Wall clock time and date at job start Tue Mar 31 2020 10:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00003 * 2 1 4 4 H 1.48498 * 109.46633 * 274.97627 * 3 2 1 5 5 H 1.48495 * 109.46865 * 34.97429 * 3 2 1 6 6 H 1.48494 * 109.47331 * 154.97892 * 3 2 1 7 7 C 1.37882 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99875 * 180.54457 * 7 2 1 9 9 C 1.50703 * 119.99940 * 0.54808 * 7 2 1 10 10 C 1.52995 * 109.47256 * 184.64097 * 9 7 2 11 11 C 1.53002 * 109.47196 * 300.00133 * 10 9 7 12 12 C 1.52999 * 109.46834 * 300.00010 * 11 10 9 13 13 N 1.46904 * 109.47093 * 180.02562 * 12 11 10 14 14 C 1.46853 * 110.99900 * 304.69670 * 13 12 11 15 15 C 1.53030 * 109.52420 * 185.84066 * 14 13 12 16 16 C 1.53120 * 109.27669 * 300.82194 * 15 14 13 17 17 C 1.53118 * 109.15979 * 57.65838 * 16 15 14 18 18 C 1.46839 * 110.99899 * 68.91054 * 13 12 11 19 19 H 1.09002 * 109.46163 * 294.16395 * 18 13 12 20 20 C 1.50695 * 109.46524 * 54.14761 * 18 13 12 21 21 C 1.38230 * 120.00045 * 47.49284 * 20 18 13 22 22 C 1.38238 * 119.99758 * 180.26047 * 21 20 18 23 23 C 1.38234 * 120.00164 * 359.50807 * 22 21 20 24 24 C 1.38232 * 120.00040 * 0.28016 * 23 22 21 25 25 C 1.38241 * 119.99650 * 227.28468 * 20 18 13 26 26 C 1.53001 * 109.47485 * 59.99827 * 12 11 10 27 27 C 1.52999 * 109.47083 * 64.63898 * 9 7 2 28 28 H 0.96993 * 120.00227 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46987 * 304.64209 * 9 7 2 30 30 H 1.08993 * 109.47543 * 180.02562 * 10 9 7 31 31 H 1.09007 * 109.46894 * 59.99504 * 10 9 7 32 32 H 1.08998 * 109.47228 * 179.97438 * 11 10 9 33 33 H 1.09007 * 109.47091 * 59.99719 * 11 10 9 34 34 H 1.08998 * 109.47306 * 299.99829 * 12 11 10 35 35 H 1.09003 * 109.46134 * 305.85625 * 14 13 12 36 36 H 1.09000 * 109.45752 * 65.82344 * 14 13 12 37 37 H 1.08999 * 109.50413 * 60.76175 * 15 14 13 38 38 H 1.08998 * 109.50730 * 180.88054 * 15 14 13 39 39 H 1.09003 * 109.52269 * 177.55970 * 16 15 14 40 40 H 1.08997 * 109.52811 * 297.68565 * 16 15 14 41 41 H 1.09000 * 109.50095 * 182.40567 * 17 16 15 42 42 H 1.08995 * 109.50661 * 62.28389 * 17 16 15 43 43 H 1.07993 * 120.00544 * 0.04280 * 21 20 18 44 44 H 1.08005 * 120.00010 * 179.78664 * 22 21 20 45 45 H 1.08000 * 120.00632 * 180.25786 * 23 22 21 46 46 H 1.07998 * 120.00559 * 179.97438 * 24 23 22 47 47 H 1.07996 * 120.00196 * 359.97438 * 25 20 18 48 48 H 1.09007 * 109.47053 * 59.99916 * 26 12 11 49 49 H 1.08995 * 109.47670 * 179.97438 * 26 12 11 50 50 H 1.08998 * 109.47306 * 180.02562 * 27 9 7 51 51 H 1.08998 * 109.47359 * 300.00097 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3914 2.1071 -1.3948 5 1 1.5031 2.6200 0.8025 6 1 3.5953 1.4122 0.5921 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0094 9 6 1.2512 -2.4992 -0.0114 10 6 2.2403 -3.6602 0.1085 11 6 3.2153 -3.6234 -1.0701 12 6 2.4360 -3.7505 -2.3806 13 7 3.3721 -3.7157 -3.5123 14 6 4.2041 -2.5064 -3.4700 15 6 5.0613 -2.4309 -4.7355 16 6 5.9451 -3.6783 -4.8225 17 6 5.0565 -4.9252 -4.8162 18 6 4.1993 -4.9284 -3.5483 19 1 4.8473 -4.9523 -2.6721 20 6 3.3087 -6.1440 -3.5474 21 6 2.2289 -6.2104 -4.4080 22 6 1.4088 -7.3232 -4.4034 23 6 1.6744 -8.3740 -3.5453 24 6 2.7566 -8.3095 -2.6879 25 6 3.5740 -7.1946 -2.6890 26 6 1.4468 -2.5895 -2.5005 27 6 0.4719 -2.6263 -1.3219 28 1 -0.4850 0.8400 0.0004 29 1 0.5566 -2.5254 0.8284 30 1 1.6955 -4.6042 0.0994 31 1 2.7955 -3.5696 1.0422 32 1 3.9202 -4.4503 -0.9844 33 1 3.7602 -2.6794 -1.0615 34 1 1.8911 -4.6944 -2.3893 35 1 3.5633 -1.6265 -3.4125 36 1 4.8519 -2.5417 -2.5941 37 1 4.4141 -2.3817 -5.6111 38 1 5.6901 -1.5414 -4.6966 39 1 6.5259 -3.6496 -5.7444 40 1 6.6204 -3.7068 -3.9674 41 1 5.6818 -5.8178 -4.8349 42 1 4.4091 -4.9152 -5.6930 43 1 2.0240 -5.3914 -5.0815 44 1 0.5631 -7.3736 -5.0733 45 1 1.0361 -9.2452 -3.5446 46 1 2.9640 -9.1302 -2.0172 47 1 4.4198 -7.1444 -2.0193 48 1 1.9917 -1.6454 -2.4919 49 1 0.8920 -2.6797 -3.4344 50 1 -0.0734 -3.5700 -1.3304 51 1 -0.2328 -1.7992 -1.4073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:52 Heat of formation + Delta-G solvation = 4.399686 kcal Electronic energy + Delta-G solvation = -28060.316529 eV Core-core repulsion = 24729.876740 eV Total energy + Delta-G solvation = -3330.439789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.25479 -38.36386 -36.79923 -33.43276 -32.51366 -31.58264 -30.76291 -29.60841 -28.90431 -27.95683 -24.85785 -23.82518 -23.47280 -22.47859 -21.61022 -20.89178 -20.36191 -19.14258 -18.25556 -16.78510 -15.80082 -15.68613 -15.23295 -14.96942 -14.63980 -14.28709 -14.04217 -13.86728 -13.61432 -13.50862 -13.19068 -13.03385 -12.94596 -12.58612 -12.45078 -12.22008 -11.69125 -11.44277 -11.26247 -11.21480 -11.17338 -10.96484 -10.90069 -10.81594 -10.58954 -10.53621 -10.39664 -10.29532 -10.03405 -9.92981 -9.45426 -9.17684 -8.81869 -8.76196 -8.61296 -8.49037 -8.23444 -7.71591 -5.93612 -3.96182 1.47598 1.55212 3.31031 3.39123 3.41397 3.89636 4.25534 4.47530 4.74850 4.98476 5.02339 5.08147 5.09603 5.21112 5.31683 5.38611 5.39538 5.53306 5.63657 5.67604 5.71962 5.74603 5.80097 5.86507 5.97818 6.01313 6.04796 6.12642 6.13906 6.18247 6.25296 6.32365 6.42064 6.47352 6.55158 6.58659 6.60079 6.64426 6.68695 6.75144 6.82317 6.84153 6.92019 7.11976 7.13642 7.21442 7.43085 7.58297 7.62689 7.71047 7.80273 8.01118 8.16861 8.53986 9.06641 9.66526 11.14231 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.004912 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.594451 B = 5699.461621 C = 6833.350176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.880 3.120 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.052 0.948 9 C 0.044 3.956 10 C -0.102 4.102 11 C -0.134 4.134 12 C 0.092 3.908 13 N -0.524 5.524 14 C 0.051 3.949 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.104 4.104 18 C 0.122 3.878 19 H 0.046 0.954 20 C -0.067 4.067 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.117 4.117 26 C -0.090 4.090 27 C -0.102 4.102 28 H 0.258 0.742 29 H 0.026 0.974 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.128 0.872 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.070 0.930 49 H 0.037 0.963 50 H 0.014 0.986 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.803 -12.776 -9.991 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.140 4.140 11 C -0.173 4.173 12 C -0.015 4.015 13 N -0.247 5.247 14 C -0.077 4.077 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.142 4.142 18 C 0.013 3.987 19 H 0.064 0.936 20 C -0.067 4.067 21 C -0.108 4.108 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.142 4.142 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.141 4.141 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.146 0.854 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.089 0.911 49 H 0.056 0.944 50 H 0.032 0.968 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.388 -12.622 -10.433 17.965 hybrid contribution 0.904 0.906 0.899 1.564 sum 8.292 -11.716 -9.534 17.231 Atomic orbital electron populations 1.69906 1.05792 1.26118 1.51183 1.24928 0.94712 0.98664 0.95567 0.86762 0.80038 0.84403 0.77915 1.20832 1.21381 1.20075 1.21115 0.92532 0.90411 1.49548 0.92934 1.18684 0.93003 0.91960 0.93795 1.21479 0.97725 0.98606 0.96169 1.22028 0.98328 1.00442 0.96490 1.21756 0.92924 0.99970 0.86891 1.62261 1.17843 1.00484 1.44125 1.22142 0.95511 0.93926 0.96114 1.21613 0.97819 0.97093 0.98973 1.21576 0.97672 0.95159 1.01297 1.21597 0.97477 0.97424 0.97736 1.20513 0.92459 0.88333 0.97357 0.93582 1.19760 0.96270 0.94807 0.95883 1.21048 0.93930 0.97398 0.98450 1.21160 0.99597 0.94113 0.99445 1.21083 0.97778 0.98784 0.96821 1.21031 0.95729 0.98106 0.99297 1.21020 0.99869 0.93853 0.98798 1.21397 0.96543 0.97396 0.97398 1.21448 0.97890 0.98909 0.95837 0.93227 0.95620 0.95043 0.93889 0.95032 0.91010 0.90985 0.89576 0.94567 0.91354 0.91976 0.92198 0.92470 0.92109 0.91125 0.85387 0.86407 0.86614 0.86524 0.86632 0.91136 0.94376 0.96755 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 11.69 55.43 0.65 -24.62 16 2 C 0.06 1.68 5.32 -17.82 -0.09 1.59 16 3 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.50 -13.12 6.64 -34.44 -0.23 -13.35 16 8 H 0.05 1.39 6.54 -52.49 -0.34 1.04 16 9 C 0.04 1.08 2.50 -91.77 -0.23 0.85 16 10 C -0.10 -2.15 5.42 -26.73 -0.14 -2.29 16 11 C -0.13 -2.55 4.25 -26.73 -0.11 -2.67 16 12 C 0.09 1.66 1.87 -67.71 -0.13 1.53 16 13 N -0.52 -8.12 4.02 -220.14 -0.89 -9.01 16 14 C 0.05 0.78 4.57 -3.83 -0.02 0.76 16 15 C -0.12 -1.46 6.09 -26.65 -0.16 -1.63 16 16 C -0.12 -1.33 6.00 -26.61 -0.16 -1.49 16 17 C -0.10 -1.22 5.30 -26.65 -0.14 -1.36 16 18 C 0.12 1.67 1.69 -68.88 -0.12 1.55 16 19 H 0.05 0.67 6.63 -51.93 -0.34 0.33 16 20 C -0.07 -0.91 3.38 -104.63 -0.35 -1.26 16 21 C -0.09 -1.21 8.36 -39.58 -0.33 -1.54 16 22 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 23 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 24 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 25 C -0.12 -1.50 9.67 -39.58 -0.38 -1.89 16 26 C -0.09 -1.85 4.89 -26.73 -0.13 -1.98 16 27 C -0.10 -2.39 5.28 -26.73 -0.14 -2.53 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 32 H 0.03 0.55 6.77 -51.93 -0.35 0.20 16 33 H 0.07 1.48 4.86 -51.93 -0.25 1.23 16 34 H 0.07 1.36 6.07 -51.93 -0.32 1.04 16 35 H 0.09 1.49 6.17 -51.93 -0.32 1.17 16 36 H 0.04 0.59 6.58 -51.93 -0.34 0.25 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.84 8.02 -51.93 -0.42 0.43 16 43 H 0.13 1.74 7.95 -52.49 -0.42 1.33 16 44 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 45 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.12 1.36 7.99 -52.49 -0.42 0.94 16 48 H 0.07 1.59 5.47 -51.93 -0.28 1.31 16 49 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.08 2.15 6.47 -51.93 -0.34 1.81 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -27.32 371.36 -12.50 -39.82 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.77 Total: 3.50 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -4.07 Total: -31.34 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.24 Total: -33.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.32 -12.50 -39.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.224 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds