Wall clock time and date at job start Tue Mar 31 2020 10:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38268 * 120.11276 * 2 1 4 4 C 1.37926 * 119.76719 * 179.85851 * 3 2 1 5 5 C 1.38911 * 120.54735 * 359.97438 * 4 3 2 6 6 C 1.37665 * 119.68644 * 0.22831 * 5 4 3 7 7 C 1.37932 * 120.11130 * 179.97438 * 2 1 3 8 8 C 1.50631 * 122.56652 * 179.61568 * 6 5 4 9 9 H 1.08998 * 109.25357 * 257.53180 * 8 6 5 10 10 N 1.46903 * 109.25067 * 138.06552 * 8 6 5 11 11 C 1.46903 * 110.99854 * 153.89050 * 10 8 6 12 12 C 1.53007 * 109.46898 * 273.45666 * 11 10 8 13 13 C 1.52995 * 109.46880 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47092 * 60.00107 * 13 12 11 15 15 C 1.50702 * 109.46979 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00273 * 120.00552 * 15 14 13 17 17 C 1.37880 * 119.99897 * 299.99405 * 15 14 13 18 18 N 1.31513 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46894 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47020 * 120.00144 * 19 17 15 22 22 H 1.48500 * 109.47314 * 240.00747 * 19 17 15 23 23 C 1.52997 * 109.47180 * 299.99793 * 14 13 12 24 24 C 1.52997 * 109.47079 * 153.45769 * 11 10 8 25 25 C 1.52728 * 110.58896 * 17.77874 * 8 6 5 26 26 C 1.53328 * 108.39159 * 308.90250 * 25 8 6 27 27 C 1.50632 * 117.75515 * 180.56863 * 5 4 3 28 28 H 1.08994 * 109.47413 * 270.02395 * 1 2 3 29 29 H 1.09005 * 109.47147 * 30.02541 * 1 2 3 30 30 H 1.09002 * 109.47082 * 150.01838 * 1 2 3 31 31 H 1.07994 * 120.11561 * 359.84165 * 3 2 1 32 32 H 1.08006 * 119.72791 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.72794 * 0.05614 * 7 2 1 34 34 H 1.00899 * 111.00023 * 277.83854 * 10 8 6 35 35 H 1.08998 * 109.47258 * 33.45448 * 11 10 8 36 36 H 1.08998 * 109.46989 * 299.99947 * 12 11 10 37 37 H 1.09001 * 109.46693 * 60.00080 * 12 11 10 38 38 H 1.08998 * 109.47263 * 299.99775 * 13 12 11 39 39 H 1.09005 * 109.47057 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47338 * 59.99714 * 14 13 12 41 41 H 0.97000 * 120.00256 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.46921 * 300.00176 * 23 14 13 43 43 H 1.09004 * 109.47191 * 180.02562 * 23 14 13 44 44 H 1.08995 * 109.47028 * 299.99961 * 24 11 10 45 45 H 1.08998 * 109.47338 * 59.99728 * 24 11 10 46 46 H 1.09000 * 109.68066 * 68.62274 * 25 8 6 47 47 H 1.09006 * 109.68234 * 189.17504 * 25 8 6 48 48 H 1.08997 * 109.68741 * 310.13842 * 26 25 8 49 49 H 1.08999 * 109.68066 * 189.58554 * 26 25 8 50 50 H 1.09003 * 109.24984 * 317.73973 * 27 5 4 51 51 H 1.09003 * 109.25302 * 77.19729 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5800 1.1878 0.0030 5 6 4.2787 -0.0128 0.0065 6 6 3.5881 -1.2037 0.0022 7 6 2.1990 -1.1932 0.0005 8 6 4.2795 -2.5419 -0.0028 9 1 4.2469 -2.9595 -1.0091 10 7 3.5854 -3.4492 0.9208 11 6 3.7802 -4.8511 0.5274 12 6 2.7157 -5.2455 -0.4985 13 6 2.9181 -6.7057 -0.9077 14 6 2.7950 -7.6027 0.3255 15 6 2.9938 -9.0411 -0.0777 16 1 3.7991 -9.6168 0.3543 17 6 2.1476 -9.6224 -0.9981 18 7 1.1672 -8.9214 -1.5244 19 14 2.3944 -11.4051 -1.4985 20 1 3.5585 -11.9676 -0.7681 21 1 1.1764 -12.1861 -1.1644 22 1 2.6442 -11.4788 -2.9605 23 6 3.8595 -7.2084 1.3513 24 6 3.6575 -5.7486 1.7604 25 6 5.7357 -2.3958 0.4339 26 6 6.3831 -1.2868 -0.4040 27 6 5.7836 0.0515 0.0228 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6645 2.1335 -0.0026 32 1 4.1212 2.1224 0.0025 33 1 1.6564 -2.1269 0.0000 34 1 3.8851 -3.2956 1.8719 35 1 4.7704 -4.9709 0.0878 36 1 1.7255 -5.1257 -0.0589 37 1 2.8031 -4.6060 -1.3769 38 1 3.9083 -6.8259 -1.3472 39 1 2.1595 -6.9868 -1.6382 40 1 1.8048 -7.4825 0.7650 41 1 0.5715 -9.3303 -2.1716 42 1 4.8497 -7.3286 0.9119 43 1 3.7721 -7.8478 2.2298 44 1 4.4158 -5.4676 2.4911 45 1 2.6673 -5.6287 2.2000 46 1 5.7772 -2.1295 1.4901 47 1 6.2640 -3.3352 0.2706 48 1 6.1805 -1.4595 -1.4609 49 1 7.4595 -1.2782 -0.2326 50 1 6.1175 0.8301 -0.6631 51 1 6.1222 0.2914 1.0308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331820.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:55 Heat of formation + Delta-G solvation = -28.198231 kcal Electronic energy + Delta-G solvation = -26556.546535 eV Core-core repulsion = 23224.693194 eV Total energy + Delta-G solvation = -3331.853341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.20572 -39.60035 -37.62836 -35.83679 -34.30911 -32.72447 -32.04182 -31.40284 -30.24897 -28.80869 -27.18604 -25.97056 -24.15971 -23.38872 -22.82781 -22.65297 -21.79944 -20.49020 -19.92249 -18.39357 -17.21857 -16.82451 -16.52200 -16.36789 -15.91150 -15.70914 -15.42453 -14.88607 -14.69754 -14.60331 -14.52101 -14.44688 -14.06995 -13.87689 -13.78938 -13.40773 -13.24752 -13.02972 -12.94459 -12.83558 -12.79043 -12.49283 -12.33045 -12.20191 -12.11548 -11.97196 -11.89414 -11.82924 -11.72319 -11.41695 -11.21038 -11.14912 -10.73058 -10.50079 -10.35987 -9.56574 -9.24209 -9.19316 -8.06188 -6.20417 0.50876 0.59435 1.39119 1.40970 1.52148 2.43715 2.85216 3.18840 3.23667 3.72069 3.83129 3.93469 4.05827 4.06200 4.13396 4.17424 4.24357 4.32193 4.43699 4.46143 4.56826 4.59729 4.66682 4.68786 4.76604 4.78391 4.84390 4.86051 4.90003 4.90584 4.97476 4.99210 5.04837 5.10752 5.13113 5.15990 5.19212 5.30636 5.32908 5.37998 5.43573 5.44198 5.50427 5.62388 5.67398 5.72020 5.81487 5.86084 6.05463 6.16247 6.22141 6.28899 6.43057 6.58274 6.93189 7.47585 8.97666 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.003073 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.266167 B = 9109.005650 C = 9953.698560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.112 4.112 3 C -0.125 4.125 4 C -0.129 4.129 5 C -0.090 4.090 6 C -0.078 4.078 7 C -0.107 4.107 8 C 0.131 3.869 9 H 0.067 0.933 10 N -0.679 5.679 11 C 0.107 3.893 12 C -0.089 4.089 13 C -0.099 4.099 14 C 0.046 3.954 15 C -0.534 4.534 16 H 0.051 0.949 17 C 0.010 3.990 18 N -0.917 5.917 19 Si 0.951 3.049 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.099 4.099 24 C -0.107 4.107 25 C -0.142 4.142 26 C -0.114 4.114 27 C -0.075 4.075 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.346 0.654 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.024 0.976 39 H 0.055 0.945 40 H -0.010 1.010 41 H 0.259 0.741 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.664 22.553 4.176 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.143 4.143 4 C -0.147 4.147 5 C -0.090 4.090 6 C -0.079 4.079 7 C -0.125 4.125 8 C 0.021 3.979 9 H 0.085 0.915 10 N -0.309 5.309 11 C -0.002 4.002 12 C -0.127 4.127 13 C -0.138 4.138 14 C 0.028 3.972 15 C -0.572 4.572 16 H 0.069 0.931 17 C -0.188 4.188 18 N -0.556 5.556 19 Si 0.777 3.223 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.181 4.181 26 C -0.152 4.152 27 C -0.112 4.112 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.166 0.834 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.008 0.992 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.103 0.897 50 H 0.106 0.894 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.905 22.576 3.750 23.904 hybrid contribution 0.387 -1.604 -0.329 1.682 sum 7.292 20.972 3.421 22.466 Atomic orbital electron populations 1.20774 0.90432 1.02929 1.02616 1.20144 0.96998 0.93332 1.00682 1.21202 0.94555 0.97750 1.00833 1.21357 0.94326 0.97902 1.01085 1.19880 0.96631 0.92164 1.00329 1.19602 0.93512 0.93864 1.00899 1.21132 0.94227 0.97673 0.99476 1.20291 0.91231 0.89965 0.96381 0.91522 1.60488 1.61360 1.03021 1.06044 1.21302 0.96537 0.86913 0.95451 1.21419 0.98359 0.95635 0.97328 1.21391 0.99095 0.93126 1.00203 1.18614 0.93131 0.93227 0.92254 1.21674 1.13644 0.97956 1.23894 0.93110 1.25755 0.95010 1.01658 0.96380 1.70042 1.18013 1.37422 1.30171 0.85611 0.78070 0.80669 0.77939 1.19114 1.20735 1.20686 1.21443 0.98887 0.95002 0.98362 1.21607 1.01723 0.94543 0.96584 1.22217 0.95341 0.99704 1.00832 1.21491 1.00464 0.93841 0.99375 1.20487 0.89615 0.98246 1.02824 0.90850 0.90268 0.92385 0.84344 0.84070 0.87124 0.83442 0.94175 0.93938 0.93990 0.95711 0.92670 0.99156 0.93218 0.93389 0.93403 0.90616 0.92557 0.90833 0.91839 0.92396 0.89721 0.89424 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 10.02 71.24 0.71 -1.44 16 2 C -0.11 -2.61 5.87 -19.93 -0.12 -2.73 16 3 C -0.13 -2.48 9.71 22.20 0.22 -2.26 16 4 C -0.13 -2.42 9.61 22.36 0.21 -2.21 16 5 C -0.09 -1.87 5.74 -19.86 -0.11 -1.99 16 6 C -0.08 -1.97 5.55 -19.86 -0.11 -2.08 16 7 C -0.11 -2.92 8.87 22.36 0.20 -2.72 16 8 C 0.13 3.32 2.28 44.06 0.10 3.42 16 9 H 0.07 1.96 7.21 -2.39 -0.02 1.94 16 10 N -0.68 -18.75 5.15 -473.88 -2.44 -21.19 16 11 C 0.11 3.50 2.29 44.92 0.10 3.61 16 12 C -0.09 -3.58 5.43 30.59 0.17 -3.42 16 13 C -0.10 -4.85 4.98 30.59 0.15 -4.70 16 14 C 0.05 2.35 2.10 -11.54 -0.02 2.33 16 15 C -0.53 -30.04 8.56 25.60 0.22 -29.83 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.58 5.30 84.66 0.45 1.03 16 18 N -0.92 -54.32 11.32 21.45 0.24 -54.07 16 19 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 C -0.10 -4.05 5.14 30.57 0.16 -3.89 16 24 C -0.11 -3.54 5.17 30.57 0.16 -3.39 16 25 C -0.14 -2.86 5.22 30.61 0.16 -2.70 16 26 C -0.11 -1.89 5.98 30.61 0.18 -1.71 16 27 C -0.07 -1.16 5.67 29.74 0.17 -0.99 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.22 8.09 -2.38 -0.02 1.20 16 30 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 31 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.14 1.86 8.05 -2.91 -0.02 1.84 16 33 H 0.11 3.44 7.61 -2.91 -0.02 3.42 16 34 H 0.35 8.54 7.94 -89.69 -0.71 7.83 16 35 H 0.04 1.32 7.19 -2.39 -0.02 1.30 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.04 1.62 7.54 -2.39 -0.02 1.61 16 38 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 3.09 6.07 -2.38 -0.01 3.07 16 40 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.08 2.05 8.12 -2.39 -0.02 2.03 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 1.37 7.92 -2.39 -0.02 1.36 16 47 H 0.06 1.33 7.58 -2.38 -0.02 1.32 16 48 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.09 1.09 8.13 -2.39 -0.02 1.07 16 51 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -62.66 385.84 2.99 -59.67 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.17 Total: 24.74 kcal Atomic # 6 Polarization: -58.65 SS G_CDS: 2.99 Total: -55.65 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -2.20 Total: -75.26 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -62.66 2.99 -59.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331820.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.467 kcal (2) G-P(sol) polarization free energy of solvation -62.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds