Wall clock time and date at job start Tue Mar 31 2020 10:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00004 * 2 1 4 4 C 1.38237 * 119.99895 * 179.78883 * 3 2 1 5 5 C 1.38233 * 120.00045 * 0.44044 * 4 3 2 6 6 C 1.50692 * 120.00236 * 179.83124 * 5 4 3 7 7 H 1.09004 * 110.33761 * 162.23051 * 6 5 4 8 8 C 1.54906 * 110.37522 * 284.60788 * 6 5 4 9 9 C 1.55143 * 101.65369 * 155.89634 * 8 6 5 10 10 C 1.54317 * 103.02033 * 324.35081 * 9 8 6 11 11 N 1.47450 * 107.23396 * 22.27811 * 10 9 8 12 12 C 1.46897 * 110.99768 * 123.26523 * 11 10 9 13 13 C 1.52999 * 109.47191 * 179.15882 * 12 11 10 14 14 C 1.52997 * 109.47339 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47270 * 59.99670 * 14 13 12 16 16 C 1.50709 * 109.46574 * 60.00139 * 15 14 13 17 17 H 1.08002 * 119.99957 * 275.11927 * 16 15 14 18 18 C 1.37868 * 119.99930 * 95.12096 * 16 15 14 19 19 N 1.31513 * 119.99970 * 186.42491 * 18 16 15 20 20 Si 1.86804 * 120.00311 * 6.42312 * 18 16 15 21 21 H 1.48498 * 109.46906 * 84.90020 * 20 18 16 22 22 H 1.48493 * 109.47342 * 204.90252 * 20 18 16 23 23 H 1.48505 * 109.47021 * 324.90273 * 20 18 16 24 24 C 1.52999 * 109.47209 * 300.00409 * 15 14 13 25 25 C 1.52997 * 109.47339 * 59.99633 * 24 15 14 26 26 C 1.38245 * 119.99944 * 359.81362 * 5 4 3 27 27 C 1.38234 * 119.99829 * 180.27358 * 2 1 3 28 28 H 1.09004 * 109.47466 * 269.72490 * 1 2 3 29 29 H 1.09001 * 109.47208 * 29.72363 * 1 2 3 30 30 H 1.09002 * 109.47629 * 149.72462 * 1 2 3 31 31 H 1.07998 * 119.99934 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.99748 * 180.27445 * 4 3 2 33 33 H 1.08997 * 110.99141 * 273.98243 * 8 6 5 34 34 H 1.08994 * 110.99099 * 37.80666 * 8 6 5 35 35 H 1.08995 * 110.70985 * 205.96601 * 9 8 6 36 36 H 1.09002 * 110.85462 * 82.79896 * 9 8 6 37 37 H 1.09002 * 109.88583 * 262.87600 * 10 9 8 38 38 H 1.08994 * 109.89793 * 141.69042 * 10 9 8 39 39 H 1.09002 * 109.46985 * 299.15660 * 12 11 10 40 40 H 1.08996 * 109.47373 * 299.99849 * 13 12 11 41 41 H 1.09009 * 109.46746 * 59.99767 * 13 12 11 42 42 H 1.09002 * 109.47170 * 299.99982 * 14 13 12 43 43 H 1.09000 * 109.47034 * 180.02562 * 14 13 12 44 44 H 1.08994 * 109.47231 * 179.97438 * 15 14 13 45 45 H 0.97007 * 120.00240 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.46975 * 299.99531 * 24 15 14 47 47 H 1.08995 * 109.46792 * 179.97438 * 24 15 14 48 48 H 1.09001 * 109.47504 * 180.02562 * 25 24 15 49 49 H 1.09002 * 109.47170 * 60.00018 * 25 24 15 50 50 H 1.07991 * 119.99987 * 179.97438 * 26 5 4 51 51 H 1.07999 * 120.00419 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0044 5 6 4.2717 0.0000 -0.0004 6 6 5.7786 0.0000 0.0006 7 1 6.1572 -0.9747 0.3085 8 6 6.3189 0.3723 -1.4026 9 6 7.7280 0.9235 -1.0598 10 6 7.5020 1.6418 0.2872 11 7 6.2927 1.0580 0.8961 12 6 6.5828 0.5217 2.2326 13 6 5.3024 -0.0553 2.8395 14 6 5.6046 -0.6145 4.2312 15 6 6.1336 0.5068 5.1276 16 6 5.0956 1.5939 5.2376 17 1 5.0375 2.3635 4.4820 18 6 4.2202 1.6060 6.3026 19 7 3.2356 2.4772 6.3346 20 14 4.4327 0.3849 7.7003 21 1 5.4121 0.9196 8.6800 22 1 3.1264 0.1703 8.3730 23 1 4.9286 -0.9059 7.1587 24 6 7.4141 1.0838 4.5207 25 6 7.1118 1.6430 3.1290 26 6 3.5805 -1.1972 -0.0057 27 6 2.1981 -1.1971 -0.0057 28 1 -0.3634 -0.0049 1.0277 29 1 -0.3634 0.8925 -0.5095 30 1 -0.3634 -0.8875 -0.5181 31 1 1.6582 2.1324 -0.0004 32 1 4.1205 2.1324 0.0089 33 1 6.3889 -0.5087 -2.0405 34 1 5.7014 1.1409 -1.8674 35 1 8.0618 1.6284 -1.8212 36 1 8.4458 0.1110 -0.9476 37 1 7.3542 2.7085 0.1183 38 1 8.3598 1.4831 0.9406 39 1 7.3337 -0.2645 2.1534 40 1 4.5515 0.7308 2.9187 41 1 4.9258 -0.8546 2.2011 42 1 6.3553 -1.4008 4.1517 43 1 4.6924 -1.0260 4.6634 44 1 6.3485 0.1086 6.1192 45 1 2.6194 2.4855 7.0838 46 1 8.1648 0.2976 4.4411 47 1 7.7906 1.8830 5.1591 48 1 8.0241 2.0537 2.6964 49 1 6.3611 2.4293 3.2085 50 1 4.1204 -2.1324 -0.0098 51 1 1.6582 -2.1325 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173335002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:37 Heat of formation + Delta-G solvation = 8.211046 kcal Electronic energy + Delta-G solvation = -27638.887527 eV Core-core repulsion = 24308.613010 eV Total energy + Delta-G solvation = -3330.274516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09023 -38.47086 -36.89534 -33.05541 -32.64617 -31.30894 -30.58806 -30.03191 -28.85200 -27.90187 -25.77021 -24.50618 -22.50375 -22.12774 -21.91769 -20.84224 -20.10876 -19.47110 -18.62610 -16.51609 -16.17306 -16.05220 -15.04589 -14.84348 -14.64413 -14.39880 -13.83441 -13.57421 -13.38069 -13.28007 -13.08022 -13.06865 -12.91561 -12.68201 -12.45091 -12.12680 -12.03023 -11.91184 -11.52892 -11.45107 -11.14002 -11.06110 -10.94659 -10.81395 -10.72757 -10.62570 -10.54414 -10.46539 -10.18986 -9.97470 -9.60407 -9.18219 -9.00191 -8.68208 -8.54559 -8.35515 -8.10351 -7.95551 -5.95292 -3.91538 1.64092 1.77071 3.34628 3.43188 3.45208 3.97012 4.25559 4.51997 4.67498 4.83240 5.00130 5.07493 5.11086 5.25977 5.33653 5.35200 5.38524 5.53130 5.57491 5.59092 5.66422 5.72618 5.75015 5.81555 5.87192 5.89168 5.94925 5.97791 6.03465 6.09792 6.21865 6.25052 6.29362 6.36375 6.41222 6.42809 6.45718 6.51484 6.58353 6.74436 6.80808 6.85627 6.91342 6.96627 7.14138 7.21664 7.29558 7.31297 7.37620 7.44838 7.60764 7.65828 7.94157 8.67490 9.12762 9.69352 11.17845 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.005609 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.527152 B = 4990.532652 C = 6790.265433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.077 4.077 5 C -0.064 4.064 6 C 0.114 3.886 7 H 0.058 0.942 8 C -0.118 4.118 9 C -0.142 4.142 10 C 0.042 3.958 11 N -0.516 5.516 12 C 0.093 3.907 13 C -0.094 4.094 14 C -0.105 4.105 15 C 0.009 3.991 16 C -0.496 4.496 17 H 0.079 0.921 18 C 0.068 3.932 19 N -0.903 5.903 20 Si 0.872 3.128 21 H -0.279 1.279 22 H -0.293 1.293 23 H -0.267 1.267 24 C -0.099 4.099 25 C -0.101 4.101 26 C -0.116 4.116 27 C -0.125 4.125 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.024 0.976 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.023 0.977 43 H 0.049 0.951 44 H 0.027 0.973 45 H 0.260 0.740 46 H 0.030 0.970 47 H 0.054 0.946 48 H 0.039 0.961 49 H 0.083 0.917 50 H 0.113 0.887 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 -5.753 -16.406 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.095 4.095 5 C -0.064 4.064 6 C 0.006 3.994 7 H 0.076 0.924 8 C -0.157 4.157 9 C -0.181 4.181 10 C -0.086 4.086 11 N -0.239 5.239 12 C -0.015 4.015 13 C -0.131 4.131 14 C -0.144 4.144 15 C -0.010 4.010 16 C -0.534 4.534 17 H 0.097 0.903 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.700 3.300 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.192 1.192 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.134 4.134 27 C -0.143 4.143 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.101 0.899 50 H 0.131 0.869 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.811 -5.292 -16.221 17.293 hybrid contribution 0.625 -1.323 0.973 1.758 sum 3.436 -6.615 -15.248 16.973 Atomic orbital electron populations 1.20764 0.91774 1.02066 1.02304 1.19835 0.95709 0.93368 1.00293 1.21036 0.94473 0.97250 1.01235 1.20937 0.93295 0.98267 0.97013 1.19553 0.94156 0.93085 0.99632 1.21352 0.91524 0.94391 0.92171 0.92428 1.22736 0.95898 1.01009 0.96012 1.22802 0.97065 1.00125 0.98062 1.22819 0.92272 0.99618 0.93910 1.63489 1.28151 1.30152 1.02139 1.21793 0.97000 0.95386 0.87297 1.21443 0.96742 0.99989 0.94956 1.21681 0.99043 0.97532 0.96155 1.19188 0.93574 0.94369 0.93911 1.21031 1.13373 1.10092 1.08890 0.90292 1.25053 0.94925 0.95208 0.98029 1.69920 1.15946 1.36908 1.31397 0.86952 0.77075 0.82794 0.83176 1.20508 1.21928 1.19217 1.21457 0.97917 0.98694 0.95685 1.21541 0.99641 0.98186 0.94532 1.20887 0.94137 0.97227 1.01180 1.20834 0.93997 0.97172 1.02293 0.91204 0.91874 0.92081 0.86498 0.85494 0.91209 0.90494 0.91020 0.91831 0.90720 0.92450 0.95763 0.89650 0.94205 0.95791 0.93228 0.95505 0.92997 0.95172 0.92719 0.94254 0.89854 0.86900 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 36.00 0.36 -0.91 16 2 C -0.09 -1.29 5.88 -104.63 -0.62 -1.90 16 3 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 4 C -0.08 -1.18 9.18 -39.58 -0.36 -1.55 16 5 C -0.06 -0.93 3.36 -104.63 -0.35 -1.28 16 6 C 0.11 1.56 2.02 -67.34 -0.14 1.43 16 7 H 0.06 0.82 7.49 -51.93 -0.39 0.43 16 8 C -0.12 -1.32 6.47 -24.59 -0.16 -1.48 16 9 C -0.14 -1.49 6.94 -24.91 -0.17 -1.66 16 10 C 0.04 0.54 6.14 -2.83 -0.02 0.52 16 11 N -0.52 -7.87 4.01 -216.84 -0.87 -8.74 16 12 C 0.09 1.62 1.54 -67.71 -0.10 1.52 16 13 C -0.09 -1.87 4.28 -26.73 -0.11 -1.98 16 14 C -0.11 -2.27 5.44 -26.73 -0.15 -2.42 16 15 C 0.01 0.20 2.28 -91.77 -0.21 -0.01 16 16 C -0.50 -13.54 7.31 -34.44 -0.25 -13.79 16 17 H 0.08 2.34 6.26 -52.49 -0.33 2.01 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 20 Si 0.87 21.89 27.04 -169.99 -4.60 17.29 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.27 -6.48 6.76 56.52 0.38 -6.09 16 24 C -0.10 -2.00 5.44 -26.73 -0.15 -2.14 16 25 C -0.10 -1.90 4.84 -26.73 -0.13 -2.03 16 26 C -0.12 -1.62 8.95 -39.58 -0.35 -1.97 16 27 C -0.12 -1.71 9.70 -39.58 -0.38 -2.09 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.13 1.98 7.75 -52.49 -0.41 1.58 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.75 6.29 -51.93 -0.33 0.42 16 39 H 0.02 0.42 8.09 -51.93 -0.42 0.00 16 40 H 0.08 2.02 7.17 -51.93 -0.37 1.65 16 41 H 0.04 0.74 5.61 -51.92 -0.29 0.45 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.03 0.65 5.22 -51.93 -0.27 0.37 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.04 0.65 6.45 -51.93 -0.33 0.31 16 49 H 0.08 1.81 6.30 -51.93 -0.33 1.48 16 50 H 0.11 1.39 8.04 -52.49 -0.42 0.97 16 51 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -29.61 377.38 -11.72 -41.34 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.95 Total: 3.39 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -3.78 Total: -32.08 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.10 Total: -35.63 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.60 Total: 17.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.61 -11.72 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.548 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds