Wall clock time and date at job start Tue Mar 31 2020 10:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00004 * 2 1 4 4 C 1.38237 * 119.99895 * 179.78883 * 3 2 1 5 5 C 1.38233 * 120.00045 * 0.44044 * 4 3 2 6 6 C 1.50692 * 120.00236 * 179.83124 * 5 4 3 7 7 H 1.09004 * 110.33761 * 162.23051 * 6 5 4 8 8 C 1.54906 * 110.37522 * 284.60788 * 6 5 4 9 9 C 1.55143 * 101.65369 * 155.89634 * 8 6 5 10 10 C 1.54317 * 103.02033 * 324.35081 * 9 8 6 11 11 N 1.47450 * 107.23396 * 22.27811 * 10 9 8 12 12 C 1.46897 * 110.99768 * 123.26523 * 11 10 9 13 13 C 1.52999 * 109.47191 * 179.15882 * 12 11 10 14 14 C 1.52997 * 109.47339 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47270 * 59.99670 * 14 13 12 16 16 C 1.50709 * 109.46574 * 60.00139 * 15 14 13 17 17 H 1.08002 * 119.99957 * 275.11927 * 16 15 14 18 18 C 1.37868 * 119.99930 * 95.12096 * 16 15 14 19 19 N 1.31513 * 119.99970 * 186.42491 * 18 16 15 20 20 Si 1.86804 * 120.00311 * 6.42312 * 18 16 15 21 21 H 1.48498 * 109.46906 * 84.90020 * 20 18 16 22 22 H 1.48493 * 109.47342 * 204.90252 * 20 18 16 23 23 H 1.48505 * 109.47021 * 324.90273 * 20 18 16 24 24 C 1.52999 * 109.47209 * 300.00409 * 15 14 13 25 25 C 1.52997 * 109.47339 * 59.99633 * 24 15 14 26 26 C 1.38245 * 119.99944 * 359.81362 * 5 4 3 27 27 C 1.38234 * 119.99829 * 180.27358 * 2 1 3 28 28 H 1.09004 * 109.47466 * 269.72490 * 1 2 3 29 29 H 1.09001 * 109.47208 * 29.72363 * 1 2 3 30 30 H 1.09002 * 109.47629 * 149.72462 * 1 2 3 31 31 H 1.07998 * 119.99934 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.99748 * 180.27445 * 4 3 2 33 33 H 1.08997 * 110.99141 * 273.98243 * 8 6 5 34 34 H 1.08994 * 110.99099 * 37.80666 * 8 6 5 35 35 H 1.08995 * 110.70985 * 205.96601 * 9 8 6 36 36 H 1.09002 * 110.85462 * 82.79896 * 9 8 6 37 37 H 1.09002 * 109.88583 * 262.87600 * 10 9 8 38 38 H 1.08994 * 109.89793 * 141.69042 * 10 9 8 39 39 H 1.09002 * 109.46985 * 299.15660 * 12 11 10 40 40 H 1.08996 * 109.47373 * 299.99849 * 13 12 11 41 41 H 1.09009 * 109.46746 * 59.99767 * 13 12 11 42 42 H 1.09002 * 109.47170 * 299.99982 * 14 13 12 43 43 H 1.09000 * 109.47034 * 180.02562 * 14 13 12 44 44 H 1.08994 * 109.47231 * 179.97438 * 15 14 13 45 45 H 0.97007 * 120.00240 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.46975 * 299.99531 * 24 15 14 47 47 H 1.08995 * 109.46792 * 179.97438 * 24 15 14 48 48 H 1.09001 * 109.47504 * 180.02562 * 25 24 15 49 49 H 1.09002 * 109.47170 * 60.00018 * 25 24 15 50 50 H 1.07991 * 119.99987 * 179.97438 * 26 5 4 51 51 H 1.07999 * 120.00419 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0044 5 6 4.2717 0.0000 -0.0004 6 6 5.7786 0.0000 0.0006 7 1 6.1572 -0.9747 0.3085 8 6 6.3189 0.3723 -1.4026 9 6 7.7280 0.9235 -1.0598 10 6 7.5020 1.6418 0.2872 11 7 6.2927 1.0580 0.8961 12 6 6.5828 0.5217 2.2326 13 6 5.3024 -0.0553 2.8395 14 6 5.6046 -0.6145 4.2312 15 6 6.1336 0.5068 5.1276 16 6 5.0956 1.5939 5.2376 17 1 5.0375 2.3635 4.4820 18 6 4.2202 1.6060 6.3026 19 7 3.2356 2.4772 6.3346 20 14 4.4327 0.3849 7.7003 21 1 5.4121 0.9196 8.6800 22 1 3.1264 0.1703 8.3730 23 1 4.9286 -0.9059 7.1587 24 6 7.4141 1.0838 4.5207 25 6 7.1118 1.6430 3.1290 26 6 3.5805 -1.1972 -0.0057 27 6 2.1981 -1.1971 -0.0057 28 1 -0.3634 -0.0049 1.0277 29 1 -0.3634 0.8925 -0.5095 30 1 -0.3634 -0.8875 -0.5181 31 1 1.6582 2.1324 -0.0004 32 1 4.1205 2.1324 0.0089 33 1 6.3889 -0.5087 -2.0405 34 1 5.7014 1.1409 -1.8674 35 1 8.0618 1.6284 -1.8212 36 1 8.4458 0.1110 -0.9476 37 1 7.3542 2.7085 0.1183 38 1 8.3598 1.4831 0.9406 39 1 7.3337 -0.2645 2.1534 40 1 4.5515 0.7308 2.9187 41 1 4.9258 -0.8546 2.2011 42 1 6.3553 -1.4008 4.1517 43 1 4.6924 -1.0260 4.6634 44 1 6.3485 0.1086 6.1192 45 1 2.6194 2.4855 7.0838 46 1 8.1648 0.2976 4.4411 47 1 7.7906 1.8830 5.1591 48 1 8.0241 2.0537 2.6964 49 1 6.3611 2.4293 3.2085 50 1 4.1204 -2.1324 -0.0098 51 1 1.6582 -2.1325 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173335002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:36 Heat of formation + Delta-G solvation = -6.024646 kcal Electronic energy + Delta-G solvation = -27639.504833 eV Core-core repulsion = 24308.613010 eV Total energy + Delta-G solvation = -3330.891822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26814 -39.70673 -38.32269 -34.60662 -34.04191 -32.90424 -31.70282 -31.55210 -29.94615 -29.41870 -26.81789 -26.42358 -23.64444 -23.52457 -23.17473 -22.12449 -21.29047 -20.64816 -20.49884 -18.30605 -17.41818 -17.34016 -16.40194 -16.13969 -15.85596 -15.71585 -15.49652 -14.96700 -14.62508 -14.51408 -14.47967 -14.29836 -14.22453 -14.12562 -13.99698 -13.46179 -13.15051 -13.03145 -12.91695 -12.81711 -12.66490 -12.60262 -12.27196 -12.24112 -11.96604 -11.86080 -11.82258 -11.71588 -11.60542 -11.56274 -11.45030 -10.94825 -10.72540 -10.59465 -10.45616 -9.68498 -9.21943 -9.10838 -8.18062 -6.17153 0.53475 0.64021 1.34544 1.36016 1.45989 2.40324 2.84972 3.11183 3.17558 3.70261 3.87037 3.98290 4.05191 4.07790 4.13589 4.16634 4.22025 4.29998 4.35909 4.38145 4.57204 4.58204 4.63818 4.67483 4.73717 4.77672 4.81809 4.83459 4.87387 4.91723 4.94087 4.95788 4.99992 5.02802 5.04081 5.15440 5.18116 5.21340 5.28690 5.35992 5.39813 5.43685 5.48241 5.59808 5.63173 5.69386 5.81062 5.81681 5.82988 5.92867 6.21974 6.30029 6.36603 6.48429 6.90343 7.46077 8.98679 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.005609 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.527152 B = 4990.532652 C = 6790.265433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.142 4.142 4 C -0.095 4.095 5 C -0.072 4.072 6 C 0.113 3.887 7 H 0.061 0.939 8 C -0.112 4.112 9 C -0.131 4.131 10 C 0.038 3.962 11 N -0.534 5.534 12 C 0.103 3.897 13 C -0.080 4.080 14 C -0.105 4.105 15 C 0.002 3.998 16 C -0.483 4.483 17 H 0.039 0.961 18 C 0.004 3.996 19 N -0.955 5.955 20 Si 0.934 3.066 21 H -0.269 1.269 22 H -0.296 1.296 23 H -0.248 1.248 24 C -0.097 4.097 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.131 4.131 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.036 0.964 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.028 0.972 44 H 0.026 0.974 45 H 0.259 0.741 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.066 0.934 49 H 0.040 0.960 50 H 0.133 0.867 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -8.547 -17.586 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.160 4.160 4 C -0.114 4.114 5 C -0.072 4.072 6 C 0.005 3.995 7 H 0.079 0.921 8 C -0.150 4.150 9 C -0.169 4.169 10 C -0.090 4.090 11 N -0.258 5.258 12 C -0.005 4.005 13 C -0.118 4.118 14 C -0.144 4.144 15 C -0.016 4.016 16 C -0.521 4.521 17 H 0.057 0.943 18 C -0.191 4.191 19 N -0.597 5.597 20 Si 0.759 3.241 21 H -0.195 1.195 22 H -0.223 1.223 23 H -0.172 1.172 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.149 4.149 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.059 0.941 50 H 0.151 0.849 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.921 -8.092 -17.418 19.826 hybrid contribution -0.051 -0.370 1.265 1.319 sum 4.870 -8.462 -16.153 18.874 Atomic orbital electron populations 1.20795 0.89984 1.03598 1.02323 1.20186 0.97235 0.93169 0.99813 1.21242 0.94639 0.98143 1.01988 1.20948 0.93716 0.98359 0.98360 1.19741 0.95020 0.92974 0.99487 1.21421 0.90758 0.93976 0.93366 0.92068 1.22706 0.96021 1.01672 0.94577 1.22756 0.96767 1.00559 0.96801 1.22874 0.91180 0.99566 0.95341 1.63366 1.29739 1.30956 1.01716 1.21567 0.95638 0.95054 0.88206 1.21239 0.96953 0.98783 0.94833 1.21620 0.98944 0.97571 0.96224 1.19242 0.93933 0.93702 0.94766 1.21255 1.13810 1.09928 1.07145 0.94285 1.25887 0.94795 0.97394 1.01005 1.70086 1.17519 1.39598 1.32484 0.85940 0.77019 0.81149 0.79971 1.19475 1.22252 1.17228 1.21409 0.96871 0.99386 0.95894 1.21433 0.99593 0.97590 0.94628 1.21183 0.94543 0.97715 1.00756 1.21192 0.94265 0.97959 1.01447 0.91801 0.90991 0.89999 0.86273 0.86891 0.89218 0.91187 0.89254 0.90511 0.91235 0.92144 0.93948 0.94556 0.92895 0.92481 0.95265 0.95623 0.93214 0.91822 0.93436 0.91586 0.94076 0.84880 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 10.01 71.24 0.71 -1.71 16 2 C -0.10 -2.90 5.88 -19.87 -0.12 -3.02 16 3 C -0.14 -4.41 9.70 22.27 0.22 -4.19 16 4 C -0.10 -3.07 9.18 22.27 0.20 -2.87 16 5 C -0.07 -2.07 3.36 -19.87 -0.07 -2.14 16 6 C 0.11 2.91 2.02 44.64 0.09 3.00 16 7 H 0.06 1.55 7.49 -2.39 -0.02 1.53 16 8 C -0.11 -2.21 6.47 31.98 0.21 -2.01 16 9 C -0.13 -2.31 6.94 31.78 0.22 -2.09 16 10 C 0.04 0.90 6.14 86.64 0.53 1.43 16 11 N -0.53 -15.85 4.01 -839.95 -3.37 -19.22 16 12 C 0.10 3.47 1.54 44.92 0.07 3.54 16 13 C -0.08 -3.18 4.28 30.59 0.13 -3.05 16 14 C -0.11 -4.38 5.44 30.59 0.17 -4.21 16 15 C 0.00 0.11 2.28 -11.54 -0.03 0.09 16 16 C -0.48 -27.36 7.31 25.60 0.19 -27.17 16 17 H 0.04 2.48 6.26 -2.91 -0.02 2.46 16 18 C 0.00 0.26 5.47 84.65 0.46 0.72 16 19 N -0.96 -61.31 13.96 21.44 0.30 -61.01 16 20 Si 0.93 45.58 27.04 68.60 1.85 47.43 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 23 H -0.25 -11.27 6.76 99.48 0.67 -10.60 16 24 C -0.10 -3.77 5.44 30.59 0.17 -3.60 16 25 C -0.09 -3.49 4.84 30.59 0.15 -3.34 16 26 C -0.12 -3.29 8.95 22.27 0.20 -3.09 16 27 C -0.13 -3.42 9.70 22.27 0.22 -3.21 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 30 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 31 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.11 3.82 7.75 -2.91 -0.02 3.80 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.49 7.91 -2.39 -0.02 1.47 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.40 6.29 -2.39 -0.02 1.39 16 39 H 0.04 1.31 8.09 -2.39 -0.02 1.29 16 40 H 0.04 1.79 7.17 -2.39 -0.02 1.77 16 41 H 0.05 1.93 5.61 -2.38 -0.01 1.92 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.03 1.18 5.22 -2.39 -0.01 1.17 16 45 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 46 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.07 2.07 6.45 -2.39 -0.02 2.05 16 49 H 0.04 1.86 6.30 -2.39 -0.02 1.85 16 50 H 0.13 2.93 8.04 -2.92 -0.02 2.91 16 51 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -67.50 377.38 3.35 -64.15 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.85 Total: 25.58 kcal Atomic # 6 Polarization: -60.65 SS G_CDS: 3.72 Total: -56.93 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -3.07 Total: -80.23 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.85 Total: 47.43 kcal Total: -67.50 3.35 -64.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.123 kcal (2) G-P(sol) polarization free energy of solvation -67.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds