Wall clock time and date at job start Tue Mar 31 2020 10:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99902 * 2 1 4 4 C 1.38221 * 119.99611 * 179.97438 * 3 2 1 5 5 C 1.38247 * 120.00037 * 359.95673 * 4 3 2 6 6 C 1.38216 * 120.00239 * 359.78837 * 5 4 3 7 7 C 1.38211 * 119.99892 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00272 * 0.02562 * 7 2 1 9 9 H 1.09000 * 110.33088 * 37.73835 * 8 7 2 10 10 C 1.54914 * 110.36896 * 275.37017 * 8 7 2 11 11 C 1.55144 * 101.65005 * 204.09714 * 10 8 7 12 12 C 1.54321 * 103.01910 * 35.65565 * 11 10 8 13 13 N 1.47449 * 107.23123 * 337.71206 * 12 11 10 14 14 C 1.46897 * 110.99844 * 236.74395 * 13 12 11 15 15 C 1.53005 * 109.47368 * 296.75376 * 14 13 12 16 16 C 1.52997 * 109.47399 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47138 * 59.99610 * 16 15 14 18 18 C 1.50709 * 109.46801 * 60.00567 * 17 16 15 19 19 H 1.08004 * 119.99458 * 239.99566 * 18 17 16 20 20 C 1.37871 * 119.99905 * 59.99657 * 18 17 16 21 21 N 1.31516 * 120.00463 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99782 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46775 * 60.00154 * 22 20 18 24 24 H 1.48499 * 109.47297 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47223 * 300.00382 * 22 20 18 26 26 C 1.52997 * 109.47728 * 300.00425 * 17 16 15 27 27 C 1.53004 * 109.46811 * 176.75786 * 14 13 12 28 28 H 1.09007 * 109.46992 * 270.02456 * 1 2 3 29 29 H 1.08993 * 109.47365 * 30.01926 * 1 2 3 30 30 H 1.08996 * 109.47226 * 150.02821 * 1 2 3 31 31 H 1.07996 * 120.00270 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99215 * 179.97438 * 4 3 2 33 33 H 1.08011 * 119.99794 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.99906 * 180.25517 * 6 5 4 35 35 H 1.08996 * 110.99027 * 322.19070 * 10 8 7 36 36 H 1.09002 * 110.99302 * 85.97107 * 10 8 7 37 37 H 1.09001 * 110.70602 * 277.27185 * 11 10 8 38 38 H 1.08997 * 110.70341 * 154.03350 * 11 10 8 39 39 H 1.08996 * 109.88735 * 218.31150 * 12 11 10 40 40 H 1.08991 * 109.89120 * 97.12005 * 12 11 10 41 41 H 1.08997 * 109.47139 * 56.75621 * 14 13 12 42 42 H 1.09006 * 109.47113 * 300.00506 * 15 14 13 43 43 H 1.09001 * 109.46911 * 60.00037 * 15 14 13 44 44 H 1.09006 * 109.47119 * 300.00156 * 16 15 14 45 45 H 1.08998 * 109.47465 * 180.02562 * 16 15 14 46 46 H 1.08996 * 109.47120 * 180.02562 * 17 16 15 47 47 H 0.97000 * 120.00082 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.46998 * 299.99985 * 26 17 16 49 49 H 1.09001 * 109.47344 * 180.02562 * 26 17 16 50 50 H 1.09000 * 109.47065 * 299.99595 * 27 14 13 51 51 H 1.08997 * 109.47404 * 59.99997 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2716 0.0000 0.0020 6 6 3.5806 -1.1970 0.0073 7 6 2.1980 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 1 0.5554 -2.4261 -0.6254 10 6 1.0567 -2.9008 1.4464 11 6 0.9023 -4.4390 1.3165 12 6 2.0024 -4.8143 0.3013 13 7 2.3152 -3.5991 -0.4730 14 6 2.1343 -3.8308 -1.9122 15 6 3.1217 -4.8998 -2.3848 16 6 2.9338 -5.1408 -3.8839 17 6 3.1888 -3.8386 -4.6456 18 6 4.5977 -3.3716 -4.3847 19 1 4.7714 -2.4087 -3.9275 20 6 5.6648 -4.1737 -4.7295 21 7 5.4532 -5.3461 -5.2866 22 14 7.4112 -3.5946 -4.4067 23 1 7.5939 -3.3602 -2.9516 24 1 8.3695 -4.6324 -4.8645 25 1 7.6584 -2.3310 -5.1464 26 6 2.2015 -2.7696 -4.1732 27 6 2.3891 -2.5288 -2.6744 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6583 2.1326 -0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3517 0.0000 0.0028 34 1 4.1206 -2.1323 0.0126 35 1 1.8509 -2.6459 2.1480 36 1 0.1151 -2.4367 1.7402 37 1 -0.0836 -4.6961 0.9291 38 1 1.0801 -4.9265 2.2750 39 1 1.6399 -5.5961 -0.3661 40 1 2.8924 -5.1572 0.8287 41 1 1.1153 -4.1687 -2.1006 42 1 4.1408 -4.5619 -2.1963 43 1 2.9403 -5.8274 -1.8418 44 1 1.9148 -5.4785 -4.0727 45 1 3.6369 -5.9026 -4.2205 46 1 3.0545 -4.0101 -5.7136 47 1 6.2040 -5.9106 -5.5288 48 1 1.1825 -3.1073 -4.3619 49 1 2.3828 -1.8420 -4.7162 50 1 1.6856 -1.7672 -2.3378 51 1 3.4081 -2.1909 -2.4860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173335834.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:43 Heat of formation + Delta-G solvation = 10.946746 kcal Electronic energy + Delta-G solvation = -28099.130274 eV Core-core repulsion = 24768.974386 eV Total energy + Delta-G solvation = -3330.155887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21113 -38.34972 -36.71940 -32.97138 -32.64412 -31.53256 -31.03293 -29.44975 -27.78704 -27.52031 -26.52551 -24.61759 -22.84312 -21.96074 -21.48248 -20.72372 -20.00685 -19.38095 -18.58194 -16.54647 -16.13065 -15.63007 -15.20640 -14.83784 -14.60064 -14.39892 -14.03306 -13.73086 -13.23195 -13.14785 -12.94354 -12.87129 -12.81126 -12.71743 -12.25136 -12.21892 -11.95953 -11.60950 -11.41460 -11.21853 -10.99448 -10.94473 -10.83221 -10.82743 -10.69567 -10.56010 -10.51806 -10.41059 -10.19753 -9.97666 -9.54450 -9.11219 -8.77687 -8.56735 -8.43141 -8.27940 -8.16021 -7.88948 -5.88151 -3.91319 1.61787 1.72566 3.37961 3.42203 3.45778 4.01289 4.21566 4.52564 4.70469 4.86037 5.01278 5.03162 5.12377 5.22564 5.32531 5.41710 5.42656 5.49537 5.59713 5.62650 5.69455 5.75122 5.78010 5.81760 5.86224 5.91746 5.99206 6.06268 6.10834 6.17600 6.29572 6.32841 6.35091 6.42998 6.55276 6.58953 6.64315 6.74025 6.76249 6.82722 6.88527 6.91537 6.99099 7.20540 7.31240 7.32398 7.46050 7.49018 7.61321 7.76001 7.83801 8.02459 8.24136 8.58451 9.10482 9.71356 11.17951 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.005382 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.564534 B = 5201.129039 C = 6162.985130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.124 4.124 5 C -0.130 4.130 6 C -0.078 4.078 7 C -0.060 4.060 8 C 0.112 3.888 9 H 0.063 0.937 10 C -0.117 4.117 11 C -0.142 4.142 12 C 0.044 3.956 13 N -0.519 5.519 14 C 0.092 3.908 15 C -0.089 4.089 16 C -0.106 4.106 17 C 0.045 3.955 18 C -0.494 4.494 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.279 1.279 26 C -0.107 4.107 27 C -0.095 4.095 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.009 0.991 45 H 0.092 0.908 46 H 0.022 0.978 47 H 0.258 0.742 48 H 0.028 0.972 49 H 0.045 0.955 50 H 0.035 0.965 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 6.638 13.701 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.148 4.148 6 C -0.096 4.096 7 C -0.060 4.060 8 C 0.004 3.996 9 H 0.081 0.919 10 C -0.155 4.155 11 C -0.180 4.180 12 C -0.084 4.084 13 N -0.243 5.243 14 C -0.015 4.015 15 C -0.127 4.127 16 C -0.145 4.145 17 C 0.027 3.973 18 C -0.533 4.533 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.533 5.533 22 Si 0.711 3.289 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.145 4.145 27 C -0.132 4.132 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.028 0.972 45 H 0.110 0.890 46 H 0.040 0.960 47 H 0.068 0.932 48 H 0.047 0.953 49 H 0.064 0.936 50 H 0.053 0.947 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.014 6.595 13.692 17.669 hybrid contribution 0.247 0.085 -0.093 0.277 sum -8.766 6.679 13.599 17.504 Atomic orbital electron populations 1.20809 0.91975 1.02559 1.01760 1.19631 0.95516 0.92761 1.01162 1.20836 0.94215 0.96921 1.02632 1.21034 0.94239 0.97834 1.01118 1.21187 0.99803 0.92713 1.01120 1.21175 0.93759 0.98450 0.96226 1.19470 0.93926 0.92884 0.99767 1.21360 0.93408 0.89819 0.95025 0.91938 1.22698 1.01358 0.95212 0.96282 1.22806 0.99232 0.96062 0.99934 1.22777 0.97469 0.92957 0.95209 1.63453 1.52101 1.04081 1.04640 1.21854 0.96940 0.97699 0.85057 1.21422 0.99986 0.94449 0.96838 1.21510 0.97617 1.01931 0.93416 1.18674 0.93279 0.90397 0.94999 1.21095 0.90450 1.02702 1.39013 0.92756 1.24905 0.98529 0.95040 0.95393 1.69859 1.30667 1.10123 1.42687 0.86811 0.85184 0.78261 0.78683 1.20266 1.21551 1.20519 1.21556 0.97984 1.00040 0.94901 1.21511 1.02141 0.94523 0.95061 0.91605 0.91943 0.91564 0.86820 0.86831 0.86547 0.84510 0.90673 0.91250 0.91801 0.91039 0.92410 0.90776 0.95886 0.90309 0.95171 0.97188 0.89013 0.96008 0.93240 0.95301 0.93607 0.94663 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.60 36.00 0.35 -0.87 16 2 C -0.09 -1.20 5.88 -104.63 -0.62 -1.81 16 3 C -0.13 -1.64 9.70 -39.58 -0.38 -2.02 16 4 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 5 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 6 C -0.08 -1.23 8.25 -39.58 -0.33 -1.55 16 7 C -0.06 -0.87 3.32 -104.63 -0.35 -1.22 16 8 C 0.11 1.56 1.44 -67.34 -0.10 1.46 16 9 H 0.06 0.90 5.63 -51.93 -0.29 0.61 16 10 C -0.12 -1.35 6.48 -24.59 -0.16 -1.51 16 11 C -0.14 -1.57 6.94 -24.90 -0.17 -1.74 16 12 C 0.04 0.60 6.16 -2.83 -0.02 0.58 16 13 N -0.52 -8.19 3.39 -216.83 -0.73 -8.93 16 14 C 0.09 1.69 1.49 -67.71 -0.10 1.59 16 15 C -0.09 -1.87 4.91 -26.73 -0.13 -2.00 16 16 C -0.11 -2.49 5.23 -26.73 -0.14 -2.63 16 17 C 0.04 1.11 2.59 -91.77 -0.24 0.87 16 18 C -0.49 -13.24 6.61 -34.44 -0.23 -13.47 16 19 H 0.05 1.47 6.71 -52.48 -0.35 1.12 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 21 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 22 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C -0.11 -2.28 5.41 -26.75 -0.14 -2.42 16 27 C -0.09 -1.86 3.88 -26.75 -0.10 -1.96 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.07 0.72 6.10 -51.93 -0.32 0.41 16 31 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 34 H 0.14 2.33 7.19 -52.48 -0.38 1.95 16 35 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.83 6.56 -51.93 -0.34 0.49 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 42 H 0.08 1.87 7.22 -51.93 -0.37 1.50 16 43 H 0.03 0.58 6.70 -51.93 -0.35 0.23 16 44 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.03 0.65 6.05 -51.93 -0.31 0.33 16 51 H 0.08 1.74 5.85 -51.93 -0.30 1.44 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -27.78 372.98 -12.06 -39.84 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.80 Total: 3.23 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -3.75 Total: -31.44 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: -0.11 Total: -33.69 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.78 -12.06 -39.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335834.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.791 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds