Wall clock time and date at job start Tue Mar 31 2020 11:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 H 1.08997 * 109.47261 * 179.59885 * 3 2 1 5 5 C 1.50699 * 109.47315 * 299.60460 * 3 2 1 6 6 H 1.07999 * 120.00636 * 119.99548 * 5 3 2 7 7 C 1.37877 * 119.99761 * 300.00171 * 5 3 2 8 8 N 1.31516 * 119.99954 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99982 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47141 * 60.00133 * 9 7 5 11 11 H 1.48508 * 109.47118 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47301 * 299.99873 * 9 7 5 13 13 N 1.46906 * 109.47240 * 59.60082 * 3 2 1 14 14 C 1.46903 * 110.99762 * 85.76081 * 13 3 2 15 15 C 1.52998 * 109.45651 * 206.94363 * 14 13 3 16 16 C 1.53079 * 109.42076 * 179.61049 * 15 14 13 17 17 C 1.52597 * 109.48709 * 59.32458 * 16 15 14 18 18 C 1.53966 * 109.97020 * 179.35360 * 17 16 15 19 19 C 1.54429 * 102.27910 * 267.14373 * 18 17 16 20 20 C 1.51404 * 105.20688 * 333.99821 * 19 18 17 21 21 C 1.38472 * 130.39390 * 197.27986 * 20 19 18 22 22 C 1.38100 * 120.24317 * 180.18903 * 21 20 19 23 23 C 1.38249 * 119.92739 * 359.43748 * 22 21 20 24 24 C 1.38095 * 119.93758 * 0.29594 * 23 22 21 25 25 C 1.38316 * 109.76391 * 16.96490 * 20 19 18 26 26 C 1.52555 * 110.53986 * 301.02965 * 17 16 15 27 27 C 1.52997 * 109.45924 * 86.85678 * 14 13 3 28 28 H 1.08995 * 109.47067 * 56.31576 * 1 2 3 29 29 H 1.08997 * 109.47128 * 176.31705 * 1 2 3 30 30 H 1.08999 * 109.47135 * 296.31611 * 1 2 3 31 31 H 1.08992 * 109.47082 * 239.99958 * 2 1 3 32 32 H 1.09005 * 109.46697 * 119.99524 * 2 1 3 33 33 H 0.97009 * 119.99985 * 179.97438 * 8 7 5 34 34 H 1.00895 * 110.99910 * 209.71220 * 13 3 2 35 35 H 1.09004 * 109.45478 * 326.90764 * 14 13 3 36 36 H 1.09000 * 109.47770 * 59.63003 * 15 14 13 37 37 H 1.08998 * 109.48834 * 299.59937 * 15 14 13 38 38 H 1.08994 * 109.47290 * 299.31893 * 16 15 14 39 39 H 1.09001 * 109.46810 * 179.32678 * 16 15 14 40 40 H 1.09002 * 110.84007 * 148.94278 * 18 17 16 41 41 H 1.09007 * 111.01305 * 25.41966 * 18 17 16 42 42 H 1.09001 * 110.29233 * 215.06416 * 19 18 17 43 43 H 1.09003 * 110.29808 * 92.92911 * 19 18 17 44 44 H 1.08004 * 119.87840 * 359.91603 * 21 20 19 45 45 H 1.07998 * 120.03532 * 179.70538 * 22 21 20 46 46 H 1.07995 * 120.03325 * 180.31275 * 23 22 21 47 47 H 1.07993 * 119.88013 * 180.02562 * 24 23 22 48 48 H 1.09000 * 109.46016 * 178.95045 * 26 17 16 49 49 H 1.09000 * 109.46521 * 298.92838 * 26 17 16 50 50 H 1.09000 * 109.47754 * 300.34921 * 27 14 13 51 51 H 1.09009 * 109.47367 * 60.35922 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0072 5 6 1.5457 2.1501 -1.2353 6 1 0.9242 3.0284 -1.1424 7 6 1.8870 1.6761 -2.4843 8 7 2.6442 0.6068 -2.5975 9 14 1.2737 2.5528 -4.0156 10 1 1.7682 3.9530 -4.0158 11 1 1.7772 1.8503 -5.2232 12 1 -0.2112 2.5522 -4.0251 13 7 1.5425 2.1378 1.1946 14 6 2.4284 1.9093 2.3439 15 6 1.6238 2.0299 3.6396 16 6 2.5457 1.7821 4.8363 17 6 3.6781 2.8049 4.8269 18 6 4.6036 2.5758 6.0358 19 6 4.0016 3.5248 7.0949 20 6 3.3107 4.6154 6.3040 21 6 2.8838 5.8736 6.6941 22 6 2.2640 6.7101 5.7868 23 6 2.0788 6.2953 4.4810 24 6 2.5085 5.0431 4.0882 25 6 3.1250 4.1998 4.9979 26 6 4.4773 2.7067 3.5312 27 6 3.5493 2.9507 2.3384 28 1 -0.3633 0.5699 -0.8551 29 1 -0.3633 -1.0255 -0.0660 30 1 -0.3633 0.4556 0.9211 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.8840 0.2731 -3.4763 34 1 1.4276 3.1244 1.0172 35 1 2.8605 0.9108 2.2764 36 1 0.8219 1.2916 3.6395 37 1 1.1968 3.0303 3.7107 38 1 2.9631 0.7774 4.7714 39 1 1.9757 1.8796 5.7603 40 1 5.6289 2.8598 5.7985 41 1 4.5579 1.5400 6.3723 42 1 4.7914 3.9495 7.7145 43 1 3.2799 2.9916 7.7138 44 1 3.0323 6.2003 7.7127 45 1 1.9281 7.6889 6.0958 46 1 1.5988 6.9500 3.7688 47 1 2.3637 4.7202 3.0679 48 1 5.2687 3.4562 3.5350 49 1 4.9184 1.7132 3.4509 50 1 4.1182 2.8674 1.4123 51 1 3.1181 3.9492 2.4115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173688334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:26 Heat of formation + Delta-G solvation = 12.279940 kcal Electronic energy + Delta-G solvation = -27351.673201 eV Core-core repulsion = 24021.575125 eV Total energy + Delta-G solvation = -3330.098076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07488 -37.87577 -36.21823 -34.54089 -32.20625 -30.97809 -30.58221 -30.02818 -29.06233 -27.70394 -25.71361 -23.50585 -22.89800 -22.71682 -22.42936 -21.28274 -20.04416 -19.07445 -18.82698 -16.52138 -15.90435 -15.52765 -15.28517 -14.94443 -14.82116 -14.57730 -14.01166 -13.73014 -13.66765 -13.16978 -13.04543 -12.71824 -12.65380 -12.49256 -12.32056 -12.11397 -11.87540 -11.68375 -11.66481 -11.59284 -11.17955 -11.09731 -10.92096 -10.81875 -10.72015 -10.55906 -10.35160 -10.27093 -9.97664 -9.85357 -9.63409 -9.39382 -9.31070 -8.74281 -8.73858 -8.46738 -8.42833 -7.11605 -5.99067 -4.04249 1.39919 1.44501 3.31743 3.36656 3.39263 3.79790 4.36918 4.41832 4.46068 4.81214 4.89886 4.98127 5.04002 5.14532 5.22499 5.24255 5.32275 5.41309 5.48447 5.52158 5.60091 5.64012 5.68739 5.77755 5.81296 5.89145 5.96658 6.00666 6.03019 6.09480 6.22260 6.27164 6.30855 6.37834 6.44638 6.50666 6.54418 6.59347 6.63369 6.72746 6.74209 6.80464 6.88098 6.94591 7.06278 7.28406 7.40674 7.54948 7.78680 7.83178 7.90556 8.32168 8.46927 8.74484 9.06439 9.60502 11.06662 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.003602 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.841588 B = 7771.303593 C = 8416.596844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.681 5.681 14 C 0.093 3.907 15 C -0.108 4.108 16 C -0.099 4.099 17 C -0.017 4.017 18 C -0.114 4.114 19 C -0.080 4.080 20 C -0.103 4.103 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.067 4.067 26 C -0.099 4.099 27 C -0.167 4.167 28 H 0.055 0.945 29 H 0.011 0.989 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.008 0.992 33 H 0.260 0.740 34 H 0.328 0.672 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.143 0.857 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 6.520 18.582 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.310 5.310 14 C -0.018 4.018 15 C -0.146 4.146 16 C -0.137 4.137 17 C -0.017 4.017 18 C -0.152 4.152 19 C -0.117 4.117 20 C -0.103 4.103 21 C -0.131 4.131 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.067 4.067 26 C -0.137 4.137 27 C -0.206 4.206 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.160 0.840 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.415 5.871 18.585 19.639 hybrid contribution 0.466 1.079 -1.159 1.650 sum 2.881 6.949 17.426 18.981 Atomic orbital electron populations 1.21439 0.97617 0.97236 1.01323 1.21436 0.94934 0.98447 0.99258 1.19095 0.92862 0.91288 0.85742 0.98208 1.21167 1.31493 1.11890 0.90462 0.92492 1.24872 0.95080 0.94998 0.98839 1.69879 1.36617 1.22703 1.23598 0.86676 0.79238 0.79641 0.82524 1.20446 1.21401 1.20251 1.60766 1.48723 1.15469 1.06021 1.21477 0.90916 0.97748 0.91676 1.21573 0.97760 1.02033 0.93227 1.21474 0.95918 0.97591 0.98726 1.19847 0.95050 0.91414 0.95396 1.22396 0.98826 0.99580 0.94380 1.21037 0.98905 0.94295 0.97415 1.20627 0.99627 0.94674 0.95416 1.20536 0.99914 0.93339 0.99360 1.20986 1.00116 0.99503 0.93799 1.21112 1.00355 0.96379 0.96173 1.21424 0.97819 0.93417 1.00451 1.20386 0.97561 0.95192 0.93545 1.21449 0.97397 1.01478 0.93389 1.22783 0.98600 1.01322 0.97870 0.92630 0.96955 0.93918 0.89679 0.97322 0.92986 0.85519 0.91527 0.91729 0.92053 0.91701 0.92361 0.91007 0.90500 0.91162 0.90494 0.86820 0.86365 0.86051 0.83992 0.92502 0.91830 0.91726 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.33 16 2 C -0.10 -2.47 5.57 -26.73 -0.15 -2.62 16 3 C 0.22 5.28 2.10 -68.86 -0.14 5.14 16 4 H 0.00 0.01 7.25 -51.93 -0.38 -0.37 16 5 C -0.51 -13.52 7.28 -34.44 -0.25 -13.77 16 6 H 0.06 1.50 7.61 -52.49 -0.40 1.10 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -13.76 5.35 -100.95 -0.54 -14.30 16 14 C 0.09 1.59 2.26 -67.71 -0.15 1.43 16 15 C -0.11 -1.60 5.24 -26.69 -0.14 -1.74 16 16 C -0.10 -1.24 4.61 -26.90 -0.12 -1.37 16 17 C -0.02 -0.21 0.55 -155.43 -0.09 -0.29 16 18 C -0.11 -1.14 6.08 -25.48 -0.15 -1.30 16 19 C -0.08 -0.76 6.76 -26.79 -0.18 -0.94 16 20 C -0.10 -1.21 6.14 -104.16 -0.64 -1.85 16 21 C -0.11 -1.24 10.04 -39.55 -0.40 -1.64 16 22 C -0.13 -1.37 10.05 -39.63 -0.40 -1.77 16 23 C -0.12 -1.45 10.05 -39.63 -0.40 -1.85 16 24 C -0.11 -1.50 7.59 -39.53 -0.30 -1.80 16 25 C -0.07 -0.85 4.46 -104.33 -0.47 -1.32 16 26 C -0.10 -1.32 4.62 -26.92 -0.12 -1.44 16 27 C -0.17 -2.62 4.85 -26.69 -0.13 -2.75 16 28 H 0.05 1.35 7.10 -51.93 -0.37 0.98 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.92 7.71 -51.93 -0.40 0.52 16 31 H 0.08 2.30 6.06 -51.93 -0.31 1.98 16 32 H 0.01 0.19 7.51 -51.93 -0.39 -0.20 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.33 6.57 7.92 -39.29 -0.31 6.26 16 35 H 0.07 1.26 7.17 -51.93 -0.37 0.89 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.92 5.91 -51.93 -0.31 0.62 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 41 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.14 1.96 4.28 -52.49 -0.22 1.73 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.06 1.16 7.57 -51.93 -0.39 0.77 16 51 H 0.08 1.18 3.65 -51.92 -0.19 0.99 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -27.60 373.74 -11.93 -39.53 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.65 Total: 8.05 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -3.98 Total: -30.58 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.09 Total: -38.70 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.60 -11.93 -39.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173688334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.806 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds