Wall clock time and date at job start Tue Mar 31 2020 10:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99902 * 2 1 4 4 C 1.38221 * 119.99611 * 179.97438 * 3 2 1 5 5 C 1.38247 * 120.00037 * 359.95673 * 4 3 2 6 6 C 1.38216 * 120.00239 * 359.78837 * 5 4 3 7 7 C 1.38211 * 119.99892 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00272 * 0.02562 * 7 2 1 9 9 H 1.09000 * 110.33088 * 37.73835 * 8 7 2 10 10 C 1.54914 * 110.36896 * 275.37017 * 8 7 2 11 11 C 1.55144 * 101.65005 * 204.09714 * 10 8 7 12 12 C 1.54321 * 103.01910 * 35.65565 * 11 10 8 13 13 N 1.47449 * 107.23123 * 337.71206 * 12 11 10 14 14 C 1.46897 * 110.99844 * 236.74395 * 13 12 11 15 15 C 1.53005 * 109.47368 * 296.75376 * 14 13 12 16 16 C 1.52997 * 109.47399 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47138 * 59.99610 * 16 15 14 18 18 C 1.50709 * 109.46801 * 60.00567 * 17 16 15 19 19 H 1.08004 * 119.99458 * 239.99566 * 18 17 16 20 20 C 1.37871 * 119.99905 * 59.99657 * 18 17 16 21 21 N 1.31516 * 120.00463 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99782 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46775 * 60.00154 * 22 20 18 24 24 H 1.48499 * 109.47297 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47223 * 300.00382 * 22 20 18 26 26 C 1.52997 * 109.47728 * 300.00425 * 17 16 15 27 27 C 1.53004 * 109.46811 * 176.75786 * 14 13 12 28 28 H 1.09007 * 109.46992 * 270.02456 * 1 2 3 29 29 H 1.08993 * 109.47365 * 30.01926 * 1 2 3 30 30 H 1.08996 * 109.47226 * 150.02821 * 1 2 3 31 31 H 1.07996 * 120.00270 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99215 * 179.97438 * 4 3 2 33 33 H 1.08011 * 119.99794 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.99906 * 180.25517 * 6 5 4 35 35 H 1.08996 * 110.99027 * 322.19070 * 10 8 7 36 36 H 1.09002 * 110.99302 * 85.97107 * 10 8 7 37 37 H 1.09001 * 110.70602 * 277.27185 * 11 10 8 38 38 H 1.08997 * 110.70341 * 154.03350 * 11 10 8 39 39 H 1.08996 * 109.88735 * 218.31150 * 12 11 10 40 40 H 1.08991 * 109.89120 * 97.12005 * 12 11 10 41 41 H 1.08997 * 109.47139 * 56.75621 * 14 13 12 42 42 H 1.09006 * 109.47113 * 300.00506 * 15 14 13 43 43 H 1.09001 * 109.46911 * 60.00037 * 15 14 13 44 44 H 1.09006 * 109.47119 * 300.00156 * 16 15 14 45 45 H 1.08998 * 109.47465 * 180.02562 * 16 15 14 46 46 H 1.08996 * 109.47120 * 180.02562 * 17 16 15 47 47 H 0.97000 * 120.00082 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.46998 * 299.99985 * 26 17 16 49 49 H 1.09001 * 109.47344 * 180.02562 * 26 17 16 50 50 H 1.09000 * 109.47065 * 299.99595 * 27 14 13 51 51 H 1.08997 * 109.47404 * 59.99997 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2716 0.0000 0.0020 6 6 3.5806 -1.1970 0.0073 7 6 2.1980 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 1 0.5554 -2.4261 -0.6254 10 6 1.0567 -2.9008 1.4464 11 6 0.9023 -4.4390 1.3165 12 6 2.0024 -4.8143 0.3013 13 7 2.3152 -3.5991 -0.4730 14 6 2.1343 -3.8308 -1.9122 15 6 3.1217 -4.8998 -2.3848 16 6 2.9338 -5.1408 -3.8839 17 6 3.1888 -3.8386 -4.6456 18 6 4.5977 -3.3716 -4.3847 19 1 4.7714 -2.4087 -3.9275 20 6 5.6648 -4.1737 -4.7295 21 7 5.4532 -5.3461 -5.2866 22 14 7.4112 -3.5946 -4.4067 23 1 7.5939 -3.3602 -2.9516 24 1 8.3695 -4.6324 -4.8645 25 1 7.6584 -2.3310 -5.1464 26 6 2.2015 -2.7696 -4.1732 27 6 2.3891 -2.5288 -2.6744 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6583 2.1326 -0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3517 0.0000 0.0028 34 1 4.1206 -2.1323 0.0126 35 1 1.8509 -2.6459 2.1480 36 1 0.1151 -2.4367 1.7402 37 1 -0.0836 -4.6961 0.9291 38 1 1.0801 -4.9265 2.2750 39 1 1.6399 -5.5961 -0.3661 40 1 2.8924 -5.1572 0.8287 41 1 1.1153 -4.1687 -2.1006 42 1 4.1408 -4.5619 -2.1963 43 1 2.9403 -5.8274 -1.8418 44 1 1.9148 -5.4785 -4.0727 45 1 3.6369 -5.9026 -4.2205 46 1 3.0545 -4.0101 -5.7136 47 1 6.2040 -5.9106 -5.5288 48 1 1.1825 -3.1073 -4.3619 49 1 2.3828 -1.8420 -4.7162 50 1 1.6856 -1.7672 -2.3378 51 1 3.4081 -2.1909 -2.4860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173335834.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:42 Heat of formation + Delta-G solvation = -0.344188 kcal Electronic energy + Delta-G solvation = -28099.619885 eV Core-core repulsion = 24768.974386 eV Total energy + Delta-G solvation = -3330.645499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.38178 -39.60951 -38.21939 -34.62497 -33.84261 -32.62247 -32.59612 -31.14050 -29.11447 -28.80856 -27.47765 -26.61516 -23.96716 -23.45460 -22.79590 -21.95588 -21.25201 -20.59278 -20.40288 -17.87574 -17.43280 -17.35745 -16.60772 -16.29789 -15.91877 -15.55353 -15.37236 -14.88842 -14.79115 -14.64797 -14.33740 -14.25316 -14.00356 -13.87038 -13.58873 -13.21470 -13.11141 -12.95577 -12.86286 -12.78020 -12.62702 -12.51544 -12.45967 -12.16908 -12.05067 -11.94552 -11.84998 -11.72896 -11.56776 -11.49661 -11.34110 -10.95248 -10.68959 -10.44922 -10.28267 -9.50715 -9.30540 -9.10302 -8.01658 -6.10192 0.57675 0.66344 1.40032 1.41093 1.47756 2.46314 2.93192 3.05010 3.26741 3.70972 3.86698 3.98878 4.10557 4.13934 4.15229 4.20274 4.23162 4.32117 4.40616 4.48515 4.55815 4.64732 4.67061 4.76444 4.79014 4.86195 4.88539 4.91147 4.92091 4.97892 5.00221 5.00936 5.04577 5.05517 5.07252 5.18847 5.19353 5.31717 5.39625 5.42459 5.42563 5.58967 5.66914 5.69309 5.72651 5.76350 5.80772 5.87667 5.98985 6.20648 6.25365 6.32108 6.38293 6.48618 6.97718 7.54809 9.03135 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.005382 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.564534 B = 5201.129039 C = 6162.985130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.128 4.128 5 C -0.149 4.149 6 C -0.099 4.099 7 C -0.070 4.070 8 C 0.112 3.888 9 H 0.064 0.936 10 C -0.109 4.109 11 C -0.131 4.131 12 C 0.038 3.962 13 N -0.532 5.532 14 C 0.105 3.895 15 C -0.077 4.077 16 C -0.101 4.101 17 C 0.041 3.959 18 C -0.499 4.499 19 H 0.046 0.954 20 C 0.017 3.983 21 N -0.918 5.918 22 Si 0.936 3.064 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.102 4.102 27 C -0.079 4.079 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.024 0.976 45 H 0.059 0.941 46 H -0.012 1.012 47 H 0.257 0.743 48 H 0.047 0.953 49 H 0.041 0.959 50 H 0.052 0.948 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 8.061 15.593 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.146 4.146 5 C -0.167 4.167 6 C -0.118 4.118 7 C -0.071 4.071 8 C 0.004 3.996 9 H 0.082 0.918 10 C -0.147 4.147 11 C -0.169 4.169 12 C -0.090 4.090 13 N -0.256 5.256 14 C -0.003 4.003 15 C -0.115 4.115 16 C -0.139 4.139 17 C 0.022 3.978 18 C -0.537 4.537 19 H 0.065 0.935 20 C -0.181 4.181 21 N -0.559 5.559 22 Si 0.763 3.237 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.140 4.140 27 C -0.117 4.117 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.006 0.994 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.070 0.930 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.033 8.025 15.592 20.718 hybrid contribution 0.884 -0.335 -0.699 1.176 sum -10.149 7.690 14.893 19.594 Atomic orbital electron populations 1.20857 0.89812 1.03105 1.03128 1.19981 0.97147 0.92277 1.00115 1.21210 0.94156 0.97987 1.01483 1.21315 0.94889 0.98018 1.00391 1.21331 1.00161 0.93212 1.01994 1.21080 0.94647 0.97884 0.98158 1.19593 0.93441 0.93895 1.00175 1.21428 0.92759 0.88804 0.96570 0.91804 1.22672 1.02205 0.95538 0.94325 1.22762 0.98524 0.95762 0.99882 1.22839 0.98514 0.91965 0.95634 1.63341 1.53483 1.05639 1.03099 1.21552 0.96100 0.95790 0.86846 1.21222 0.98912 0.96097 0.95303 1.21355 0.97417 1.00221 0.94940 1.18661 0.93524 0.92288 0.93288 1.21282 0.91741 1.02268 1.38392 0.93531 1.25535 1.01834 0.95207 0.95477 1.69992 1.31370 1.10941 1.43605 0.85954 0.81359 0.77908 0.78523 1.20033 1.21191 1.20069 1.21473 0.97865 0.98595 0.96094 1.21315 1.00876 0.95642 0.93872 0.89721 0.90654 0.91767 0.84177 0.84724 0.86475 0.86951 0.91292 0.88876 0.90648 0.89197 0.92997 0.91217 0.95116 0.93718 0.93784 0.95705 0.92289 0.99390 0.93421 0.93414 0.94020 0.92973 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 9.60 71.24 0.68 -1.29 16 2 C -0.09 -2.27 5.88 -19.87 -0.12 -2.38 16 3 C -0.13 -2.99 9.70 22.27 0.22 -2.78 16 4 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 5 C -0.15 -4.36 10.05 22.27 0.22 -4.13 16 6 C -0.10 -3.16 8.25 22.27 0.18 -2.98 16 7 C -0.07 -1.96 3.32 -19.87 -0.07 -2.02 16 8 C 0.11 2.90 1.44 44.64 0.06 2.96 16 9 H 0.06 1.66 5.63 -2.39 -0.01 1.64 16 10 C -0.11 -2.19 6.48 31.98 0.21 -1.98 16 11 C -0.13 -2.49 6.94 31.78 0.22 -2.27 16 12 C 0.04 0.99 6.16 86.65 0.53 1.53 16 13 N -0.53 -16.40 3.39 -839.93 -2.84 -19.25 16 14 C 0.11 3.80 1.49 44.92 0.07 3.86 16 15 C -0.08 -3.30 4.91 30.59 0.15 -3.15 16 16 C -0.10 -4.84 5.23 30.59 0.16 -4.68 16 17 C 0.04 2.08 2.59 -11.54 -0.03 2.05 16 18 C -0.50 -27.58 6.61 25.60 0.17 -27.41 16 19 H 0.05 2.60 6.71 -2.91 -0.02 2.58 16 20 C 0.02 0.97 5.30 84.65 0.45 1.42 16 21 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 22 Si 0.94 45.08 29.54 68.60 2.03 47.11 16 23 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 C -0.10 -4.35 5.41 30.58 0.17 -4.19 16 27 C -0.08 -3.09 3.88 30.58 0.12 -2.97 16 28 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.07 1.13 8.09 -2.39 -0.02 1.12 16 30 H 0.06 1.17 6.10 -2.39 -0.01 1.15 16 31 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.11 4.04 7.19 -2.91 -0.02 4.02 16 35 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.41 6.56 -2.39 -0.02 1.40 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.03 1.08 8.13 -2.39 -0.02 1.06 16 42 H 0.04 2.20 7.22 -2.38 -0.02 2.18 16 43 H 0.04 1.72 6.70 -2.39 -0.02 1.70 16 44 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 46 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 47 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.05 1.85 6.05 -2.39 -0.01 1.83 16 51 H 0.05 2.31 5.85 -2.39 -0.01 2.30 16 Total: -1.00 -61.88 372.98 3.94 -57.95 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.89 Total: 21.21 kcal Atomic # 6 Polarization: -56.99 SS G_CDS: 3.62 Total: -53.37 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -2.60 Total: -72.89 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -61.88 3.94 -57.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335834.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.603 kcal (2) G-P(sol) polarization free energy of solvation -61.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds