -14.09902 -14.05217 -13.98932 -13.53069 -13.45056 -13.31955 -12.97450 -12.92224 -12.83638 -12.63390 -12.57779 -12.26603 -12.20022 -11.88058 -11.80957 -11.76306 -11.67368 -11.40006 -11.24328 -11.12407 -11.04516 -10.75075 -10.57503 -10.37358 -9.68572 -9.45959 -9.25056 -8.07384 -6.21309 0.57419 0.64999 1.38117 1.40248 1.51455 2.43025 2.97374 3.16709 3.20019 3.62240 3.81223 3.90729 3.96383 4.00255 4.12808 4.14666 4.23811 4.30509 4.39575 4.42358 4.46953 4.55895 4.65215 4.68567 4.75680 4.80697 4.83162 4.85349 4.88122 4.88702 4.94492 5.03677 5.09951 5.10823 5.13550 5.21967 5.24889 5.29130 5.33062 5.38228 5.40584 5.46798 5.59772 5.63394 5.68367 5.69615 5.74928 5.83601 6.04491 6.20374 6.23146 6.25826 6.42721 6.57240 6.91394 7.46582 8.96117 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003522 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.760781 B = 7949.053648 C = 8994.896626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.047 3.953 10 C -0.101 4.101 11 C -0.089 4.089 12 C 0.110 3.890 13 N -0.670 5.670 14 C 0.139 3.861 15 H 0.038 0.962 16 C -0.074 4.074 17 C -0.099 4.099 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.100 4.100 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.096 4.096 28 H 0.259 0.741 29 H -0.006 1.006 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.346 0.654 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.050 0.950 49 H 0.048 0.952 50 H 0.056 0.944 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 -20.493 8.774 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.066 0.934 9 C 0.028 3.972 10 C -0.139 4.139 11 C -0.127 4.127 12 C 0.000 4.000 13 N -0.299 5.299 14 C 0.029 3.971 15 H 0.056 0.944 16 C -0.074 4.074 17 C -0.117 4.117 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.119 4.119 23 C -0.180 4.180 24 C -0.171 4.171 25 C -0.165 4.165 26 C -0.167 4.167 27 C -0.135 4.135 28 H 0.068 0.932 29 H 0.012 0.988 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -2.679 -20.772 8.733 22.691 hybrid contribution -0.288 2.157 0.120 2.179 sum -2.968 -18.615 8.853 20.825 Atomic orbital electron populations 1.70029 1.07054 1.26831 1.51658 1.25712 0.95667 1.02209 0.94952 0.85633 0.79137 0.80053 0.77617 1.19314 1.20554 1.20648 1.21678 0.92957 0.92560 1.50113 0.93376 1.18613 0.93034 0.92207 0.93300 1.21491 0.97931 0.94865 0.99653 1.21353 0.97987 0.96265 0.97127 1.21307 0.94210 0.86567 0.97902 1.60597 1.28245 1.30355 1.10729 1.20401 0.92140 0.95207 0.89306 0.94383 1.19870 0.96933 0.97053 0.93586 1.21095 0.95251 0.95372 1.00002 1.21438 0.97616 1.00304 0.95863 1.21392 1.00343 0.98877 0.94443 1.21318 0.95896 0.97030 1.00688 1.21175 0.98276 1.00455 0.95163 1.22666 0.91679 0.98498 0.99009 1.22990 0.96263 0.98386 1.00381 1.22777 0.96235 0.99701 0.98421 1.22823 0.96188 1.01599 0.95864 1.22127 0.98118 0.96419 1.00044 1.21332 0.98599 0.96042 0.97528 0.93185 0.98783 0.94080 0.93651 0.92757 0.91495 0.92560 0.83511 0.85593 0.84796 0.84487 0.84786 0.86428 0.88299 0.91266 0.90886 0.89189 0.91165 0.91261 0.90671 0.93094 0.93306 0.92583 0.96119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.63 11.32 21.45 0.24 -53.38 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.53 -30.30 8.56 25.60 0.22 -30.09 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 9 C 0.05 2.39 2.10 -11.54 -0.02 2.37 16 10 C -0.10 -4.31 5.14 30.59 0.16 -4.15 16 11 C -0.09 -3.12 5.53 30.59 0.17 -2.95 16 12 C 0.11 3.62 2.27 44.91 0.10 3.72 16 13 N -0.67 -17.56 5.32 -473.31 -2.52 -20.07 16 14 C 0.14 3.31 1.78 44.17 0.08 3.39 16 15 H 0.04 1.03 6.97 -2.39 -0.02 1.01 16 16 C -0.07 -1.79 4.27 -19.87 -0.08 -1.87 16 17 C -0.10 -2.33 9.32 22.27 0.21 -2.13 16 18 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 19 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 20 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 21 C -0.13 -3.08 9.63 22.27 0.21 -2.86 16 22 C -0.10 -1.92 3.11 -10.27 -0.03 -1.95 16 23 C -0.14 -2.64 7.37 31.12 0.23 -2.41 16 24 C -0.13 -2.09 8.08 31.12 0.25 -1.84 16 25 C -0.13 -2.20 7.20 31.12 0.22 -1.97 16 26 C -0.13 -4.82 5.16 30.61 0.16 -4.66 16 27 C -0.10 -4.63 4.98 30.61 0.15 -4.47 16 28 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 29 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 2.03 7.65 -2.39 -0.02 2.01 16 35 H 0.35 8.63 7.84 -89.69 -0.70 7.92 16 36 H 0.13 2.95 7.73 -2.91 -0.02 2.93 16 37 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.12 2.56 8.04 -2.91 -0.02 2.54 16 41 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 1.46 8.03 -2.38 -0.02 1.44 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 48 H 0.05 1.94 8.13 -2.39 -0.02 1.92 16 49 H 0.05 1.71 7.54 -2.39 -0.02 1.69 16 50 H 0.06 3.07 6.07 -2.38 -0.01 3.06 16 51 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -60.74 393.33 3.06 -57.67 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.17 Total: 27.50 kcal Atomic # 6 Polarization: -61.34 SS G_CDS: 3.14 Total: -58.19 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -2.27 Total: -73.46 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -60.74 3.06 -57.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.270 kcal (2) G-P(sol) polarization free energy of solvation -60.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds