Wall clock time and date at job start Tue Mar 31 2020 10:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38268 * 120.11276 * 2 1 4 4 C 1.37926 * 119.76719 * 179.85851 * 3 2 1 5 5 C 1.38911 * 120.54735 * 359.97438 * 4 3 2 6 6 C 1.37665 * 119.68644 * 0.22831 * 5 4 3 7 7 C 1.37932 * 120.11130 * 179.97438 * 2 1 3 8 8 C 1.50631 * 122.56652 * 179.61568 * 6 5 4 9 9 H 1.08998 * 109.25357 * 257.53180 * 8 6 5 10 10 N 1.46903 * 109.25067 * 138.06552 * 8 6 5 11 11 C 1.46903 * 110.99854 * 153.89050 * 10 8 6 12 12 C 1.53007 * 109.46898 * 273.45666 * 11 10 8 13 13 C 1.52995 * 109.46880 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47092 * 60.00107 * 13 12 11 15 15 C 1.50702 * 109.46979 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00273 * 120.00552 * 15 14 13 17 17 C 1.37880 * 119.99897 * 299.99405 * 15 14 13 18 18 N 1.31513 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46894 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47020 * 120.00144 * 19 17 15 22 22 H 1.48500 * 109.47314 * 240.00747 * 19 17 15 23 23 C 1.52997 * 109.47180 * 299.99793 * 14 13 12 24 24 C 1.52997 * 109.47079 * 153.45769 * 11 10 8 25 25 C 1.52728 * 110.58896 * 17.77874 * 8 6 5 26 26 C 1.53328 * 108.39159 * 308.90250 * 25 8 6 27 27 C 1.50632 * 117.75515 * 180.56863 * 5 4 3 28 28 H 1.08994 * 109.47413 * 270.02395 * 1 2 3 29 29 H 1.09005 * 109.47147 * 30.02541 * 1 2 3 30 30 H 1.09002 * 109.47082 * 150.01838 * 1 2 3 31 31 H 1.07994 * 120.11561 * 359.84165 * 3 2 1 32 32 H 1.08006 * 119.72791 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.72794 * 0.05614 * 7 2 1 34 34 H 1.00899 * 111.00023 * 277.83854 * 10 8 6 35 35 H 1.08998 * 109.47258 * 33.45448 * 11 10 8 36 36 H 1.08998 * 109.46989 * 299.99947 * 12 11 10 37 37 H 1.09001 * 109.46693 * 60.00080 * 12 11 10 38 38 H 1.08998 * 109.47263 * 299.99775 * 13 12 11 39 39 H 1.09005 * 109.47057 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47338 * 59.99714 * 14 13 12 41 41 H 0.97000 * 120.00256 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.46921 * 300.00176 * 23 14 13 43 43 H 1.09004 * 109.47191 * 180.02562 * 23 14 13 44 44 H 1.08995 * 109.47028 * 299.99961 * 24 11 10 45 45 H 1.08998 * 109.47338 * 59.99728 * 24 11 10 46 46 H 1.09000 * 109.68066 * 68.62274 * 25 8 6 47 47 H 1.09006 * 109.68234 * 189.17504 * 25 8 6 48 48 H 1.08997 * 109.68741 * 310.13842 * 26 25 8 49 49 H 1.08999 * 109.68066 * 189.58554 * 26 25 8 50 50 H 1.09003 * 109.24984 * 317.73973 * 27 5 4 51 51 H 1.09003 * 109.25302 * 77.19729 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5800 1.1878 0.0030 5 6 4.2787 -0.0128 0.0065 6 6 3.5881 -1.2037 0.0022 7 6 2.1990 -1.1932 0.0005 8 6 4.2795 -2.5419 -0.0028 9 1 4.2469 -2.9595 -1.0091 10 7 3.5854 -3.4492 0.9208 11 6 3.7802 -4.8511 0.5274 12 6 2.7157 -5.2455 -0.4985 13 6 2.9181 -6.7057 -0.9077 14 6 2.7950 -7.6027 0.3255 15 6 2.9938 -9.0411 -0.0777 16 1 3.7991 -9.6168 0.3543 17 6 2.1476 -9.6224 -0.9981 18 7 1.1672 -8.9214 -1.5244 19 14 2.3944 -11.4051 -1.4985 20 1 3.5585 -11.9676 -0.7681 21 1 1.1764 -12.1861 -1.1644 22 1 2.6442 -11.4788 -2.9605 23 6 3.8595 -7.2084 1.3513 24 6 3.6575 -5.7486 1.7604 25 6 5.7357 -2.3958 0.4339 26 6 6.3831 -1.2868 -0.4040 27 6 5.7836 0.0515 0.0228 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6645 2.1335 -0.0026 32 1 4.1212 2.1224 0.0025 33 1 1.6564 -2.1269 0.0000 34 1 3.8851 -3.2956 1.8719 35 1 4.7704 -4.9709 0.0878 36 1 1.7255 -5.1257 -0.0589 37 1 2.8031 -4.6060 -1.3769 38 1 3.9083 -6.8259 -1.3472 39 1 2.1595 -6.9868 -1.6382 40 1 1.8048 -7.4825 0.7650 41 1 0.5715 -9.3303 -2.1716 42 1 4.8497 -7.3286 0.9119 43 1 3.7721 -7.8478 2.2298 44 1 4.4158 -5.4676 2.4911 45 1 2.6673 -5.6287 2.2000 46 1 5.7772 -2.1295 1.4901 47 1 6.2640 -3.3352 0.2706 48 1 6.1805 -1.4595 -1.4609 49 1 7.4595 -1.2782 -0.2326 50 1 6.1175 0.8301 -0.6631 51 1 6.1222 0.2914 1.0308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331820.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:56 Heat of formation + Delta-G solvation = -16.460666 kcal Electronic energy + Delta-G solvation = -26556.037556 eV Core-core repulsion = 23224.693194 eV Total energy + Delta-G solvation = -3331.344362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.27555 -38.16885 -36.54222 -34.54136 -32.61038 -31.77852 -30.84367 -29.71659 -29.03177 -27.58254 -26.13926 -24.22925 -23.14062 -22.00781 -21.98749 -21.39188 -20.27476 -19.17892 -18.61877 -16.29422 -16.25481 -15.70537 -15.47070 -14.97833 -14.63436 -14.56324 -14.06535 -13.78153 -13.65974 -13.56113 -13.16984 -12.96044 -12.86266 -12.69790 -12.55727 -12.26105 -12.07837 -11.99692 -11.59668 -11.38434 -11.23168 -11.18387 -11.08250 -11.00260 -10.71441 -10.66685 -10.46188 -10.40599 -10.21644 -10.10508 -9.80228 -9.30405 -8.87421 -8.65659 -8.59435 -8.34520 -8.25375 -8.06881 -5.93447 -3.99440 1.38938 1.49806 3.31460 3.39683 3.43367 3.76249 4.33109 4.47657 4.58746 4.67457 4.83052 4.91811 4.98671 5.09262 5.15724 5.32737 5.35257 5.39017 5.42931 5.50941 5.51478 5.54765 5.61742 5.66357 5.73105 5.79701 5.85729 5.91247 5.94459 6.00210 6.12969 6.18708 6.21528 6.25901 6.38161 6.44978 6.47336 6.53593 6.64819 6.70821 6.73164 6.78770 6.81330 6.98643 7.12793 7.19088 7.30258 7.44522 7.61071 7.66147 7.81273 8.08377 8.22704 8.52777 9.05097 9.64952 11.11941 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.003073 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.266167 B = 9109.005650 C = 9953.698560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.123 4.123 4 C -0.128 4.128 5 C -0.084 4.084 6 C -0.063 4.063 7 C -0.084 4.084 8 C 0.127 3.873 9 H 0.088 0.912 10 N -0.679 5.679 11 C 0.092 3.908 12 C -0.101 4.101 13 C -0.109 4.109 14 C 0.049 3.951 15 C -0.512 4.512 16 H 0.053 0.947 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.106 4.106 24 C -0.115 4.115 25 C -0.147 4.147 26 C -0.116 4.116 27 C -0.078 4.078 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.134 0.866 34 H 0.336 0.664 35 H 0.038 0.962 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.029 0.971 39 H 0.092 0.908 40 H 0.025 0.975 41 H 0.258 0.742 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.041 0.959 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 20.543 3.386 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.084 4.084 6 C -0.063 4.063 7 C -0.102 4.102 8 C 0.018 3.982 9 H 0.106 0.894 10 N -0.309 5.309 11 C -0.016 4.016 12 C -0.139 4.139 13 C -0.148 4.148 14 C 0.031 3.969 15 C -0.550 4.550 16 H 0.071 0.929 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.144 4.144 24 C -0.154 4.154 25 C -0.186 4.186 26 C -0.154 4.154 27 C -0.115 4.115 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.110 0.890 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.013 20.556 2.948 21.363 hybrid contribution 1.027 -1.017 -0.062 1.447 sum 6.040 19.539 2.885 20.654 Atomic orbital electron populations 1.20757 0.91434 1.02553 1.02142 1.19900 0.96011 0.93300 1.00745 1.20885 0.94091 0.97356 1.01763 1.20997 0.94187 0.97098 1.02303 1.19580 0.95200 0.92544 1.01115 1.19559 0.93675 0.93370 0.99717 1.21176 0.93654 0.97850 0.97534 1.20345 0.89814 0.90250 0.97835 0.89380 1.60660 1.60514 1.04447 1.05256 1.21623 0.97950 0.85419 0.96635 1.21610 0.97950 0.98181 0.96158 1.21615 1.00849 0.90744 1.01550 1.18645 0.93524 0.93880 0.90867 1.21282 1.13649 0.96402 1.23695 0.92883 1.24965 0.95222 0.97541 0.96302 1.69889 1.17340 1.35811 1.29804 0.86618 0.77974 0.85609 0.78272 1.19902 1.21121 1.21124 1.21581 1.00502 0.92596 0.99691 1.21708 1.00969 0.96878 0.95795 1.22280 0.97011 0.99173 1.00149 1.21491 0.99437 0.94238 1.00230 1.20441 0.91361 0.98027 1.01643 0.91414 0.92034 0.91377 0.86674 0.86729 0.84851 0.84552 0.94381 0.92371 0.94390 0.95211 0.89012 0.95674 0.93197 0.93662 0.93442 0.94043 0.91836 0.91633 0.91401 0.91532 0.91628 0.91133 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.02 36.01 0.36 -0.75 16 2 C -0.10 -1.20 5.87 -104.72 -0.61 -1.81 16 3 C -0.12 -1.35 9.71 -39.68 -0.39 -1.73 16 4 C -0.13 -1.38 9.61 -39.45 -0.38 -1.76 16 5 C -0.08 -0.97 5.74 -104.62 -0.60 -1.57 16 6 C -0.06 -0.81 5.55 -104.61 -0.58 -1.39 16 7 C -0.08 -1.13 8.87 -39.44 -0.35 -1.48 16 8 C 0.13 1.65 2.28 -69.04 -0.16 1.49 16 9 H 0.09 1.27 7.21 -51.93 -0.37 0.90 16 10 N -0.68 -9.52 5.15 -101.13 -0.52 -10.04 16 11 C 0.09 1.52 2.29 -67.71 -0.15 1.36 16 12 C -0.10 -1.95 5.43 -26.73 -0.15 -2.09 16 13 C -0.11 -2.54 4.98 -26.74 -0.13 -2.68 16 14 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 15 C -0.51 -14.05 8.56 -34.44 -0.29 -14.35 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.11 -2.16 5.14 -26.76 -0.14 -2.30 16 24 C -0.12 -1.97 5.17 -26.76 -0.14 -2.11 16 25 C -0.15 -1.62 5.22 -26.70 -0.14 -1.76 16 26 C -0.12 -1.11 5.98 -26.70 -0.16 -1.27 16 27 C -0.08 -0.73 5.67 -28.05 -0.16 -0.89 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.11 0.99 8.05 -52.48 -0.42 0.57 16 33 H 0.13 1.94 7.61 -52.49 -0.40 1.54 16 34 H 0.34 4.41 7.94 -39.29 -0.31 4.10 16 35 H 0.04 0.64 7.19 -51.93 -0.37 0.27 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.70 7.54 -51.93 -0.39 0.31 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 47 H 0.07 0.78 7.58 -51.93 -0.39 0.38 16 48 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 51 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -27.99 385.84 -12.82 -40.82 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -9.27 Total: 4.35 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -4.46 Total: -32.48 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.11 Total: -34.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.99 -12.82 -40.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331820.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.356 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds